BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44940.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484892 jgi|Araly1|484892|fgenesh2_kg.5__884__AT3G44940.1 1587 0.0
> Ahg484892 jgi|Araly1|484892|fgenesh2_kg.5__884__AT3G44940.1
Length=1219
Score = 1587 bits (859), Expect = 0.0
Identities = 1094/1198 (91%), Gaps = 53/1198 (4%)
Strand=Plus/Plus
Query 130 ATCATGGACCAAAGCAATTCTCTTCTTAGCTGGACTTACTTCTCTCATGGAAAGACAACG 189
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 71 ATCATGGACCAAAGCAATGCTCTTCTTAGCTGGACTTACTTCTCTCATGGAAAGACAACG 130
Query 190 GAAGAGCTAAGACAGACTCTCGTGTACACAACAATGGAGTTAGAACAAACAAAGCTTGTG 249
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 131 GAAGAGCTAAGACAGACTCTTGTGTACACAACAATGGAGCTAGAACAAACAAAGCTGGTG 190
Query 250 GCTCACGAGGAGCTAAGGAAGAGAGATGAACAACTGATCCACCTAGAAGATGTTTTAACC 309
||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 191 GCTCAAGAGGAACTAAGGAAGAGAGATGAACAATTGATCCATCTAGAAGATGTTTTAACC 250
Query 310 AAAACCCTCAAAGAAAGAGACGAAGCTCTAGAGAAATATAATCATCTCCTCTTAAATAAT 369
||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| | |
Sbjct 251 AAAACCCTCAAAGAAAGAGACGAAGCTCTAGAGAAATGTCATCATCTCCTCCTAAACAGT 310
Query 370 CTCTTACTTCAACAGAAGCAGCAACAGAATCAGAATCAGAAACAAGAACTTGTCACTCCT 429
||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct 311 CTCTTACTTCAACAGAAACAGCAACAGAATCAGAA--A----CAAGAACTTATCACTCCT 364
Query 430 CCTTTATCAGGAGCTTCAAGTATTATTGAAGACGAGCAAGTTCAGCCACAGCAGCCGCAG 489
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 365 CCTTTATCAGGAGCTTCAAGCATTATTGAAGACGAGCAAGTACAGCCACAGCAGCCGCAG 424
Query 490 CTTAACTCAAACAAGAGCTTTTCGTCTTCAGACACTGAAGAAAGCATCATGTCACCATCA 549
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 425 CTTAACTCAAACAAGAGCTTTTCATCTTCAGACACCGAAGAAAGCATCATGTCACCATCA 484
Query 550 GTGATTGATCCAGTGACGATGAACCAACAGATTGAAGTCTCAGGAGATGAGATGTTGGCT 609
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 485 GTGATTGATCCGGTGACGATGAACCAACAGATTGAAGTCTCAGGAGATGAGTTGATGGCT 544
Query 610 ACATTGTTGCCTGACAAA-CCACTGCCTGAAAAGGGAAAACTCTTACAAGCTGTTATCAA 668
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 545 ACATTGTTGCCTGA-AAAGCCACTGCCTGAAAAGGGAAAACTCTTACAAGCTGTTATCAA 603
Query 669 GGCAGGTCCTTTGCTTCAGACACTTCTCTTAGCTGGTCCTCTGCCTCAATGGCGCCACCC 728
|||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 604 GGCAGGTCCTTTGCTTCAAACACTTCTCGTAGCCGGTCCTCTGCCTCAATGGCGCCACCC 663
Query 729 ACCGCCTCCACTTGAGACCTCTGAGATCCCTCCTGTCACCATTCCACTACCTCAGTTTCA 788
|||||||||||| |||||||| ||||| |||||||||||||| |||| || ||||||||
Sbjct 664 ACCGCCTCCACTCGAGACCTCCGAGATTCCTCCTGTCACCATCCCACCACTTCAGTTTCT 723
Query 789 GAACAATGGCTGTGGGAACTCCAACAAGAAAAGGGCATTCTCAATCTCAGATGAAACTTA 848
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 724 GAACAATGGTTGTGGGAACTCCAACAAGAAAAGGGCATTCTCAATCACAGATGAAACTTA 783
Query 849 TTCAGAGACTAAGTATCAGAAAGTTCTTCTCCATTAACCGGCTACTGATCTTTTTATCCT 908
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 784 TTCAGAGACTAAGTATCAGAAACTTCTTCTCCATTAACCTGCTACTGATCTTTG-ATCCT 842
Query 909 TACTCAACAAAATACTAATATATAGTCTTTCTAATATACCAATATACAGATCACTTTTCA 968
||||||||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 843 TACTCAACAAAATACTAATATATAGTCTTTC-------C-AATATAC----CA-TTTTCA 889
Query 969 GTATTAATCTCACTTAGGGTACTAGTGAGAGTGATCTTTTTAGTCAGTTTGT-TGTAGAT 1027
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 890 GTATTAATCTCACTTAGGGTACTAGTGAGAGTGATCTTTTTAGTCAGTTT-TCTGTAGAT 948
Query 1028 AGAGCTTGATTTGAATTTGTGGAGAGTGAATCTGATCCATTTAGGGTTTAGATCTAGAGA 1087
|||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 AGAGCTTGATTTAAAGTTGTGGAGAGTGAATCTGATCCATTTAGGGTTTAGATTTAGAGA 1008
Query 1088 GTGATGGGAATGAAACTCCCC-TGGTTTAACTCATACTCGAACATGAGTGttttttttAC 1146
||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||
Sbjct 1009 GTGATGGGAATGAAACTCCCCCTGGTTTAACTCATACTCAAACATGAGT-TTTTTT--AC 1065
Query 1147 CAAGTGAGAGAgttttgctatttgcttttcttttgttgtgcttattgatttcttgttttg 1206
|||||||||||||||| |||||| ||||||||||||| | || | | ||| |
Sbjct 1066 CAAGTGAGAGAGTTTTACTATTTACTTTTCTTTTGTT-T--TT-T-G-TTT-T------- 1111
Query 1207 tttCCTAAACCCAATTTTACATTCATGTTTTGGCTCCATGAATGTAAA-CTTATTGGGGT 1265
| |||||||||| | |||||||||||||||||||||||||||||| || |||| ||
Sbjct 1112 ---C-TAAACCCAATGTCACATTCATGTTTTGGCTCCATGAATGTAAAACTG-TTGGAGT 1166
Query 1266 GTTTTGTGttttttttCTTCCTTTGTAATCCAATTTCACCTTGGTGTAAAATACTAAA 1323
||||||| ||| |||| || | |||||||| |||||||||||||||||||| ||||
Sbjct 1167 GTTTTGTCTTTCTTTT-TT--T--GTAATCCATTTTCACCTTGGTGTAAAATAGTAAA 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5