BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44970.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968 359 4e-98
Ahg936727 jgi|Araly1|936727|scaffold_500918.1 294 1e-78
Ahg316750 jgi|Araly1|316750|fgenesh1_pm.C_scaffold_2001783 235 6e-61
Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001 233 2e-60
Ahg924121 jgi|Araly1|924121|scaffold_105402.1 198 8e-50
Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1 169 6e-41
Ahg924130 jgi|Araly1|924130|scaffold_105411.1 167 2e-40
Ahg952412 jgi|Araly1|952412|scaffold_69900001.1 159 4e-38
Ahg924128 jgi|Araly1|924128|scaffold_105409.1 147 3e-34
Ahg924124 jgi|Araly1|924124|scaffold_105405.1 145 1e-33
> Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968
Length=1434
Score = 359 bits (194), Expect = 4e-98
Identities = 367/450 (82%), Gaps = 14/450 (3%)
Strand=Plus/Plus
Query 907 GAAAACCCA-AAAGTTCTCGCAGAGTTAAAGAAAGAACATGAGGTGATCCTTGAAAGCAG 965
||||| ||| |||| |||||||||||| |||| ||| ||||||| |||||| ||| ||
Sbjct 907 GAAAA-CCATAAAGCTCTCGCAGAGTTGAAGAGAGAGCATGAGGCCATCCTTCAAAATAG 965
Query 966 AGAA-GACAAAGAAGGTGGAGTT-ACTTGGGAAGAATACAGACACAAGATGACTTTCACC 1023
| || || ||||||| ||||||| | |||||||||||||||||| | |||||||||||
Sbjct 966 A-AATGATAAAGAAGCTGGAGTTGGC-TGGGAAGAATACAGACACCACATGACTTTCACT 1023
Query 1024 AACATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAA 1083
|||||||| ||||||||| |||||||||| ||||| |||||||||| | | ||| ||
Sbjct 1024 AACATGGTGATCAATGAGACTCTTCGAATGGCAAACATGGCTCCTATAATGTATAGGAAG 1083
Query 1084 GCGGTAAAGGATGTGGAAATCAAAGGATACACCATTCCAGCAGGTTGGATAGTGATGATT 1143
|| || || ||||| ||||||||||||||||| |||||||| || ||||| ||| | ||
Sbjct 1084 GCTGTGAACGATGTCGAAATCAAAGGATACACAATTCCAGCGGGCTGGATTGTGGCGGTT 1143
Query 1144 ATACCTTCAGTGGTTCATTTTGATCCTGAAATCTATGAAAACCCTTTTGAGTTTAATCCA 1203
|||||| ||| || ||||| ||| ||| || ||||| || ||||| ||||| ||||||
Sbjct 1144 ATACCTCCAGCCGTCCATTTCAATCATGAGATTTATGAGAATCCTTTGGAGTTCAATCCA 1203
Query 1204 TGGAGATGGGAGGGGAAAGAGTTGCGGGCTGGATCTAAAACGTTCATGGTGTTTGGAACC 1263
||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1204 TGGAGATGGGAGGGGAAAGAGTTGCGGTCTGGATCTAAGACGTTCATGGTATTTGGAGGA 1263
Query 1264 GGACTTAGACAATGCGCTGGTGCA-G-AGTTTGCTAGGCTTCAGATTTCAGTAT-TTC-T 1319
||| | || ||||| | | | ||| | ||||||| || || || ||||| ||| ||| |
Sbjct 1264 GGAGTGAGGCAATGTG-TCG-GCACGGAGTTTGCGAGACTCCAAATTTC--TATCTTCAT 1319
Query 1320 TCATCATCTTGTTACCACTTATAATTTCTC 1349
|||||||||||| |||| ||| |||||||
Sbjct 1320 TCATCATCTTGTAACCAAATATGATTTCTC 1349
Score = 263 bits (142), Expect = 3e-69
Identities = 418/547 (76%), Gaps = 36/547 (7%)
Strand=Plus/Plus
