BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44960.1 Length=624 Score E Sequences producing significant alignments: (Bits) Value Ahg897276 jgi|Araly1|897276|Al_scaffold_0005_1242 839 0.0 > Ahg897276 jgi|Araly1|897276|Al_scaffold_0005_1242 Length=639 Score = 839 bits (454), Expect = 0.0 Identities = 568/623 (91%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 1 ATGAGGCAGAGTCTCTCTGATATTACTAACTCTCAGTCTCAAGAAGAGCTTAATCTTCAC 60 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 1 ATGAGGCAGAGTCTCTCTGATATCACTAACTCTCAGTCTCAAGAAGAGTTTAATCTTTAC 60 Query 61 AAGATCGGTTCCGAGCCGAGTGGACATGTAAACCGGCTGATGAAGGTGAAAGCGTTGCAC 120 | ||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||| Sbjct 61 GGGGTCGGTTCGGAGCCGAGTGAACACGTAAACCGGCTAATGAAGGTGAAAGCTTTGCAC 120 Query 121 CATGAGGTTACTTGCAAAAATGCTTTGCTAAAGGCTAAATGTTGTG-ACAAAGAGAAAGG 179 ||||||||||||||||||||||||||||| ||| ||||||||| || || |||||||||| Sbjct 121 CATGAGGTTACTTGCAAAAATGCTTTGCTTAAGTCTAAATGTTTTGAAC-AAGAGAAAGG 179 Query 180 TGAAAACACTAAACCAAGAAATGCACTAACAACTGAGAGTGTGCTAAATATAACGGACGA 239 |||||| || |||||||||||||| ||||||||||||| ||||||||| |||| |||||| Sbjct 180 TGAAAAGACAAAACCAAGAAATGCCCTAACAACTGAGAATGTGCTAAAGATAAAGGACGA 239 Query 240 AGACTCACCGTCACCGAAACCTTTTGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 AGACTCACCGTCACCGAAACCTTATGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299 Query 300 CTTAGGAGCATCTACTACAAACAAGAATGAGGCAGAAAAAGTGAAATCGGAAACCAAAAG 359 |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| Sbjct 300 CTTAGGAGCATCTACTGCAAACAAGAATGAGGCAGAAAAAGAGAAATCTGAAACCAAAAG 359 Query 360 GAGGCACTTAAGAAGGAGATC-GCCGAGAGTGAGATCAGCAGCGCAAGAAGTGACAGAGA 418 |||||| |||||||||||||| || ||||||| | ||||||| |||||||| ||||||| Sbjct 360 GAGGCATTTAAGAAGGAGATCAGC-GAGAGTGCGGTCAGCAGATCAAGAAGTTACAGAGA 418 Query 419 ATCTGTTTGAGATTGAAGATCTCCAGCTTACAATGCCTAATGACATGTCTCAACAAGATA 478 ||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 419 ATCTGTTTGAGATCGAAGATCTCCAGCTTACAATGCCTAATAACATATGTCAACAAGATA 478 Query 479 ACTTGACAATGGAATCACATACCCGAAAGAAAGAAGAGGGGAAAG-AAGGTTTACGGACA 537 ||| |||||||| |||||||||||||||||| |||| || |||| ||| |||||| ||| Sbjct 479 ACTCGACAATGGCATCACATACCCGAAAGAAGGAAGCGGA-AAAGGAAGATTTACGAACA 537 Query 538 AGACATCATG-ATTTTGAGATCTATCGATCACCAGTCGATCGATCATTGCGTAGAGAAGC 596 ||||||| || | | | || ||||||||||||||||||||| |||||||||||||||||| Sbjct 538 AGACATC-TGGACTGTAAGGTCTATCGATCACCAGTCGATCAATCATTGCGTAGAGAAGC 596 Query 597 TGAGAGGATACACTCTTACAAGG 619 |||||||||||| |||||||||| Sbjct 597 TGAGAGGATACATTCTTACAAGG 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22835627283 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5