BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44930.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973 3219 0.0
Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718 1580 0.0
> Ahg347581 jgi|Araly1|347581|fgenesh1_pg.C_scaffold_5000973
Length=2352
Score = 3219 bits (1743), Expect = 0.0
Identities = 2156/2359 (91%), Gaps = 14/2359 (1%)
Strand=Plus/Plus
Query 1 ATGAACACGACTACTTACATTGGGGATTGTCGAATATCATTCTTCAACATATCTTCCCAG 60
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1 ATGAACACGACTACTTACATTGGGGATTGCCGAATATCATTATTCAACATATCTTCTAAG 60
Query 61 GGATTTTGGGATAACCTAAAATCGCCT-GATGTGGTTTTCGGCTACTCGCTGCCTCTCCT 119
||||||||||| |||||||||||| || ||||| ||||| || |||||| ||||||||||
Sbjct 61 GGATTTTGGGAGAACCTAAAATCG-CTCGATGTAGTTTTTGGGTACTCGTTGCCTCTCCT 119
Query 120 AGAGATTCAGATAATACTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGATG 179
|||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 120 GGAGATTCAAATAATACTTATATTCTTTTGTATTGTCATGTCTCACATGTTCCTCAGATG 179
Query 180 CATCGGCATTTCCCAAATCGCTTCATATATGATTGCTGGAATAGTTCTAGGGCCTCAGCT 239
||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 180 CATCGGCATTTCCCAGATCGTTTCATATATGATTGCTGGAATAATTCTAGGGCCTCAACT 239
Query 240 TTTTGATGTACTAGAGAAATCTTCAGGGAAACTATCCGTGGATCCTGCGTTGGATGGAAT 299
||| ||| |||| ||||| ||||||| ||||||||| | ||||||||||||||||||||
Sbjct 240 TTTCGATTTACTGGAGAATTCTTCAGAGAAACTATCGGCGGATCCTGCGTTGGATGGAA- 298
Query 300 C-GCAGCGTTAAGATGCATCTCGGTGTTTGGAACACTAATGTTTACGTTTCTAATGACTG 358
| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 CTGCGGCGTTAAGATGCATTTCGGTGTTTGGAAGACTAATGTTTACGTTTCTAATGACTG 358
Query 359 TTAGAACCAGCAGGCGAGTGGCGTTCCATAGCGGAAAATTGCCCGTTGTGATCGGGATCG 418
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 359 TTAGAACCAGCAGGCGAGTGGCGTTTCATAGCGGAAATTTGCCCGTTGTGATTGGGATCG 418
Query 419 TGTCCTTCTTTGCTCCTCTGTTTGGTCTCGGTTTCCAGAAttttttttCTGACAACATCG 478
| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 419 TTTCCTTCTTTGCTCCTCTGTTTGGTCTCGGTTTCGTGAACCTTTTCTCTGACAACATCG 478
Query 479 ACCCTCACTACATGCCTCTA-ACTAAAGCCCTAG-GTGAGCGCACTGCGATTGTCATAAC 536
|||||||||||||||||||| | ||||||||| | | ||||||| |||||||||||||||
Sbjct 479 ACCCTCACTACATGCCTCTAGA-TAAAGCCCT-GAGCGAGCGCATTGCGATTGTCATAAC 536
Query 537 TCAATCTTCGATACTTTTGCCTTCCACTACATATATCTTGCTAGAGCTCAAGATCATCAA 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 TCAATCTTCGATACTTTTGCCTTCCACTACATATATATTGCTAGAGCTCAAGATCATCAA 596
Query 597 CTCCGAGCTAGGTCGCCTTGCATTGTCTGCATGTGTCATCAACGACATCTTGGGGATTTT 656
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 597 CTCCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTTATCAACGACATCTTGGGGATTTT 656