Query 76 TGGTCAAACCCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCAT 134
||||| ||||| |||| | || ||||||||||||||||||||||||||||| ||||||||
Sbjct 76 TGGTCGAACCCGAAGTGC-AATGGCAAGTTACCTCCGGGATCAATGGGTTTACCGATCAT 134
Query 135 CGGAGAGACATT-AGATTTCTTTAAGCCTTATGGATTCTACGAGATCTC-CCCATATCTC 192
||||||||||| | | |||||| |||| ||||||| ||||||||||| ||| | | ||
Sbjct 135 CGGAGAGACATGCA-ACTTCTTTGAGCCCCATGGATTATACGAGATCTCACCCTT-TGTC 192
Query 193 AAGAAAAAGATGTTAAGGTATGGGCCATTATTTCGGACAAACATTCTT-GGAGTAAAA-A 250
||||| | |||||||| ||| |||||||| |||||||| |||||| || ||| | || |
Sbjct 193 AAGAAGAGGATGTTAAAGTACGGGCCATTGTTTCGGACCAACATT-TTCGGA-TCCAACA 250
Query 251 CCGTGGTATCGACGGATAAG-GATGTTAACATGGAGATTTTAAGACAAGAGAACAAGTCT 309
||||||| | ||| || | ||| | | | | ||| |||| |||||||||||||||||
Sbjct 251 CCGTGGTTTTGACAGA-ACCTGATATCATCTTTGAGGTTTTCCGACAAGAGAACAAGTCT 309
Query 310 TTCAT-TTTAAGTTATCCGGATGG-TTTAATGAAGCCATTGGGAAAAGATAGCTTGTTCT 367
|| | |||| | ||||| || | ||| | |||||||| |||||||| | | |||||
Sbjct 310 TTTGTGTTTA-GCTATCCAGAAGCCTTTG-TAAAGCCATTTGGAAAAGAAAACGTGTTCC 367
Query 368 TGAAG-ATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCATCTT-TTGTCCTC 425
| || || |||| ||||||||||||| |||||||| | | |||||| | | ||| | ||
Sbjct 368 TCAAACATGGGAA-CATCCACAAGCACGTCAAACAAGTCAGTCTTCAACATATTGGC-TC 425
Query 426 CGAGGGTTTAAAACGGAAAA--T-ATTAAAAGATATGGACCGTGTGACACGC-GAGCATC 481
|||| |||||| |||| | ||| | || || ||| | ||||| | |||||||
Sbjct 426 TGAGGCCTTAAAAA--AAAAGCTGATTGGA-GAAATAGACAGAGTGAC-CTATGAGCATC 481
Query 482 TTAGTTCGAAAG-CTAAAACAGGA-AGATTGGATGTTAAGGACG-CAGTTTCAAAA-TTG 537
||| || |||| ||| |||| || || ||| |||||| | ||||| ||| |||
Sbjct 482 TTAAATC-AAAGGCTAGC-CAGGGTAGCTTCAATGCTAAGGA-GACAGTTG-AAAGCTTG 537
Query 538 ATAATAGCCCACTTGACACCTAAGATGATGAGTAATCTCAAACCACAGACTCAAGCAAAG 597
||||| || ||| |||| || ||||| || ||||| ||||||||| | || ||| ||||
Sbjct 538 ATAATGGCACACCTGACCCCGAAGATAATAAGTAACCTCAAACCAGAAACACAAACAAAT 597
Query 598 CTTATGG 604
||| |||
Sbjct 598 CTTGTGG 604
> Ahg936727 jgi|Araly1|936727|scaffold_500918.1
Length=1465
Score = 294 bits (159), Expect = 1e-78
Identities = 449/587 (76%), Gaps = 28/587 (5%)
Strand=Plus/Plus
Query 64 TGGTGGTACCAATGGTCAAACCCTAAGTCTAACGGCAAGTTACCTCCGGGATCAATGGGT 123
|||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||
Sbjct 84 TGGTGGTACCGATGGTCAAACCCCCAGTGTAATGGCAAGTTACCTCCGGGATCAATGGGT 143
Query 124 TTCCCGATCATCGGAGAGACATTAGATTTCTTTAAGCCTTATGGATTC-TACGAGATCTC 182
|| |||||||| ||||||||| | || |||||||| ||| ||||| || | ||||||||
Sbjct 144 TTTCCGATCATTGGAGAGACAATCGACTTCTTTAAACCTCATGGACTCCT-CGAGATCTT 202
