BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44960.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897276 jgi|Araly1|897276|Al_scaffold_0005_1242 839 0.0
> Ahg897276 jgi|Araly1|897276|Al_scaffold_0005_1242
Length=639
Score = 839 bits (454), Expect = 0.0
Identities = 568/623 (91%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 1 ATGAGGCAGAGTCTCTCTGATATTACTAACTCTCAGTCTCAAGAAGAGCTTAATCTTCAC 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 1 ATGAGGCAGAGTCTCTCTGATATCACTAACTCTCAGTCTCAAGAAGAGTTTAATCTTTAC 60
Query 61 AAGATCGGTTCCGAGCCGAGTGGACATGTAAACCGGCTGATGAAGGTGAAAGCGTTGCAC 120
| ||||||| |||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 61 GGGGTCGGTTCGGAGCCGAGTGAACACGTAAACCGGCTAATGAAGGTGAAAGCTTTGCAC 120
Query 121 CATGAGGTTACTTGCAAAAATGCTTTGCTAAAGGCTAAATGTTGTG-ACAAAGAGAAAGG 179
||||||||||||||||||||||||||||| ||| ||||||||| || || ||||||||||
Sbjct 121 CATGAGGTTACTTGCAAAAATGCTTTGCTTAAGTCTAAATGTTTTGAAC-AAGAGAAAGG 179
Query 180 TGAAAACACTAAACCAAGAAATGCACTAACAACTGAGAGTGTGCTAAATATAACGGACGA 239
|||||| || |||||||||||||| ||||||||||||| ||||||||| |||| ||||||
Sbjct 180 TGAAAAGACAAAACCAAGAAATGCCCTAACAACTGAGAATGTGCTAAAGATAAAGGACGA 239
Query 240 AGACTCACCGTCACCGAAACCTTTTGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 AGACTCACCGTCACCGAAACCTTATGTACCAACCAGAAGGCGATTCATCAGAAGCAAATC 299
Query 300 CTTAGGAGCATCTACTACAAACAAGAATGAGGCAGAAAAAGTGAAATCGGAAACCAAAAG 359
|||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 300 CTTAGGAGCATCTACTGCAAACAAGAATGAGGCAGAAAAAGAGAAATCTGAAACCAAAAG 359
Query 360 GAGGCACTTAAGAAGGAGATC-GCCGAGAGTGAGATCAGCAGCGCAAGAAGTGACAGAGA 418
|||||| |||||||||||||| || ||||||| | ||||||| |||||||| |||||||
Sbjct 360 GAGGCATTTAAGAAGGAGATCAGC-GAGAGTGCGGTCAGCAGATCAAGAAGTTACAGAGA 418
Query 419 ATCTGTTTGAGATTGAAGATCTCCAGCTTACAATGCCTAATGACATGTCTCAACAAGATA 478
||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 419 ATCTGTTTGAGATCGAAGATCTCCAGCTTACAATGCCTAATAACATATGTCAACAAGATA 478
Query 479 ACTTGACAATGGAATCACATACCCGAAAGAAAGAAGAGGGGAAAG-AAGGTTTACGGACA 537
||| |||||||| |||||||||||||||||| |||| || |||| ||| |||||| |||
Sbjct 479 ACTCGACAATGGCATCACATACCCGAAAGAAGGAAGCGGA-AAAGGAAGATTTACGAACA 537
Query 538 AGACATCATG-ATTTTGAGATCTATCGATCACCAGTCGATCGATCATTGCGTAGAGAAGC 596
||||||| || | | | || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AGACATC-TGGACTGTAAGGTCTATCGATCACCAGTCGATCAATCATTGCGTAGAGAAGC 596
Query 597 TGAGAGGATACACTCTTACAAGG 619
|||||||||||| ||||||||||
Sbjct 597 TGAGAGGATACATTCTTACAAGG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5