Query 657 TTCCATGATAGTTGCCTCTATACAAGCGACCTACATTCATGTTTCACATGCAACAGCCTA 716
| ||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 TGCCATGATGGTCGCCACTATACAAGCAACCTACATTCATGTTTCACATGCAACAGCCTA 716
Query 717 TCGTGACACTGTCGCGGTGATCATCTTTTTTCTCGTCGTCTTTCTTGTTTTTAAGCCTAT 776
|||||||| |||||| |||||||||| |||||| |||| ||||||||||||||||| ||
Sbjct 717 TCGTGACATTGTCGCAATGATCATCTTCTTTCTCATCGTTTTTCTTGTTTTTAAGCCGAT 776
Query 777 GGTGCAATGGGTCATAGACCGCACACCGGAAGACAAGCCAGTGGAGGATATGTACATTCA 836
|||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 777 GGTGCAATGGATCATAGACCGCACACCCGAAGACAAGCCAGTGGAGGATATATATATTCA 836
Query 837 TGCCGTGATTATTACCGCATTGGCTTCCGCTGCTTATTTTGTGTTTTTCAACATGAAATA 896
|| ||||||| | || | ||| ||||| || |||||||||||||||||||||||||||||
Sbjct 837 TGTCGTGATTCTGACTGTATTTGCTTCAGCGGCTTATTTTGTGTTTTTCAACATGAAATA 896
Query 897 TATTTTAGGACCATTAATGATTGGCATCATCATACCAGAGGGTCCACCATTAGGATCGGC 956
|| |||||||||||||| || |||||||||||||| ||||||||||| |||||||||||
Sbjct 897 CATCTTAGGACCATTAATAATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCGGC 956
Query 957 TCTAGAGGCTAAGTTTGAGAGGCTCACAATGAACGTGTTCTTACCAATCTCAATCACATT 1016
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 957 TCTGGAGGCTAAGTTTGAGAGGCTCACGATGAACGTGTTCTTACCAATCTCAATAACATT 1016
Query 1017 CAGCGCGATGAGATGTGATGGAGCAAGGATCCTTAGCCAGTTCAATGACATCTTCTTCAA 1076
|||||| ||||||||||||| || ||||||| |||||||||||| |||||||||||||||
Sbjct 1017 CAGCGCAATGAGATGTGATGTAGTAAGGATCTTTAGCCAGTTCACTGACATCTTCTTCAA 1076
Query 1077 CATCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTCGCATGCCTTGCACCTTGCTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 CATCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTCGCATGCCTTACACCTTGCTT 1136
Query 1137 GTACTACAAGTTACCTCTCAGTGAATCCTTGGCTGTTTCCTTCATCTTGAGCTACAAAAG 1196
|||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1137 GTACTACAAGTTACCTCTTAGTGAATCCATGGCTGTTTCCCTCATCTTGAGCTACAAAAG 1196
Query 1197 TTTTGCTGATTTTGTTCTCTATGAAGCTGTATTAGACGACACGTACATATCGCAAGCCAC 1256
||||| ||| || |||||||||||| |||||||||| || | || ||||||| |||||
Sbjct 1197 TTTTGTTGAATTCGTTCTCTATGAATCTGTATTAGAGGAAAAGTTGATATCGCTGGCCAC 1256
Query 1257 TTACTCGTTCTTAATCTTATATTCGCTACTAAATGCCGGGATTGTCCCTACT-GTCTTAA 1315
|||| ||||||||||| ||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct 1257 TTACGCGTTCTTAATCATATATTCACTATTAAATGCAGGGATTGTTCCTA-TGGTCTTAA 1315
Query 1316 GGAGGATGTACGATCC-AAGAAGAAAGTACGTTAATTACCAGAAAAGGGACATATTGCAT 1374
|||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGAGCATGTACGATCCGAA-ACGAAAGTACGTTAATTACCAGAAAAGGGACATATTGCAT 1374
Query 1375 CTAGAACGAAACTCAGATCTTCGAATTCTAACTTGTTTGCACAAACCAGAAAACGTCTCA 1434
