BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44920.1 Length=2352 Score E Sequences producing significant alignments: (Bits) Value Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973 3330 0.0 Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718 1474 0.0 > Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973 Length=2352 Score = 3330 bits (1803), Expect = 0.0 Identities = 2179/2362 (92%), Gaps = 20/2362 (1%) Strand=Plus/Plus Query 1 ATGAACACGACTACTTACATTGGGCATTGCCGGATATCATTCTTCAACATATCTTCTCAG 60 |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| || Sbjct 1 ATGAACACGACTACTTACATTGGGGATTGCCGAATATCATTATTCAACATATCTTCTAAG 60 Query 61 GGATTTTGGGAGAACCTAAAATCGCCT-GATGTGGTTTTCGGGTACTCGTTGCCTCTCCT 119 |||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct 61 GGATTTTGGGAGAACCTAAAATCG-CTCGATGTAGTTTTTGGGTACTCGTTGCCTCTCCT 119 Query 120 GGAGATTCAAATAATA-TTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGAT 178 |||||||||||||||| || |||||||| || |||||||||||||| ||||||||||||| Sbjct 120 GGAGATTCAAATAATACTT-ATATTCTTTTGTATTGTCATGTCTCACATGTTCCTCAGAT 178 Query 179 GCATCGGCGTTTCCCAGATCGTTTCATATATGATTGCTGGACTAATTCTAGGGCCTCAGC 238 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 179 GCATCGGCATTTCCCAGATCGTTTCATATATGATTGCTGGAATAATTCTAGGGCCTCAAC 238 Query 239 TTTTCGATATACTAGAGAAGTCTTCAGGA-AAACTATCGGCGGATCCTGCGTTGGATGGA 297 |||||||| |||| ||||| |||||| || |||||||||||||||||||||||||||||| Sbjct 239 TTTTCGATTTACTGGAGAATTCTTCA-GAGAAACTATCGGCGGATCCTGCGTTGGATGGA 297 Query 298 ACCGCAGCGTTAAGATGCATTTCAGTATTTGGAAGACTAATGTTTACGTTTCTAATGACT 357 || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 298 ACTGCGGCGTTAAGATGCATTTCGGTGTTTGGAAGACTAATGTTTACGTTTCTAATGACT 357 Query 358 GTTAGGACCAGCAGGCGGGTGGCGTTCCATAGCGGAAAATTGCCAGTTGTGATCGGGATC 417 ||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 358 GTTAGAACCAGCAGGCGAGTGGCGTTTCATAGCGGAAATTTGCCCGTTGTGATTGGGATC 417 Query 418 GTGTCCTTCTTTGCTCCTTTGTTTAGTCTCAGTTTCCTGAACCTTTTCACTGACAACATC 477 || ||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 418 GTTTCCTTCTTTGCTCCTCTGTTTGGTCTCGGTTTCGTGAACCTTTTCTCTGACAACATC 477 Query 478 GACCCTCACTACATGTCTTTAGACAAAGCCCTG-GCCGAGCGCACTGTGATTGTCATAAC 536 ||||||||||||||| || |||| ||||||||| | |||||||| || |||||||||||| Sbjct 478 GACCCTCACTACATGCCTCTAGATAAAGCCCTGAG-CGAGCGCATTGCGATTGTCATAAC 536 Query 537 TCAGTC-TCAGATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCA 595 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TCAATCTTC-GATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCA 595 Query 596 ACTCCGAGCTTGGTCGCCTTGCATTATCTGCAAGTGCCATCAACGACATGTTGGGGATTT 655 ||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||| Sbjct 596 ACTCCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTTATCAACGACATCTTGGGGATTT 655 Query 656 TTGCCATGATAGTCGCCACTACACAAGCAACCTACATTCATGTTTCACATGCAATAGCTT 715 |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| | Sbjct 656 TTGCCATGATGGTCGCCACTATACAAGCAACCTACATTCATGTTTCACATGCAACAGCCT 715 Query 716 ACCGTGACCTTGTCGCGGTGATCATCTTCTTTCTCATCGTCtttt-ttgtttttAAGCCG 774 | |||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||| Sbjct 716 ATCGTGACATTGTCGCAATGATCATCTTCTTTCTCATCGT-TTTTCTTGTTTTTAAGCCG 774 Query 775 ATGGTGCAATGGATCATAGACCGCACACCCGAAGACAAGCCCGTGGAGGATATATACATT 834 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 775 ATGGTGCAATGGATCATAGACCGCACACCCGAAGACAAGCCAGTGGAGGATATATATATT 834 Query 835 CATGCCGTGATTCTGACAGCATTTGCTTCCGCGGCTTATTTTGTGTTTTTCAACATGAAA 894 |||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||| Sbjct 835 CATGTCGTGATTCTGACTGTATTTGCTTCAGCGGCTTATTTTGTGTTTTTCAACATGAAA 894 Query 895 TACGTCTTAGGACCATTAATTATCGGCATCATCATACCAGAGGGTCCACCGTTAGGATCC 954 ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 895 TACATCTTAGGACCATTAATAATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCG 954 Query 955 GCTCTGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATCACA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 955 GCTCTGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATAACA 1014 Query 1015 TTCAGCGCGATGAGATGTGATGGACTAAGGATCCTTAGCCAGTTCACTGACATCTACTTC 1074 |||||||| ||||||||||||| | |||||||| ||||||||||||||||||||| |||| Sbjct 1015 TTCAGCGCAATGAGATGTGATGTAGTAAGGATCTTTAGCCAGTTCACTGACATCTTCTTC 1074 Query 1075 AACATCTTCCTAACATTGCTTATACTTGTCATAAAACTGGTTGCTTGCCTTACACTTTGC 1134 ||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||| Sbjct 1075 AACATCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTCGCATGCCTTACACCTTGC 1134 Query 1135 TTGTACTACAAGTTACCTCGCAGTGAATCCTTGGCTGTTTCCCTCATCTTAAGCTACAAA 1194 ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct 1135 TTGTACTACAAGTTACCTCTTAGTGAATCCATGGCTGTTTCCCTCATCTTGAGCTACAAA 1194 Query 1195 AGTTTTGTTGAATTCGTTCTCTATGAAGCTGTATTAGAAGAAAAGTTCATATCACAGGCC 1254 ||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | |||| Sbjct 1195 AGTTTTGTTGAATTCGTTCTCTATGAATCTGTATTAGAGGAAAAGTTGATATCGCTGGCC 1254 Query 1255 ACTTACGCGTTCTTAATCCTATATTCGCTACTAAGTGCAGGGATTGTCCCTATGGTCGTA 1314 |||||||||||||||||| ||||||| ||| ||| |||||||||||| ||||||||| || Sbjct 1255 ACTTACGCGTTCTTAATCATATATTCACTATTAAATGCAGGGATTGTTCCTATGGTCTTA 1314 Query 1315 AGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTATCAGAAAAGGGACATATTGCAT 1374 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1315 AGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTACCAGAAAAGGGACATATTGCAT 1374 Query 1375 CTAGAAGCAAACTCAGGTCTTCGAATTCTAACTTGTTTGCACAAACCAGAAAACGTCTCG 1434 |||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||| Sbjct 1375 CTAGAACCAAACTCAGATCTTCGAATTCTAACTTGTTTGTACAAACAAGAAAACGTCTCT 1434 Query 1435 GAGACCATAGCATTCCTCCAATTGTTTTCCTCACCGATACAT-GACTTCCCTATCGCGGT 1493 |||||||| ||| |||| |||||||| |||||||||| || | ||||||| |||| |||| Sbjct 1435 