Query 183 -CCCATATCTCAAGAAAAAG-ATGTTAAGGTATGGGCCATTATTTCGGACAAACATTCTT 240
||| | | |||| |||||| |||||||||||||||||| | ||||| || |||||| ||
Sbjct 203 ACCCTT-TGTCAA-AAAAAGGATGTTAAGGTATGGGCCACTGTTTCGCACCAACATT-TT 259
Query 241 -GGAGTAAAAACCGTGGTATCGACGGATAAGGATGTTAAC-ATGGAGATTTTAAGACAAG 298
||| || || |||||| ||||||| ||||| | | | | ||||||| | ||||
Sbjct 260 CGGAACCAATACTGTGGTAGCGACGGACCCTGATGTGATCTACG-AGATTTTTCGGCAAG 318
Query 299 AGAACAAGTCTTTCAT-TTTAAGT-TATCCGGATGGTTTAATGAAGC-CATTGGGAAAAG 355
|||||||||||||| | |||| | | ||||||| ||| | ||| | |||| |||||
Sbjct 319 AGAACAAGTCTTTCGTGTTTA-GCCT-TCCGGATAATTTTCTCAAGATCTTTGG-AAAAG 375
Query 356 ATAG-CTTGTTCT-TGAAGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCA 413
||| || ||| |||| || || | | ||||||||| ||||||||| ||||| |
Sbjct 376 ATAATCT-GTTAAGTGAACATGGGGA-CGCCCACAAGCATGCCAAACAAATCACTCTAAA 433
Query 414 TCTT-TTGTCCTCCGAGGGTTTAAAACGGAAAAT-ATTAAAAGATATGGACCGTGTGACA 471
| || ||| | || ||||| || || | || || || | ||| |||||| |||||
Sbjct 434 TTTTCTTGGC-TCTGAGGGATTGAAGCACAACATGAT-AGGAGACATGGACAAAGTGACC 491
Query 472 CGCGAGCATCTTAGTTCGAAAG-CTAAAA-CAGGAAGATTGGATGTTAAGGACGCAGTTT 529
|||||| | ||||| || |||| ||| | ||| | || ||||||||||| || |||
Sbjct 492 CGCGAGGAACTTAGATC-AAAGGCTAGCCTCGGGA-GCTTCGATGTTAAGGAGGCCGTTA 549
Query 530 CAAAATTGATAATAGCCCACTTGACACCTAAGATGATGAGTAATCTCAAACCACAGACTC 589
||| ||||||||| | |||||||| || ||| |||| ||||| || | || ||||||
Sbjct 550 CAAGCTTGATAATAACTCACTTGACCCCCAAGTTGATAAGTAACCTTGGATCAGAGACTC 609
Query 590 AAGCAAAGCTTATGGGAATTTTTAAGGCCTTCACTTTTGATTGGTTT 636
||||||| ||||| | || ||| ||||| | || | |||||||||||
Sbjct 610 AAGCAAATCTTATAGAAAGTTTCAAGGCATGCAATCTTGATTGGTTT 656
> Ahg316750 jgi|Araly1|316750|fgenesh1_pm.C_scaffold_2001783
Length=1326
Score = 235 bits (127), Expect = 6e-61
Identities = 321/411 (78%), Gaps = 28/411 (7%)
Strand=Plus/Plus
Query 27 TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC 84
||| || |||| ||||||||||| ||| | | || |||| ||||| |||||| || ||
Sbjct 28 TTG-GTCATAGCTTTAGTGGTTGTGAGCATCAGCCACTGGTTGTACCGATGGTCGAACAC 86
Query 85 ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG 139
||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 87 TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG 145
Query 140 AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA 198
| ||| | ||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct 146 AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG 204
Query 199 AAGATG-TTAAGGTATGGGCCATTATTTCGGACAAACATTCTTGGAGTA-AAAACCGTGG 256
| ||| |||||||||||||| || ||||| || |||||| |||| | ||||| |||
Sbjct 205 A-GATTATTAAGGTATGGGCCGTTGTTTCGTACGAACATTTTTGGT-TCCAAAACTGTGT 262