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1375 CTAGAACCAAACTCAGATCTTCGAATTCTAACTTGTTTGTACAAACAAGAAAACGTCTCT 1434
Query 1435 GAGACCATAGCATTCCTACAATTGTTGTCCTCACCGAACCTAGACTTCCCTATCGCGGTT 1494
|||||||| ||| |||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 1435 GAGACCATTGCACTCCTTCAATTGTTGTCCTCACCGAACCTTGACTTCCTTATCACGGTC 1494
Query 1495 ACAGTTCTCCACCTTGTGAAGCTCGTTGGTCAGATAAACCCTATCATAGTCTCACACGAC 1554
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1495 ACAGTTCTCCACCTTGTGAAGCTAGTTGGTCAGATCAACCCTATCATAGTCTCACACGAC 1554
Query 1555 AAGAAATTGAAACGGCTTAACAAAGACTCATACATCCATACCGCAAACCTTGCCTTTAGA 1614
||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGAAGTTGAAAAGGCTTCACAAAAACTCATACATCCATACCGCAAACCTTGCCTTTAGA 1614
Query 1615 CAATTCGTGTTAGAAAGCTTAGAGTCTGTAACCGTGACAACGTTCACTGCGTTCTCGCAT 1674
|| ||| || ||||| ||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1615 CAGTTCATGGAAGAAACCTTAGCGTCTGTAACCGTGACAACGTTCACCGCTTTCTCGCAT 1674
Query 1675 GAAAACTTGATGCACGAAGACATTTGTACACTTGCACTTGACAAAACAACATCGATGATT 1734
|| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 1675 GAGAACTTGATGCACGAAGACATTTGCACACTTGCACTTGACCGGACGACATCGATGATT 1734
Query 1735 GTCGTCCCATCGGGGAGGAAATGGACTGTAGATGGGTTATTCGAGTCTGACAACACTGCT 1794
||||||||||||||||||||||||| |||||||| | || ||||||||| ||| |||
Sbjct 1735 ATCGTCCCATCGGGGAGGAAATGGACCATAGATGGGATCTTTGAGTCTGACGACAATGCC 1794
Query 1795 ATAAGACATCTAAACCAGTCGTTACTCGATCGTGCGCCTTGTTCTATCGGCATACTAGTA 1854
||||||||| ||||| |||| ||||||||| |||||||||||||||| ||||| ||||||
Sbjct 1795 ATAAGACATATAAACAAGTCATTACTCGATAGTGCGCCTTGTTCTATAGGCATTCTAGTA 1854
Query 1855 GACCGTGGACAATTCTCGCGAAAAAGTATTGTAACGAGCaaaaaaaGGTACATCATTGAT 1914
|| || ||||| |||||||| ||||| | |||||| ||||| | ||||||| |||||||
Sbjct 1855 GATCGGGGACAGTTCTCGCGGAAAAGCAATGTAACAAGCAAGTATAGGTACAACATTGAT 1914
Query 1915 GTTGGTGTGCTCTTCATTGGAGGCAAAGACGATAGGGAAGCACTATCATTGGTGAAGAGG 1974
|| ||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1915 GTCGGTGTACTATTCATTGGAGGCAAAGACGATAGGGAGGCACTATCATTGGTGAAAAGG 1974
Query 1975 ATGAAAAATAACCCGAGGATCCGTGTAACCGTGATCCGACTCGTCTTCGACCATGAAATA 2034
|||||| ||||| ||||| | ||||||||| |||| |||||| |||||||||||||||||
Sbjct 1975 ATGAAACATAACACGAGGGTTCGTGTAACCCTGATTCGACTCATCTTCGACCATGAAATA 2034
Query 2035 GAGTCAGATTGGGATTATATTCTTGATAACGAAGGCTTAAAGGATTTGAAGAGTACTGAA 2094
|||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2035 GAGTCAGATTGGGACTATGTTCTTGATAACGAAGGCATAAAGGATTTGATGAGTACTGAA 2094
Query 2095 GACAACAAAGATATTGATTATATAGAGAGGATTGTG-ACTAGTAGTGTTGAGGTAGTCAA 2153
|||||||||||||||| ||||| ||||||||| ||| || ||| ||||||||||||||||
Sbjct 2095 GACAACAAAGATATTGTTTATACAGAGAGGATAGTGAAC-AGTGGTGTTGAGGTAGTCAA 2153