GAGACCATTGCACTCCTTCAATTGTTGTCCTCACCGA-ACCTTGACTTCCTTATCACGGT 1493 Query 1494 CACAGTTCTCCACCTTGTGAAGCTAGTTGGTCAGATCAACCCTATCATAGTGTCACACGA 1553 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1494 CACAGTTCTCCACCTTGTGAAGCTAGTTGGTCAGATCAACCCTATCATAGTCTCACACGA 1553 Query 1554 CAAGAAGTTGAAGCGGCTTCACAAAAACTCGTACATCCATACCGCAAATCTTGCCTTTAG 1613 |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1554 CAAGAAGTTGAAAAGGCTTCACAAAAACTCATACATCCATACCGCAAACCTTGCCTTTAG 1613 Query 1614 ACAGTTCATGCAAGAAAGCTTAGAGTCTGTAACCGTGACTACGTTCACCGCGTTCTCGCA 1673 |||||||||| |||||| ||||| ||||||||||||||| ||||||||||| |||||||| Sbjct 1614 ACAGTTCATGGAAGAAACCTTAGCGTCTGTAACCGTGACAACGTTCACCGCTTTCTCGCA 1673 Query 1674 TGAAAACTTGATGCACGAAGACATATGTACACTTGCACTTGATCGAACAACATCGATGAT 1733 ||| |||||||||||||||||||| || |||||||||||||| || || ||||||||||| Sbjct 1674 TGAGAACTTGATGCACGAAGACATTTGCACACTTGCACTTGACCGGACGACATCGATGAT 1733 Query 1734 TGTCGTCCCATCGGGGAGGAAATGGACCGTAGATGGGATGTTCGAGTCTGACGACCTTGC 1793 | |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||| Sbjct 1734 TATCGTCCCATCGGGGAGGAAATGGACCATAGATGGGATCTTTGAGTCTGACGACAATGC 1793 Query 1794 TGCAAGACA-ACTAAACCAGTCATTACTCGATCGTGCGCCTTGTTCGATAGGCATACTAG 1852 |||||| | ||||| |||||||||||||| ||||||||||||| |||||||| |||| Sbjct 1794 CATAAGACATA-TAAACAAGTCATTACTCGATAGTGCGCCTTGTTCTATAGGCATTCTAG 1852 Query 1853 TAGATCGTGGACAATTCTCGCGGAAAAGCTATGTAACGAGCAAGAATAGGTACAACATTG 1912 ||||||| ||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| Sbjct 1853 TAGATCGGGGACAGTTCTCGCGGAAAAGCAATGTAACAAGCAAGTATAGGTACAACATTG 1912 Query 1913 ATGTTGGTGTGCTCTTCATTGGAGGCAAAGACGATAGGGAGGCACTATCATTGGTGAAGA 1972 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1913 ATGTCGGTGTACTATTCATTGGAGGCAAAGACGATAGGGAGGCACTATCATTGGTGAAAA 1972 Query 1973 GGATGAAATATAACCCGCGGGTCCGTGTAACCGTGATCCGACTCATCTTCGACCATGAAA 2032 |||||||| ||||| || |||| ||||||||| |||| |||||||||||||||||||||| Sbjct 1973 GGATGAAACATAACACGAGGGTTCGTGTAACCCTGATTCGACTCATCTTCGACCATGAAA 2032 Query 2033 TAGAGTCAGAGTGGGACTATATTCTTGATAACGAGGGCCTGAAGGATTTAAAGAGTACTG 2092 |||||||||| ||||||||| ||||||||||||| ||| | |||||||| | |||||||| Sbjct 2033 TAGAGTCAGATTGGGACTATGTTCTTGATAACGAAGGCATAAAGGATTTGATGAGTACTG 2092 Query 2093 AATCCAATGAAGATATTCTTTATACAGAGAGGATTGTGA-CTAGTG-TCGTTGAGGTAGT 2150 || ||| |||||||| |||||||||||||||| |||| | |||| | ||||||||||| Sbjct 2093 AAGACAACAAAGATATTGTTTATACAGAGAGGATAGTGAAC-AGTGGT-GTTGAGGTAGT 2150 Query 2151 CAAAGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGGGAGAGATCATGA 2210 |||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||| Sbjct 2151 CAAAGCTGTCCAATTGCTTGCAAAAGAGTACGATCTTATGGTGGTTGGCAGAGATCATGA 2210 Query 2211 TATGACATCACAAGACTTATCAGGACTAACGGAATGGGTCGAACTACCAGAGTTAGGTGT 2270 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2211 TATGACATCACAAGACTTATCAGGACTAATGGAATGGGTCGAACTACCAGAGTTAGGTGT 2270 Query 2271 CATCGGGGATTTGCTGGCGGCTAGAGATCTAAACTCTAAGGTCTCGGTTTTAGTAGTTca 