BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44920.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973 3330 0.0
Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718 1474 0.0
> Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973
Length=2352
Score = 3330 bits (1803), Expect = 0.0
Identities = 2179/2362 (92%), Gaps = 20/2362 (1%)
Strand=Plus/Plus
Query 1 ATGAACACGACTACTTACATTGGGCATTGCCGGATATCATTCTTCAACATATCTTCTCAG 60
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||
Sbjct 1 ATGAACACGACTACTTACATTGGGGATTGCCGAATATCATTATTCAACATATCTTCTAAG 60
Query 61 GGATTTTGGGAGAACCTAAAATCGCCT-GATGTGGTTTTCGGGTACTCGTTGCCTCTCCT 119
|||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 61 GGATTTTGGGAGAACCTAAAATCG-CTCGATGTAGTTTTTGGGTACTCGTTGCCTCTCCT 119
Query 120 GGAGATTCAAATAATA-TTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGAT 178
|||||||||||||||| || |||||||| || |||||||||||||| |||||||||||||
Sbjct 120 GGAGATTCAAATAATACTT-ATATTCTTTTGTATTGTCATGTCTCACATGTTCCTCAGAT 178
Query 179 GCATCGGCGTTTCCCAGATCGTTTCATATATGATTGCTGGACTAATTCTAGGGCCTCAGC 238
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 179 GCATCGGCATTTCCCAGATCGTTTCATATATGATTGCTGGAATAATTCTAGGGCCTCAAC 238
Query 239 TTTTCGATATACTAGAGAAGTCTTCAGGA-AAACTATCGGCGGATCCTGCGTTGGATGGA 297
|||||||| |||| ||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 239 TTTTCGATTTACTGGAGAATTCTTCA-GAGAAACTATCGGCGGATCCTGCGTTGGATGGA 297
Query 298 ACCGCAGCGTTAAGATGCATTTCAGTATTTGGAAGACTAATGTTTACGTTTCTAATGACT 357
|| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 298 ACTGCGGCGTTAAGATGCATTTCGGTGTTTGGAAGACTAATGTTTACGTTTCTAATGACT 357
Query 358 GTTAGGACCAGCAGGCGGGTGGCGTTCCATAGCGGAAAATTGCCAGTTGTGATCGGGATC 417
||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 358 GTTAGAACCAGCAGGCGAGTGGCGTTTCATAGCGGAAATTTGCCCGTTGTGATTGGGATC 417
Query 418 GTGTCCTTCTTTGCTCCTTTGTTTAGTCTCAGTTTCCTGAACCTTTTCACTGACAACATC 477
|| ||||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 418 GTTTCCTTCTTTGCTCCTCTGTTTGGTCTCGGTTTCGTGAACCTTTTCTCTGACAACATC 477
Query 478 GACCCTCACTACATGTCTTTAGACAAAGCCCTG-GCCGAGCGCACTGTGATTGTCATAAC 536
||||||||||||||| || |||| ||||||||| | |||||||| || ||||||||||||
Sbjct 478 GACCCTCACTACATGCCTCTAGATAAAGCCCTGAG-CGAGCGCATTGCGATTGTCATAAC 536
Query 537 TCAGTC-TCAGATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCA 595
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCAATCTTC-GATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCA 595
Query 596 ACTCCGAGCTTGGTCGCCTTGCATTATCTGCAAGTGCCATCAACGACATGTTGGGGATTT 655
||||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||
Sbjct 596 ACTCCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTTATCAACGACATCTTGGGGATTT 655
Query 656 TTGCCATGATAGTCGCCACTACACAAGCAACCTACATTCATGTTTCACATGCAATAGCTT 715
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 656 TTGCCATGATGGTCGCCACTATACAAGCAACCTACATTCATGTTTCACATGCAACAGCCT 715
