BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44910.1
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897270 jgi|Araly1|897270|Al_scaffold_0005_1236 2942 0.0
> Ahg897270 jgi|Araly1|897270|Al_scaffold_0005_1236
Length=2106
Score = 2942 bits (1593), Expect = 0.0
Identities = 1944/2115 (92%), Gaps = 18/2115 (1%)
Strand=Plus/Plus
Query 208 ATGTTGGCTGGTCTGATTCTGGGGCCTCAATTGTTCAATCTTAGGGAGGTATCATCAAGG 267
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGTTGGCTGGTCTGATTCTGGGGCCTCAATTGTTCAATCTTAGGGAGGTATTATCGCGG 60
Query 268 AAATTATCGTGGGATCCTGCACTAGATGGAAACGGGCCGCTACGAGGCCTTTCGGTGTGT 327
||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 61 AAATTATCGTGGGATCCTGCACTGGATGGAAACGGGCCACTAAGAGGCCTCTCGGTGTGT 120
Query 328 GGAAACATTATGCTTGCATTTTTTATGACAGTCAAAATCAGCCGTCGATTGGCATTCAAC 387
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 GGAAACATTATGCTTGCATTTTTGATGACAGTCAAAATCAGCCGTCGATTAGCATTCAAC 180
Query 388 AACGGATGGCTACCCATCGTGATAGGGACTTTGAGCTTCATTGTTCCTTTTTTGGGTGGC 447
|||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 181 AACGGATGGCTACCAATCGTGATCGGGGTTTTGAGCTTCATCGTTCCTTTTTTGGGTGGC 240
Query 448 TTCTGTGTGAGAAACCTCCACACTGATAATATAGACCCTTACTACATGTCGCCGAATAAA 507
||||||||| ||||||||||||| || |||||||||||| | ||| ||||||||| ||||
Sbjct 241 TTCTGTGTGCGAAACCTCCACACAGACAATATAGACCCTCAATACTTGTCGCCGAGTAAA 300
Query 508 GTCCTTGCCGAGCGCATTGTGGTCATCTCGAGCCAATCCTCGATTCTCTTGCCTACCGTC 567
|||||||||||||| | |||||||||||| |||||||||||||||||||| || || |||
Sbjct 301 GTCCTTGCCGAGCGAACTGTGGTCATCTCAAGCCAATCCTCGATTCTCTTACCGACTGTC 360
Query 568 GTTCATTTCCTGTCAGAACTCAAGATCCTCAATTCAGAGCTTGGTCGCCTTGTGTTGTCT 627
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTTCATTTCCTGTCGGAACTCAAGATCCTCAATTCCGAGCTTGGTCGCCTTGTGTTGTCT 420
Query 628 GCATCCCTTATCAATGACATCTTCGCGTCTACTGTCAGCATTTTCGCCTATCTTGTGGGA 687
|||||||||||||||||||||||||| |||| ||||||||| | |||||||||| ||||
Sbjct 421 GCATCCCTTATCAATGACATCTTCGCTTCTATTGTCAGCATAGTAGCCTATCTTGCGGGA 480
Query 688 ACGTACAAGAACATCTCTCCCATGACAGCATATCGTGACCTTATAGCGGTGATCATTTTG 747
||||||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||||
Sbjct 481 ACGTACAAGAATATCTCTCCAATGACAGCCTACCGTGATCTTATAGCGGTGATTATTTTG 540
Query 748 ATTCTAGTAGCCTTTTGCGTTTTAAGGCCGGTCGTAGAATGGATAGTAGAACGCACACCA 807
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCTCGTAGTCTTTTGCGTTTTAAGGCCGGTCGTAGAATGGATAGTAGAACGCACACCA 600
Query 808 GAAGGCAAACCTGTGGCAGATGTGTATGTACATGCTGTGGTTTTGAGCGTAATTGCTTCC 867
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GAAGGAAAACCTGTGGCAGATGTGTATGTACATGCTGCGGTTTTGAGCGTAATTGCTTCC 660