Query 2154 AGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGGGAGAGATCATGATAT 2213
||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||
Sbjct 2154 AGCTGTCCAATTGCTTGCAAAAGAGTACGATCTTATGGTGGTTGGCAGAGATCATGATAT 2213
Query 2214 GACATCACAAGACTTATCAGGACTAATGGAATGGGTCGAACTACCAGAGTTAGGTGTCAT 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GACATCACAAGACTTATCAGGACTAATGGAATGGGTCGAACTACCAGAGTTAGGTGTCAT 2273
Query 2274 CGGGGATTTGCTGGCGGCTAGAGATCTAAGCTCTAAGGTTTCGGTTTTAGTAGTTCAACA 2333
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2274 CGGGGATTTGCTGGCGGCTAGAGATCTAAGCTCTAAGATCTCGGTTTTAGTAGTTCAACA 2333
Query 2334 ACAACAACAACGAACGTGA 2352
||||||||||| ||| |||
Sbjct 2334 ACAACAACAACAAACCTGA 2352
> Ahg323174 jgi|Araly1|323174|fgenesh1_pm.C_scaffold_5000718
Length=2127
Score = 1580 bits (855), Expect = 0.0
Identities = 1071/1172 (91%), Gaps = 28/1172 (2%)
Strand=Plus/Plus
Query 1 ATGAACACGACTACTTACATTGGGGATTGTCGAATATCATTCTTCAACATATCTTCCCAG 60
||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGAACAGGACTACCTACATTGGGGATTGCCGAATATCATTCTTCAACATATCTTCTAAG 60
Query 61 GGATTTTGGGATAACCTAAAATCGCCTGATGTGGTTTTCGGCTACTCGCTGCCTCTCCTA 120
||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 61 GGATTTTGGGAGAACCTAAAATCGCCCGATGTAGTTTTTGGGTACTCGCTGCCTCTCCTG 120
Query 121 GAGATTCAGATAATACTGATATTCTTCTGCATTGTCATGTCTCATATGTTCCTCAGATGC 180
|||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GAGATTCAAATAATTGTTATATTCTTCTGCATTGTCATGTCTCACATGTTCCTCAGATGC 180
Query 181 ATCGGCATTTCCCAAATCGCTTCATATATGATTGCTGGAATAGTTCTAGGGCCTCAGCTT 240
|| ||||||||||| || ||||||||||||||| || | ||| | |
Sbjct 181 ATTGGCATTTCCCAGATTGCTTCATATATGATT-CT----T--TTC----G----A---- 221
Query 241 TTTGATGTACTAGAGAAATCTTCAGGGAAACTATCCGTGGATCCTGCGTTGGATGGAATC 300
| | |||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 222 --T-A--TACTGGAGAAATCTTCAGGGAAACTATCGGTGGATCCTGCGTTAGATGGAA-C 275
Query 301 -GCAGCGTTAAGATGCATCTCGGTGTTTGGAACACTAATGTTTACGTTTCTAATGACTGT 359
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TGCGGCGTTAAGATGCATCTCGGTGTTTGGAACACTAATGTTTACGTTTCTAATGACTGT 335
Query 360 TAGAACCAGCAGGCGAGTGGCGTTCCATAGCGGAAAATTGCCCGTTGTGATCGGGATCGT 419
|||||||||||| |||||||||||||||||||||||| | |||||||| |||||||| ||
Sbjct 336 TAGAACCAGCAGACGAGTGGCGTTCCATAGCGGAAAACTACCCGTTGTAATCGGGATTGT 395
Query 420 GTCCTTCTTTGCTCCTCTGTTTGGTCTCGGTTTCCAGAAttttttttCTGACAACATCGA 479
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 396 GTCCTTCTTTGCTCCTCTGTTCGGTCTCGGTTTCCAGAACCTTTTCTCTGACAACATCGA 455
Query 480 CCCTCACTACATGCCTCTA-ACTAAAGCCCTAGGTGAGCGCACTGCGATTGTCATAACTC 538
||||||||||||||||||| | ||||||||| || |||||||||||||||||| ||||||
Sbjct 456 CCCTCACTACATGCCTCTAGA-TAAAGCCCTGGGCGAGCGCACTGCGATTGTCGTAACTC 514