Query 716 ACCGTGACCTTGTCGCGGTGATCATCTTCTTTCTCATCGTCtttt-ttgtttttAAGCCG 774
| |||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct 716 ATCGTGACATTGTCGCAATGATCATCTTCTTTCTCATCGT-TTTTCTTGTTTTTAAGCCG 774
Query 775 ATGGTGCAATGGATCATAGACCGCACACCCGAAGACAAGCCCGTGGAGGATATATACATT 834
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 775 ATGGTGCAATGGATCATAGACCGCACACCCGAAGACAAGCCAGTGGAGGATATATATATT 834
Query 835 CATGCCGTGATTCTGACAGCATTTGCTTCCGCGGCTTATTTTGTGTTTTTCAACATGAAA 894
|||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 CATGTCGTGATTCTGACTGTATTTGCTTCAGCGGCTTATTTTGTGTTTTTCAACATGAAA 894
Query 895 TACGTCTTAGGACCATTAATTATCGGCATCATCATACCAGAGGGTCCACCGTTAGGATCC 954
||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 895 TACATCTTAGGACCATTAATAATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCG 954
Query 955 GCTCTGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATCACA 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 GCTCTGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATAACA 1014
Query 1015 TTCAGCGCGATGAGATGTGATGGACTAAGGATCCTTAGCCAGTTCACTGACATCTACTTC 1074
|||||||| ||||||||||||| | |||||||| ||||||||||||||||||||| ||||
Sbjct 1015 TTCAGCGCAATGAGATGTGATGTAGTAAGGATCTTTAGCCAGTTCACTGACATCTTCTTC 1074
Query 1075 AACATCTTCCTAACATTGCTTATACTTGTCATAAAACTGGTTGCTTGCCTTACACTTTGC 1134
||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1075 AACATCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTCGCATGCCTTACACCTTGC 1134
Query 1135 TTGTACTACAAGTTACCTCGCAGTGAATCCTTGGCTGTTTCCCTCATCTTAAGCTACAAA 1194
||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 1135 TTGTACTACAAGTTACCTCTTAGTGAATCCATGGCTGTTTCCCTCATCTTGAGCTACAAA 1194
Query 1195 AGTTTTGTTGAATTCGTTCTCTATGAAGCTGTATTAGAAGAAAAGTTCATATCACAGGCC 1254
||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | ||||
Sbjct 1195 AGTTTTGTTGAATTCGTTCTCTATGAATCTGTATTAGAGGAAAAGTTGATATCGCTGGCC 1254
Query 1255 ACTTACGCGTTCTTAATCCTATATTCGCTACTAAGTGCAGGGATTGTCCCTATGGTCGTA 1314
|||||||||||||||||| ||||||| ||| ||| |||||||||||| ||||||||| ||
Sbjct 1255 ACTTACGCGTTCTTAATCATATATTCACTATTAAATGCAGGGATTGTTCCTATGGTCTTA 1314
Query 1315 AGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTATCAGAAAAGGGACATATTGCAT 1374
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 AGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTACCAGAAAAGGGACATATTGCAT 1374
Query 1375 CTAGAAGCAAACTCAGGTCTTCGAATTCTAACTTGTTTGCACAAACCAGAAAACGTCTCG 1434
|||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1375 CTAGAACCAAACTCAGATCTTCGAATTCTAACTTGTTTGTACAAACAAGAAAACGTCTCT 1434
Query 1435 GAGACCATAGCATTCCTCCAATTGTTTTCCTCACCGATACAT-GACTTCCCTATCGCGGT 1493
|||||||| ||| |||| |||||||| |||||||||| || | ||||||| |||| ||||
Sbjct 1435 GAGACCATTGCACTCCTTCAATTGTTGTCCTCACCGA-ACCTTGACTTCCTTATCACGGT 1493