Query 868 GCCGCATACTCTTCATTTTTTAATATGAAATACCTTTTGGGACCATTCTTACTCGGCATC 927
|| |||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 661 GCTGCATACACAACATTTTTCAATATGAAATACCTTTTGGGACCATTCTTACTCGGCCTC 720
Query 928 ATCATACCAGAAGGTCCACCTATAGGATCTGCCTTGGAAGCCAAGTATGAGGCTCTCACA 987
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 ATCATACCCGAAGGTCCACCTATAGGATCCGCCTTGGAAGCCAAGTATGAGGCTCTCACA 780
Query 988 ATGAACGTGCTAATACCAATCTCAATCACATTCAGCACGATGAGATGCGATGTGATGAAG 1047
||||||||||| | ||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 781 ATGAACGTGCTTACACCGATCTCAATTACATTCAGCACGATGAGATGCGACGTGATGAAG 840
Query 1048 ATCGTCTACCAATATGATGACATTTGGTACAACATCTTCTTAATGACATTTACGGGCTTT 1107
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 841 ATCGTCTACCAATATGATGACATTGGGTACAACATCTTCTTAATGTTATTTACGGGCGTT 900
Query 1108 TTGAAAATGGCGACCGGGATGGTACCTTGCTTGTACTGCAAGATACCATTCAAGGAGGCA 1167
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 901 TTGAAAATGGTGACCGGGCTGGTACCTTGCTTGTACTGCAAGATACCACTCAAGGAGGCA 960
Query 1168 ATAGCCGCTTCCCTTCTTCT-ATGCTCTAAGAGTTTCTCTGAAATCTTTCTCTACGAATC 1226
|||||||||||||| || || |||||||||||||||||| || || ||||||||||||||
Sbjct 961 ATAGCCGCTTCCCTACT-CTTATGCTCTAAGAGTTTCTCCGAGATATTTCTCTACGAATC 1019
Query 1227 AACATACGACGATTCGTATATATCGCAAGCAACATATACATTCTTGATCACTTGTGC-TC 1285
||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 1020 AACATTCGACGATTCGTATATATCGCAGGCAACATATACGTTCTTGATCGCTTGTGCGT- 1078
Query 1286 TAATAAACTCTGGAATTATCCCCACAGCCTTGGCCGGACTATATGACCCGAAGCGGAAGT 1345
|||||||||||||||||||||| || |||||||||||||| || || |||||||||||||
Sbjct 1079 TAATAAACTCTGGAATTATCCCAACGGCCTTGGCCGGACTGTACGATCCGAAGCGGAAGT 1138
Query 1346 ACGTTGGTTACCaaaaaaaGAACATCATGAATCTAAAACCAGATTCAGATCTCCGGATCT 1405
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1139 ACGTTGGTTACCAAAAAAAGAACATCATGAATCTAAAACCAAATTCTGATCTCCGGATCT 1198
Query 1406 TGACTTGTATACATAGACCTGAGAACATCTCTGCGGCCATTTCATTTCTCCAATTTTTGC 1465
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1199 TGACTTGTGTACACAAACCTGAGAACATCTCTGCGGCCATTTCATTTCTCCAATTATTAC 1258
Query 1466 CCTCCACCATTGTGGTCACAGTCCTCCATCTCGTTAAGCTTGTTGGCAAAACCGTTCCCG 1525
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 1259 CCTCCACCATCGTGGTCACAGTCCTCCATCTCGTGAAGCTTGTTGGCAAAATCGTCCCCG 1318
Query 1526 TCCTAATCTCACACAACAAGCAAAT-AAATCGTGTAGTAACTAACTCCTACATCCATACC 1584
| ||||||||||| ||| | |||| ||| ||||| || ||||||||||||||||||||
Sbjct 1319 TGGTAATCTCACACCACA-GTAAATCAAAACGTGTTGTGACTAACTCCTACATCCATACA 1377
Query 1585 GC-CAACCTTGCCTTCAGCCAGTTGGAGTCAGTGACCATGACCATGTTCACTGC-CATCA 1642