2330 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 2271 CATCGGGGATTTGCTGGCGGCTAGAGATCTAAGCTCTAAGATCTCGGTTTTAGTAGTTCA 2330 Query 2331 acaacaacaacaacaaacGTGA 2352 |||||||||||||||||| ||| Sbjct 2331 ACAACAACAACAACAAACCTGA 2352 > Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718 Length=2127 Score = 1474 bits (798), Expect = 0.0 Identities = 1052/1172 (90%), Gaps = 28/1172 (2%) Strand=Plus/Plus Query 1 ATGAACACGACTACTTACATTGGGCATTGCCGGATATCATTCTTCAACATATCTTCTCAG 60 ||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||| || Sbjct 1 ATGAACAGGACTACCTACATTGGGGATTGCCGAATATCATTCTTCAACATATCTTCTAAG 60 Query 61 GGATTTTGGGAGAACCTAAAATCGCCTGATGTGGTTTTCGGGTACTCGTTGCCTCTCCTG 120 |||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||| Sbjct 61 GGATTTTGGGAGAACCTAAAATCGCCCGATGTAGTTTTTGGGTACTCGCTGCCTCTCCTG 120 Query 121 GAGATTCAAATAA-TATTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGATG 179 ||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||| Sbjct 121 GAGATTCAAATAATTGTT-ATATTCTTCTGCATTGTCATGTCTCACATGTTCCTCAGATG 179 Query 180 CATCGGCGTTTCCCAGATCGTTTCATATATGATTGCTGGACTAATTCTAGGGCCTCAGCT 239 ||| ||| |||||||||| | ||| |||| | | | | | | || Sbjct 180 CATTGGCATTTCCCAGATTGCTTC--ATAT-A----T-G----A---T------T---CT 215 Query 240 TTTCGATATACTAGAGAAGTCTTCAGGAAAACTATCGGCGGATCCTGCGTTGGATGGAAC 299 |||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||| Sbjct 216 TTTCGATATACTGGAGAAATCTTCAGGGAAACTATCGGTGGATCCTGCGTTAGATGGAAC 275 Query 300 CGCAGCGTTAAGATGCATTTCAGTATTTGGAAGACTAATGTTTACGTTTCTAATGACTGT 359 || |||||||||||||| || || ||||||| ||||||||||||||||||||||||||| Sbjct 276 TGCGGCGTTAAGATGCATCTCGGTGTTTGGAACACTAATGTTTACGTTTCTAATGACTGT 335 Query 360 TAGGACCAGCAGGCGGGTGGCGTTCCATAGCGGAAAATTGCCAGTTGTGATCGGGATCGT 419 ||| |||||||| || ||||||||||||||||||||| | || ||||| |||||||| || Sbjct 336 TAGAACCAGCAGACGAGTGGCGTTCCATAGCGGAAAACTACCCGTTGTAATCGGGATTGT 395 Query 420 GTCCTTCTTTGCTCCTTTGTTTAGTCTCAGTTTCCTGAACCTTTTCACTGACAACATCGA 479 |||||||||||||||| |||| ||||| |||||| |||||||||| ||||||||||||| Sbjct 396 GTCCTTCTTTGCTCCTCTGTTCGGTCTCGGTTTCCAGAACCTTTTCTCTGACAACATCGA 455 Query 480 CCCTCACTACATGTCTTTAGACAAAGCCCTGGCCGAGCGCACTGTGATTGTCATAACTCA 539 ||||||||||||| || |||| |||||||||| ||||||||||| ||||||| ||||||| Sbjct 456 CCCTCACTACATGCCTCTAGATAAAGCCCTGGGCGAGCGCACTGCGATTGTCGTAACTCA 515 Query 540 GTC-TCAGATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCAACT 598 ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 516 GTCTTCA-ATACTTTTGCCTTCCACTACATATATCTTGCTAGAGCTCAAGATCATCAACT 574 Query 599 CCGAGCTTGGTCGCCTTGCATTATCTGCAAGTGCCATCAACGACATGTTGGGGATTTTTG 658 |||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||| Sbjct 575 CCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTCATCAACGACATCTTGGGGATTTTTT 634 Query 659 CCATGATAGTCGCCACTACACAAGCAACCTACATTCATGTTTCACATGCAATAGCTTACC 718 ||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||| || | Sbjct 635 CCATGATAGCCGCCTCTAGACAAGCAACCTACATTCATGTTTCACATGCAACAGCATATC 694 Query 719 GTGACCTTGTCGCGGTGATCATCTTCTTTCTCATCGTCttttttgtttttAAGCCGATGG 778 ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 695 GTGACATTGTCGCGGTGATCATCTTCTTTCTCGTCGTCTTTCTTGTTTTTAAGCCGATGG 754 Query 779 TGCAATGGATCATAGACCGCACACCCGAAGACAAGCCCGTGGAGGATATATACATTCATG 838 |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 755 TGCAATGGGTCATAGACCGCACACCGGAAGACAAGCCGGTGGAGGATATATACATTCATG 814 Query 839 CCGTGATTCTGACAGCATTTGCTTCCGCGGCTTATTTTGTGTTTTTCAACATGAAATACG 898 || |||||||||| ||||| |||||||| | ||||||||||| |||||||||||||||| Sbjct 815 CCTTGATTCTGACCGCATTCGCTTCCGCTGTTTATTTTGTGTCTTTCAACATGAAATACA 874 Query 899 TCTTAGGACCATTAATTATCGGCATCATCATACCAGAGGGTCCACCGTTAGGATCCGCTC 958 | ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 875 TTTTAGGACCACTAATGATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCGGCTC 934 Query 959 TGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATCACATTCA 1018 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 935 TGGAGGCTAAGTTTGAGAGGCTCACGATGAATGTGTTCTTACCAATCTCAGTCACATTCA 994 Query 1019 GCGCGATGAGATGTGATGGACTAAGGATCCTTAGCCAGTTCACTGACATCTACTTCAACA 1078 |||||||||||||||||||| |||||||||| | || ||||||||||||| |||||||| Sbjct 995 GCGCGATGAGATGTGATGGAGTAAGGATCCTCAATCATTTCACTGACATCTTCTTCAACA 1054 Query 1079 TCTTCCTAACATTGCTTATACTTGTCATAAAACTGGTTGCTTGCCTTACACTTTGCTTGT 1138 ||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| Sbjct 1055 TCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTTGCATGCCTTGCACCTTGCTTGT 1114 Query 1139 ACTACAAGTTACCTCGCAGTGAATCCTTGGCT 1170 ||||||||||||||| || |||||| ||||| Sbjct 1115 ACTACAAGTTACCTCTTAGCGAATCCATGGCT 1146 Score = 488 bits (264), Expect = 7e-137 Identities = 347/386 (90%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 1962 ATTGGTGAAGAGGATGAAATATAACCCGCGGGTCCGTGTAACCGTGATCCGACTCATCTT 2021 ||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 1741 ATTGG-GAAAAGGATGAAACATAACCCGAGGGTCCGTGTAACCGTGATCCGACTCGTCTT 1799 Query 2022 CGACCATGA-AATAGAGTCAGAGTGGGACTATATTCTT-GATAACGAGGGCCTGAAGGAT 2079 ||||||| | |||||||||||||||||| |||||| || ||||| || ||| | |||||| Sbjct 1800 CGACCAT-ATAATAGAGTCAGAGTGGGATTATATT-TTGGATAATGAAGGCTTAAAGGAT 1857 Query 2080 TTAAAGAGTACTGAATCCAATGAAGATATTCTTTATACAGAGAGGATTGTGACTAGT-GT 2138 || |||||||| ||| ||| |||||||| |||||| |||||| |||||||| ||| || Sbjct 1858 TTGAAGAGTACAGAAGACAACAAAGATATTATTTATATAGAGAGAATTGTGACCAGTGGT 1917 Query 2139 CGTTGAGGTAGTCAAAGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGG 2198 ||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct 1918 -GTTGAGGTAGTCACCGCTGTCCAATTGCTCGCCGAAGAGTACGATCTTATGGTGGTCGG 1976 Query 2199 GAGAGATCATGATATGACATCACAAGACTT-ATCAGGACTAACGGAATGGGTCGAACTAC 2257 ||||||||||||||||||||||||| |||| | ||||||||| ||| ||||||||||| | Sbjct 1977 