Query 1494 CACAGTTCTCCACCTTGTGAAGCTAGTTGGTCAGATCAACCCTATCATAGTGTCACACGA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1494 CACAGTTCTCCACCTTGTGAAGCTAGTTGGTCAGATCAACCCTATCATAGTCTCACACGA 1553
Query 1554 CAAGAAGTTGAAGCGGCTTCACAAAAACTCGTACATCCATACCGCAAATCTTGCCTTTAG 1613
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1554 CAAGAAGTTGAAAAGGCTTCACAAAAACTCATACATCCATACCGCAAACCTTGCCTTTAG 1613
Query 1614 ACAGTTCATGCAAGAAAGCTTAGAGTCTGTAACCGTGACTACGTTCACCGCGTTCTCGCA 1673
|||||||||| |||||| ||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 1614 ACAGTTCATGGAAGAAACCTTAGCGTCTGTAACCGTGACAACGTTCACCGCTTTCTCGCA 1673
Query 1674 TGAAAACTTGATGCACGAAGACATATGTACACTTGCACTTGATCGAACAACATCGATGAT 1733
||| |||||||||||||||||||| || |||||||||||||| || || |||||||||||
Sbjct 1674 TGAGAACTTGATGCACGAAGACATTTGCACACTTGCACTTGACCGGACGACATCGATGAT 1733
Query 1734 TGTCGTCCCATCGGGGAGGAAATGGACCGTAGATGGGATGTTCGAGTCTGACGACCTTGC 1793
| |||||||||||||||||||||||||| |||||||||| || |||||||||||| |||
Sbjct 1734 TATCGTCCCATCGGGGAGGAAATGGACCATAGATGGGATCTTTGAGTCTGACGACAATGC 1793
Query 1794 TGCAAGACA-ACTAAACCAGTCATTACTCGATCGTGCGCCTTGTTCGATAGGCATACTAG 1852
|||||| | ||||| |||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1794 CATAAGACATA-TAAACAAGTCATTACTCGATAGTGCGCCTTGTTCTATAGGCATTCTAG 1852
Query 1853 TAGATCGTGGACAATTCTCGCGGAAAAGCTATGTAACGAGCAAGAATAGGTACAACATTG 1912
||||||| ||||| ||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1853 TAGATCGGGGACAGTTCTCGCGGAAAAGCAATGTAACAAGCAAGTATAGGTACAACATTG 1912
Query 1913 ATGTTGGTGTGCTCTTCATTGGAGGCAAAGACGATAGGGAGGCACTATCATTGGTGAAGA 1972
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1913 ATGTCGGTGTACTATTCATTGGAGGCAAAGACGATAGGGAGGCACTATCATTGGTGAAAA 1972
Query 1973 GGATGAAATATAACCCGCGGGTCCGTGTAACCGTGATCCGACTCATCTTCGACCATGAAA 2032
|||||||| ||||| || |||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1973 GGATGAAACATAACACGAGGGTTCGTGTAACCCTGATTCGACTCATCTTCGACCATGAAA 2032
Query 2033 TAGAGTCAGAGTGGGACTATATTCTTGATAACGAGGGCCTGAAGGATTTAAAGAGTACTG 2092
|||||||||| ||||||||| ||||||||||||| ||| | |||||||| | ||||||||
Sbjct 2033 TAGAGTCAGATTGGGACTATGTTCTTGATAACGAAGGCATAAAGGATTTGATGAGTACTG 2092
Query 2093 AATCCAATGAAGATATTCTTTATACAGAGAGGATTGTGA-CTAGTG-TCGTTGAGGTAGT 2150
|| ||| |||||||| |||||||||||||||| |||| | |||| | |||||||||||
Sbjct 2093 AAGACAACAAAGATATTGTTTATACAGAGAGGATAGTGAAC-AGTGGT-GTTGAGGTAGT 2150
Query 2151 CAAAGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGGGAGAGATCATGA 2210
|||||||||||||||||||||| ||||||||||||| |||||||| || |||||||||||
Sbjct 2151 CAAAGCTGTCCAATTGCTTGCAAAAGAGTACGATCTTATGGTGGTTGGCAGAGATCATGA 2210
Query 2211 TATGACATCACAAGACTTATCAGGACTAACGGAATGGGTCGAACTACCAGAGTTAGGTGT 2270
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2211 TATGACATCACAAGACTTATCAGGACTAATGGAATGGGTCGAACTACCAGAGTTAGGTGT 2270