Query 539 AATCTTCGATACTTTTGCCTTCCACTACATATATCTTGCTAGAGCTCAAGATCATCAACT 598
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AGTCTTCAATACTTTTGCCTTCCACTACATATATCTTGCTAGAGCTCAAGATCATCAACT 574
Query 599 CCGAGCTAGGTCGCCTTGCATTGTCTGCATGTGTCATCAACGACATCTTGGGGATTTTTT 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCGAGCTTGGTCGCCTTGCATTGTCTGCATGTGTCATCAACGACATCTTGGGGATTTTTT 634
Query 659 CCATGATAGTTGCCTCTATACAAGCGACCTACATTCATGTTTCACATGCAACAGCCTATC 718
||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 635 CCATGATAGCCGCCTCTAGACAAGCAACCTACATTCATGTTTCACATGCAACAGCATATC 694
Query 719 GTGACACTGTCGCGGTGATCATCTTTTTTCTCGTCGTCTTTCTTGTTTTTAAGCCTATGG 778
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 695 GTGACATTGTCGCGGTGATCATCTTCTTTCTCGTCGTCTTTCTTGTTTTTAAGCCGATGG 754
Query 779 TGCAATGGGTCATAGACCGCACACCGGAAGACAAGCCAGTGGAGGATATGTACATTCATG 838
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 755 TGCAATGGGTCATAGACCGCACACCGGAAGACAAGCCGGTGGAGGATATATACATTCATG 814
Query 839 CCGTGATTATTACCGCATTGGCTTCCGCTGCTTATTTTGTGTTTTTCAACATGAAATATA 898
|| ||||| | |||||||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct 815 CCTTGATTCTGACCGCATTCGCTTCCGCTGTTTATTTTGTGTCTTTCAACATGAAATACA 874
Query 899 TTTTAGGACCATTAATGATTGGCATCATCATACCAGAGGGTCCACCATTAGGATCGGCTC 958
||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 875 TTTTAGGACCACTAATGATCGGCATCATCATACCTGAGGGTCCACCGTTAGGATCGGCTC 934
Query 959 TAGAGGCTAAGTTTGAGAGGCTCACAATGAACGTGTTCTTACCAATCTCAATCACATTCA 1018
| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 935 TGGAGGCTAAGTTTGAGAGGCTCACGATGAATGTGTTCTTACCAATCTCAGTCACATTCA 994
Query 1019 GCGCGATGAGATGTGATGGAGCAAGGATCCTTAGCCAGTTCAATGACATCTTCTTCAACA 1078
||||||||||||||||||||| ||||||||| | || |||| |||||||||||||||||
Sbjct 995 GCGCGATGAGATGTGATGGAGTAAGGATCCTCAATCATTTCACTGACATCTTCTTCAACA 1054
Query 1079 TCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTCGCATGCCTTGCACCTTGCTTGT 1138
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1055 TCTTCCTAACATTTCTTATACTTGTCATAAAACTGGTTGCATGCCTTGCACCTTGCTTGT 1114
Query 1139 ACTACAAGTTACCTCTCAGTGAATCCTTGGCT 1170
|||||||||||||||| || |||||| |||||
Sbjct 1115 ACTACAAGTTACCTCTTAGCGAATCCATGGCT 1146
Score = 538 bits (291), Expect = 7e-152
Identities = 357/387 (92%), Gaps = 11/387 (3%)
Strand=Plus/Plus
Query 1962 ATTGGTGAAGAGGATGAAAAATAACCCGAGGATCCGTGTAACCGTGATCCGACTCGTCTT 2021
||||| ||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1741 ATTGG-GAAAAGGATGAAACATAACCCGAGGGTCCGTGTAACCGTGATCCGACTCGTCTT 1799
Query 2022 CGACCATGA-AATAGAGTCAGATTGGGATTATATTCTT-GATAACGAAGGCTTAAAGGAT 2079
||||||| | |||||||||||| |||||||||||| || ||||| |||||||||||||||