GAGAGATCATGATATGACATCACAAAACTTGA-CAGGACTAATGGAGTGGGTCGAACTTC 2035 Query 2258 CAGAGTTAGGTGTCATCGGGGATTTGCTGGCGGCTAGAGATCTAAACTCTAAGGTCTCGG 2317 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 2036 CAGAGTTAGGTGTCATTGGGGATTTGCTGGCGGCTAGAGATCTCAACTCTAAGGTCTCGG 2095 Query 2318 TTTTAGTAGTTcaacaacaacaacaa 2343 |||||||||||||||||||||||||| Sbjct 2096 TTTTAGTAGTTCAACAACAACAACAA 2121 Score = 486 bits (263), Expect = 3e-136 Identities = 360/406 (89%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 1519 GTTGGTCAGATCAACCCTATCATAGTGTCACACGACAAGAAGTTGAAGCGGCTTCACAAA 1578 ||||||||||||||||| |||||||| ||| || |||||| |||||| |||||| ||||| Sbjct 1345 GTTGGTCAGATCAACCCCATCATAGTCTCAAACAACAAGATGTTGAAACGGCTTAACAAA 1404 Query 1579 AACTCGTACATCCATACCGCAAATCTTGCCTTTAGACAGTTCATGCAAGAAAGCTTAGAG 1638 ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| Sbjct 1405 AACTCGTACATCCATACCGCAAACCTTGCCTTTAAACAGTTCATGCTAGAAAGCTTAGAC 1464 Query 1639 TCTGTAACCGTGACTACGTTCACCGCGTTCTCGCATGAAAACTTGATGCACGAAGACATA 1698 |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1465 TCTGTAACCGTGACAACGTTCACCGCGTTCTCGCATGAGAACTTGATGCATGAAGACATT 1524 Query 1699 TGTACACTTGCACTTGATCGA-ACAACATCGATGATTGTCGTCCCATCGGGGAGGAAATG 1757 || |||||||||||||| || | || ||||||||||| |||||||||||||||||||| Sbjct 1525 TGCACACTTGCACTTGA-CGGGATGACTTCGATGATTGTAGTCCCATCGGGGAGGAAATG 1583 Query 1758 GACCGTAGATGGGATGTTCGAGTCTGACGACCTTGCTGCA--AGACAACTAAACCAGTCA 1815 |||| |||||||||||| |||||||||||| ||| || ||||| |||||||||||| Sbjct 1584 GACCACAGATGGGATGTTTGAGTCTGACGACAATGC--CATTAGACATCTAAACCAGTCA 1641 Query 1816 TTACTCGATCGTGCGCCTTGTTCGATAGGCATACTAGTAGATCGTGGACAATTCTCGCGG 1875 ||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||||| | Sbjct 1642 TTACTAGATCGTGCGCCTTGTTCTATAGGCATATTAGTAGACCGTGGACAATTCTCGCAG 1701 Query 1876 AAAAGCTA-TGTAACGAGCAAGAATA-GGTACAACATTGATGTTGG 1919 ||||| || ||||| ||||| || | |||||||||||||| |||| Sbjct 1702 AAAAG-TAATGTAATAAGCAA-AAGAAGGTACAACATTGATATTGG 1745 Score = 224 bits (121), Expect = 2e-57 Identities = 164/184 (89%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1242 CATATCACAGGCCACTTACGCGTTCTTAATCCTATATTCGCTACTAAGTG-CAGGG--AT 1298 ||||||||||||||||||||| ||||||||||| ||||||||||||| || | ||| | Sbjct 1149 CATATCACAGGCCACTTACGCCTTCTTAATCCTTTATTCGCTACTAAATGCCGGGGTTGT 1208 Query 1299 ---TGTCCCTATGGTCGTAAGGAGCATGTACGATCCGAAACGAAAGTACGTTAATTATCA 1355 ||||||||||||| |||||||||||||||||||||||||||||||| |||| || || Sbjct 1209 CCGTGTCCCTATGGTCTTAAGGAGCATGTACGATCCGAAACGAAAGTACCTTAACTACCA 1268 Query 1356 GAAAAGGGACATATTGCATCTAGAAGCAAACTCAGGTCTTCGAATTCTAACTTGTTTGCA 1415 ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||| Sbjct 1269 GAAAAGGGACATACTGCATCTAGGACCAAACTCAGAACTTCGAATTCTAACTTGTTTGCA 1328 Query 1416 CAAA 1419 |||| Sbjct 1329 CAAA 1332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88597909870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5