Query 2271 CATCGGGGATTTGCTGGCGGCTAGAGATCTAAACTCTAAGGTCTCGGTTTTAGTAGTTca 2330
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2271 CATCGGGGATTTGCTGGCGGCTAGAGATCTAAGCTCTAAGATCTCGGTTTTAGTAGTTCA 2330
Query 2331 acaacaacaacaacaaacGTGA 2352
|||||||||||||||||| |||
Sbjct 2331 ACAACAACAACAACAAACCTGA 2352
> Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718
Length=2127
Score = 1474 bits (798), Expect = 0.0
Identities = 1052/1172 (90%), Gaps = 28/1172 (2%)
Strand=Plus/Plus
Query 1 ATGAACACGACTACTTACATTGGGCATTGCCGGATATCATTCTTCAACATATCTTCTCAG 60
||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 1 ATGAACAGGACTACCTACATTGGGGATTGCCGAATATCATTCTTCAACATATCTTCTAAG 60
Query 61 GGATTTTGGGAGAACCTAAAATCGCCTGATGTGGTTTTCGGGTACTCGTTGCCTCTCCTG 120
|||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||
Sbjct 61 GGATTTTGGGAGAACCTAAAATCGCCCGATGTAGTTTTTGGGTACTCGCTGCCTCTCCTG 120
Query 121 GAGATTCAAATAA-TATTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGATG 179
||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GAGATTCAAATAATTGTT-ATATTCTTCTGCATTGTCATGTCTCACATGTTCCTCAGATG 179
Query 180 CATCGGCGTTTCCCAGATCGTTTCATATATGATTGCTGGACTAATTCTAGGGCCTCAGCT 239
||| ||| |||||||||| | ||| |||| | | | | | | ||
Sbjct 180 CATTGGCATTTCCCAGATTGCTTC--ATAT-A----T-G----A---T------T---CT 215
Query 240 TTTCGATATACTAGAGAAGTCTTCAGGAAAACTATCGGCGGATCCTGCGTTGGATGGAAC 299
|||||||||||| ||||| |||||||| |||||||||| |||||||||||| ||||||||
Sbjct 216 TTTCGATATACTGGAGAAATCTTCAGGGAAACTATCGGTGGATCCTGCGTTAGATGGAAC 275
Query 300 CGCAGCGTTAAGATGCATTTCAGTATTTGGAAGACTAATGTTTACGTTTCTAATGACTGT 359
|| |||||||||||||| || || ||||||| |||||||||||||||||||||||||||
Sbjct 276 TGCGGCGTTAAGATGCATCTCGGTGTTTGGAACACTAATGTTTACGTTTCTAATGACTGT 335
Query 360 TAGGACCAGCAGGCGGGTGGCGTTCCATAGCGGAAAATTGCCAGTTGTGATCGGGATCGT 419
||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||| ||
Sbjct 336 TAGAACCAGCAGACGAGTGGCGTTCCATAGCGGAAAACTACCCGTTGTAATCGGGATTGT 395
Query 420 GTCCTTCTTTGCTCCTTTGTTTAGTCTCAGTTTCCTGAACCTTTTCACTGACAACATCGA 479
|||||||||||||||| |||| ||||| |||||| |||||||||| |||||||||||||
Sbjct 396 GTCCTTCTTTGCTCCTCTGTTCGGTCTCGGTTTCCAGAACCTTTTCTCTGACAACATCGA 455
Query 480 CCCTCACTACATGTCTTTAGACAAAGCCCTGGCCGAGCGCACTGTGATTGTCATAACTCA 539
||||||||||||| || |||| |||||||||| ||||||||||| ||||||| |||||||
Sbjct 456 CCCTCACTACATGCCTCTAGATAAAGCCCTGGGCGAGCGCACTGCGATTGTCGTAACTCA 515
Query 540 GTC-TCAGATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCAACT 598
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 516 GTCTTCA-ATACTTTTGCCTTCCACTACATATATCTTGCTAGAGCTCAAGATCATCAACT 574
Query 599 CCGAGCTTGGTCGCCTTGCATTATCTGCAAGTGCCATCAACGACATGTTGGGGATTTTTG 658
|||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||
Sbjct 575 CCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTCATCAACGACATCTTGGGGATTTTTT 634
Query 659 CCATGATAGTCGCCACTACACAAGCAACCTACATTCATGTTTCACATGCAATAGCTTACC 718