|| || |||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1378 GCACA-CCTTGCATTCAGCCAGTTGGAGTCAGTGACCATGACCATGTTCACTGCTC-TCA 1435
Query 1643 CGCACGAGAACTTAATGCACGATGAAATTTGCAAGGTCGCTTTGGAACAAGCCACATCGA 1702
||||||||||| |||||||||||||||| |||||| |||| |||||||||| | ||||||
Sbjct 1436 CGCACGAGAACCTAATGCACGATGAAATCTGCAAGCTCGCGTTGGAACAAGTCGCATCGA 1495
Query 1703 TTATTATCGTCCCCTCGGGGAGGAAATGGACCGTAGATGGGGCGTTTGAGTCAGAGGACG 1762
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1496 TTATTATCGTCCCCTCGGGGAGGAAATGGACCATAGATGGGACGTTTGAGTCAGAGGACG 1555
Query 1763 AAGCTATAAGACGTCTCAATGAGTCACTCCTCAAGAGTGCATCTTGTTCTATTGGGATTC 1822
| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 1556 AGGCTATTAGACGTCTCAATGAGTCACTACTCCAGAGTGCATCTTGTTCTATAGGGATTC 1615
Query 1823 TTGTGGACCGTGGACAGTTGTCGCTGAAAGGAACAAGAAAATTTAATATCGACGTTGGTG 1882
| ||||||||||||||||| ||||||| ||||||||||| || | ||| | |||||||
Sbjct 1616 TCGTGGACCGTGGACAGTTCTCGCTGAGAGGAACAAGAAGATACGAGATCAATGTTGGTG 1675
Query 1883 TGATCTTCATTGGAGGCAAAGACGATCGGGAGGCACTCTCGTTGGTGAAA-AAGATGAAG 1941
|||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||
Sbjct 1676 TGATCTTCATTGGAGGCAAAGACGATCGTGAAGCACTCTCGTTGGT-AAAGAAGATGAAG 1734
Query 1942 CAAAACCCTAGAGTCAAA-ATCACTGTGATCCGACTCATCTCTGACC-GAGAAACAGAGT 1999
|| ||||||||||| ||| ||||||||||| |||||||||||| | | |||||| ||| |
Sbjct 1735 CATAACCCTAGAGT-AAATATCACTGTGATTCGACTCATCTCT-AGCAGAGAAATAGAAT 1792
Query 2000 CGACTAATTGGGATTACATTCTTGATCACGAGGTTTTAGAGGATCTTAAAGATACAGAGG 2059
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1793 CGACTAATTGGGATTACATTCTTGATCACGAGGTATTAGAGGATCTTAAAGATACCGATG 1852
Query 2060 CCACAAACTCTATTGCATATACAGAGAGGATTGTGACTGGAGGTCCAGAAGTGGCCACTA 2119
||||||| | ||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 1853 CCACAAATTGTATTGCATATACAGAGAGGATTGTGGCTGGAGGTCCTGAAGTAGCCACTA 1912
Query 2120 CCGTCCGATCACTCTCTGAGGATTATGATCTTATGGTAGTTGGGAGAGATCATGGCATGG 2179
|||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1913 CCGTTCGATCTCTTTCTGAGGATTATGATCTTATGGTGGTTGGGAGAGATCATGGAATGG 1972
Query 2180 CATCACCGGACTTCGATGGACTCATGGAGTGGGTCGAACTACCCGAGTTAGGTGTCATTG 2239
||||||| ||||| |||||||||| ||||||| | |||||||||||| ||||||| || |
Sbjct 1973 CATCACCAGACTTTGATGGACTCAAGGAGTGGATAGAACTACCCGAGCTAGGTGTTATCG 2032
Query 2240 GAGATTTGCTAGC-GTCTAGAGAACTCGACTCTAGGGTTTCTGTTTTGGTAGTCCAACAA 2298
||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2033 GAGATTTGCTAGCTG-CTAGAGATCTCGACTCTAGGGTTAATGTTTTGGTAGTCCAACAA 2091
Query 2299 CAACAACAAACGTGA 2313
|| ||||||||||||
Sbjct 2092 CAGCAACAAACGTGA 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5