Sbjct 1800 CGACCAT-ATAATAGAGTCAGAGTGGGATTATATT-TTGGATAATGAAGGCTTAAAGGAT 1857
Query 2080 TTGAAGAGTACTGAAGACAACAAAGATATTGA-TTATATAGAGAGGATTGTGACTAGTAG 2138
||||||||||| |||||||||||||||||| | |||||||||||| |||||||| ||| |
Sbjct 1858 TTGAAGAGTACAGAAGACAACAAAGATATT-ATTTATATAGAGAGAATTGTGACCAGTGG 1916
Query 2139 TGTTGAGGTAGTCAAAGCTGTCCAATTGCTTGCAGAAGAGTACGATCTAATGGTGGTCGG 2198
|||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1917 TGTTGAGGTAGTCACCGCTGTCCAATTGCTCGCCGAAGAGTACGATCTTATGGTGGTCGG 1976
Query 2199 GAGAGATCATGATATGACATCACAAGACTT-ATCAGGACTAATGGAATGGGTCGAACTAC 2257
||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||| |
Sbjct 1977 GAGAGATCATGATATGACATCACAAAACTTGA-CAGGACTAATGGAGTGGGTCGAACTTC 2035
Query 2258 CAGAGTTAGGTGTCATCGGGGATTTGCTGGCGGCTAGAGATCT-AAGCTCTAAGGTTTCG 2316
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||
Sbjct 2036 CAGAGTTAGGTGTCATTGGGGATTTGCTGGCGGCTAGAGATCTCAA-CTCTAAGGTCTCG 2094
Query 2317 GTTTTAGTAGTTCAACAACAACAACAA 2343
|||||||||||||||||||||||||||
Sbjct 2095 GTTTTAGTAGTTCAACAACAACAACAA 2121
Score = 492 bits (266), Expect = 6e-138
Identities = 359/405 (89%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 1516 CTCGTTGGTCAGATAAACCCTATCATAGTCTCACACGACAAGAAATTGAAACGGCTTAAC 1575
|||||||||||||| ||||| |||||||||||| || |||||| |||||||||||||||
Sbjct 1342 CTCGTTGGTCAGATCAACCCCATCATAGTCTCAAACAACAAGATGTTGAAACGGCTTAAC 1401
Query 1576 AAAGACTCATACATCCATACCGCAAACCTTGCCTTTAGACAATTCGTGTTAGAAAGCTTA 1635
||| |||| |||||||||||||||||||||||||||| ||| ||| || |||||||||||
Sbjct 1402 AAAAACTCGTACATCCATACCGCAAACCTTGCCTTTAAACAGTTCATGCTAGAAAGCTTA 1461
Query 1636 GAGTCTGTAACCGTGACAACGTTCACTGCGTTCTCGCATGAAAACTTGATGCACGAAGAC 1695
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1462 GACTCTGTAACCGTGACAACGTTCACCGCGTTCTCGCATGAGAACTTGATGCATGAAGAC 1521
Query 1696 ATTTGTACACTTGCACTTGACAAAACAACATCGATGATTGTCGTCCCATCGGGGAGGAAA 1755
||||| ||||||||||||||| | || ||||||||||| ||||||||||||||||||
Sbjct 1522 ATTTGCACACTTGCACTTGACGGGATGACTTCGATGATTGTAGTCCCATCGGGGAGGAAA 1581
Query 1756 TGGACTGTAGATGGGTTATTCGAGTCTGACAACACTGCTATAAGACATCTAAACCAGTCG 1815
||||| ||||||| | || ||||||||| ||| ||| || |||||||||||||||||
Sbjct 1582 TGGACCACAGATGGGATGTTTGAGTCTGACGACAATGCCATTAGACATCTAAACCAGTCA 1641
Query 1816 TTACTCGATCGTGCGCCTTGTTCTATCGGCATACTAGTAGACCGTGGACAATTCTCGC-G 1874
||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 1642 TTACTAGATCGTGCGCCTTGTTCTATAGGCATATTAGTAGACCGTGGACAATTCTCGCAG 1701
Query 1875 AAAAAGTATTGTAACGAGCaaaaaaaGGTACATCATTGATGTTGG 1919
|||| ||| ||||| ||||||| |||||||| ||||||| ||||
Sbjct 1702 AAAA-GTAATGTAATAAGCAAAAGAAGGTACAACATTGATATTGG 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5