||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||| || |
Sbjct 635 CCATGATAGCCGCCTCTAGACAAGCAACCTACATTCATGTTTCACATGCAACAGCATATC 694
Query 719 GTGACCTTGTCGCGGTGATCATCTTCTTTCTCATCGTCttttttgtttttAAGCCGATGG 778
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 695 GTGACATTGTCGCGGTGATCATCTTCTTTCTCGTCGTCTTTCTTGTTTTTAAGCCGATGG 754
Query 779 TGCAATGGATCATAGACCGCACACCCGAAGACAAGCCCGTGGAGGATATATACATTCATG 838
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 755 TGCAATGGGTCATAGACCGCACACCGGAAGACAAGCCGGTGGAGGATATATACATTCATG 814
Query 839 CCGTGATTCTGACAGCATTTGCTTCCGCGGCTTATTTTGTGTTTTTCAACATGAAATACG 898
|| |||||||||| ||||| |||||||| | ||||||||||| ||||||||||||||||
Sbjct 815 CCTTGATTCTGACCGCATTCGCTTCCGCTGTTTATTTTGTGTCTTTCAACATGAAATACA 874
Query 899 TCTTAGGACCATTAATTATCGGCATCATCATACCAGAGGGTCCACCGTTAGGATCCGCTC 958
| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 875 TTTTAGGACCACTAATGATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCGGCTC 934
Query 959 TGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATCACATTCA 1018
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 935 TGGAGGCTAAGTTTGAGAGGCTCACGATGAATGTGTTCTTACCAATCTCAGTCACATTCA 994
Query 1019 GCGCGATGAGATGTGATGGACTAAGGATCCTTAGCCAGTTCACTGACATCTACTTCAACA 1078
|||||||||||||||||||| |||||||||| | || ||||||||||||| ||||||||
Sbjct 995 GCGCGATGAGATGTGATGGAGTAAGGATCCTCAATCATTTCACTGACATCTTCTTCAACA 1054
Query 1079 TCTTCCTAACATTGCTTATACTTGTCATAAAACTGGTTGCTTGCCTTACACTTTGCTTGT 1138
||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1055 TCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTTGCATGCCTTGCACCTTGCTTGT 1114
Query 1139 ACTACAAGTTACCTCGCAGTGAATCCTTGGCT 1170
||||||||||||||| || |||||| |||||
Sbjct 1115 ACTACAAGTTACCTCTTAGCGAATCCATGGCT 1146
Score = 488 bits (264), Expect = 7e-137
Identities = 347/386 (90%), Gaps = 9/386 (2%)
Strand=Plus/Plus
Query 1962 ATTGGTGAAGAGGATGAAATATAACCCGCGGGTCCGTGTAACCGTGATCCGACTCATCTT 2021
||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1741 ATTGG-GAAAAGGATGAAACATAACCCGAGGGTCCGTGTAACCGTGATCCGACTCGTCTT 1799
Query 2022 CGACCATGA-AATAGAGTCAGAGTGGGACTATATTCTT-GATAACGAGGGCCTGAAGGAT 2079
||||||| | |||||||||||||||||| |||||| || ||||| || ||| | ||||||
Sbjct 1800 CGACCAT-ATAATAGAGTCAGAGTGGGATTATATT-TTGGATAATGAAGGCTTAAAGGAT 1857
Query 2080 TTAAAGAGTACTGAATCCAATGAAGATATTCTTTATACAGAGAGGATTGTGACTAGT-GT 2138
|| |||||||| ||| ||| |||||||| |||||| |||||| |||||||| ||| ||
Sbjct 1858 TTGAAGAGTACAGAAGACAACAAAGATATTATTTATATAGAGAGAATTGTGACCAGTGGT 1917
Query 2139 CGTTGAGGTAGTCAAAGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGG 2198
||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1918 -GTTGAGGTAGTCACCGCTGTCCAATTGCTCGCCGAAGAGTACGATCTTATGGTGGTCGG 1976
Query 2199 GAGAGATCATGATATGACATCACAAGACTT-ATCAGGACTAACGGAATGGGTCGAACTAC 2257
||||||||||||||||||||||||| |||| | ||||||||| ||| ||||||||||| |
Sbjct 1977 GAGAGATCATGATATGACATCACAAAACTTGA-CAGGACTAATGGAGTGGGTCGAACTTC 2035
Query 2258 CAGAGTTAGGTGTCATCGGGGATTTGCTGGCGGCTAGAGATCTAAACTCTAAGGTCTCGG 2317
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2036 CAGAGTTAGGTGTCATTGGGGATTTGCTGGCGGCTAGAGATCTCAACTCTAAGGTCTCGG 2095
Query 2318 TTTTAGTAGTTcaacaacaacaacaa 2343
||||||||||||||||||||||||||
Sbjct 2096 TTTTAGTAGTTCAACAACAACAACAA 2121
Score = 486 bits (263), Expect = 3e-136
Identities = 360/406 (89%), Gaps = 10/406 (2%)
Strand=Plus/Plus
Query 1519 GTTGGTCAGATCAACCCTATCATAGTGTCACACGACAAGAAGTTGAAGCGGCTTCACAAA 1578
||||||||||||||||| |||||||| ||| || |||||| |||||| |||||| |||||
Sbjct 1345 GTTGGTCAGATCAACCCCATCATAGTCTCAAACAACAAGATGTTGAAACGGCTTAACAAA 1404
Query 1579 AACTCGTACATCCATACCGCAAATCTTGCCTTTAGACAGTTCATGCAAGAAAGCTTAGAG 1638
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1405 AACTCGTACATCCATACCGCAAACCTTGCCTTTAAACAGTTCATGCTAGAAAGCTTAGAC 1464
Query 1639 TCTGTAACCGTGACTACGTTCACCGCGTTCTCGCATGAAAACTTGATGCACGAAGACATA 1698
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1465 TCTGTAACCGTGACAACGTTCACCGCGTTCTCGCATGAGAACTTGATGCATGAAGACATT 1524
Query 1699 TGTACACTTGCACTTGATCGA-ACAACATCGATGATTGTCGTCCCATCGGGGAGGAAATG 1757
|| |||||||||||||| || | || ||||||||||| ||||||||||||||||||||
Sbjct 1525 TGCACACTTGCACTTGA-CGGGATGACTTCGATGATTGTAGTCCCATCGGGGAGGAAATG 1583
Query 1758 GACCGTAGATGGGATGTTCGAGTCTGACGACCTTGCTGCA--AGACAACTAAACCAGTCA 1815
|||| |||||||||||| |||||||||||| ||| || ||||| ||||||||||||
Sbjct 1584 GACCACAGATGGGATGTTTGAGTCTGACGACAATGC--CATTAGACATCTAAACCAGTCA 1641
Query 1816 TTACTCGATCGTGCGCCTTGTTCGATAGGCATACTAGTAGATCGTGGACAATTCTCGCGG 1875
||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
Sbjct 1642 TTACTAGATCGTGCGCCTTGTTCTATAGGCATATTAGTAGACCGTGGACAATTCTCGCAG 1701
Query 1876 AAAAGCTA-TGTAACGAGCAAGAATA-GGTACAACATTGATGTTGG 1919
||||| || ||||| ||||| || | |||||||||||||| ||||
Sbjct 1702 AAAAG-TAATGTAATAAGCAA-AAGAAGGTACAACATTGATATTGG 1745
Score = 224 bits (121), Expect = 2e-57
Identities = 164/184 (89%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 1242 CATATCACAGGCCACTTACGCGTTCTTAATCCTATATTCGCTACTAAGTG-CAGGG--AT 1298
||||||||||||||||||||| ||||||||||| ||||||||||||| || | ||| |
Sbjct 1149 CATATCACAGGCCACTTACGCCTTCTTAATCCTTTATTCGCTACTAAATGCCGGGGTTGT 1208
Query 1299 ---TGTCCCTATGGTCGTAAGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTATCA 1355
||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1209 CCGTGTCCCTATGGTCTTAAGGAGCATGTACGATCCGAAACGAAAGTACCTTAACTACCA 1268
Query 1356 GAAAAGGGACATATTGCATCTAGAAGCAAACTCAGGTCTTCGAATTCTAACTTGTTTGCA 1415
||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1269 GAAAAGGGACATACTGCATCTAGGACCAAACTCAGAACTTCGAATTCTAACTTGTTTGCA 1328
Query 1416 CAAA 1419
||||
Sbjct 1329 CAAA 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5