Query 257 TATCGACGGATA--AGGATGTTAACATGGAGATTTTAAGACAAGAGAACAAGTCTTTCAT 314
| |||||||| | || |||||| | | |||||||| | ||||||||||||||||||
Sbjct 263 TTTCGACGGA-ACCAG-ATGTTATCTTCGAGATTTTCCGGCAAGAGAACAAGTCTTTCGC 320
Query 315 T-TTAAGTTATCCGGA--TGGTTTAATGAAGCCA-TTGGGAAAAGATAGCTTGTTCTTGA 370
|| | ||||| || || ||| | ||| | |||| |||||||| |||||||| |
Sbjct 321 GCTTG-GCTATCCAGACATG-TTTG-TCAAGGTACTTGG-AAAAGATAATTTGTTCTTCA 376
Query 371 AGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCATCTT-TTG 420
|| || |||| || |||||| ||||| |||| |||| |||||| |||
Sbjct 377 AGCCCGGGGACATACATAAGCACCTCAAAAAAATTACTCAACATCTTCTTG 427
> Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001
Length=1350
Score = 233 bits (126), Expect = 2e-60
Identities = 877/1219 (72%), Gaps = 133/1219 (11%)
Strand=Plus/Plus
Query 118 ATGGGTTTCCCGATCATCGGAGAGAC-ATTAGATTTCTTTAAGCCTTATGGATTCTACGA 176
|||||||| || ||||| |||||||| ||| |||||||| ||||||| ||||||| ||||
Sbjct 80 ATGGGTTT-CCAATCATTGGAGAGACTATT-GATTTCTTAAAGCCTTGTGGATTCAACGA 137
Query 177 GATCTCC--CCATATCTCAAGAAAAAGATGTTAAGGTATGGGCCATTATTTCGGACAAAC 234
||| || || | | | ||||| | |||| |||||||||| | || ||||||||||||
Sbjct 138 TATC-CCAACC-TTTGTAAAGAAGAGGATGATAAGGTATGGACTGTTGTTTCGGACAAAC 195
Query 235 ATTCTT-GGAGT-AAAAACCGTGGTATCGACGGAT-AAGGATGTTAA-CATGGAGATTTT 290
||| || || | ||||||||||| ||| ||||| | |||| ||| || |||||||
Sbjct 196 ATT-TTCGG-TTCCAAAACCGTGGTTTCGGCGGATCCA-GATG-TAATCAACCAGATTTT 251
Query 291 AAGACAAGAGAACAAGTCTTTCATTTTAAGTTATCCGG--ATGGTTTAATG-AAGCCATT 347
| |||||||||| |||||| || | ||||||| || || || ||| |||
Sbjct 252 CCGGCAAGAGAACACGTCTTTTGGGCTAGGCTATCCGGACAT-ACTT-GTGAAAG-TATT 308
Query 348 GGGAAAAGATAGCTTGTTCTTGAA-G-ATTGGAAACATCCACAAGCACATCAAACAAA-T 404
|||||||||| ||||||||||| | | | | |||||||||| || || ||||| |
Sbjct 309 TGGAAAAGATAATTTGTTCTTGAAGGAAGT-G-TTCATCCACAAGTACCTC-CACAAAGT 365
Query 405 AACTCTTCATCTT-TTGTCCTCCGAGGGTTTAAAACGGAA-AAT-ATTA-AAAGATATGG 460
||| | || || ||| |||||||||||| || | || ||| | || || | ||||
Sbjct 366 CACTATGCAAATTATTG-GCTCCGAGGGTTTGAAGC-AAACAATGA-TAGGAA-ACATGG 421
Query 461 ACCGTG-TGACACGCGAGCATCTTAG-TTCGAAAGCTAAAACA-GGAAGATTGGATGTTA 517
|| | | || ||||| ||| |||| || ||| ||| | || || || || |||||
Sbjct 422 ACAAAGCT-ACCCGCGACCATTTTAGATT-GAAGGCT-AGCCAGGGGAGCTTCAATGTT- 477
Query 518 AG-GACGCAGTTTCAAAA-TTGATAATAGCCCACTTGACACCTAAGATGATGAGTAATCT 575
| | | || || |||| ||||| | || || ||||||| ||| |||| ||||| ||
Sbjct 478 CGTAAAGAAG-TTGAAAACTTGATTGTGGCGTACATGACACCAAAGCTGATAAGTAACCT 536
Query 576 CAAACCACAGACTCAAGCAAAGCTTATGGGA-ATTTTTAAGGCCTTCACTTTTGATTGGT 634
|||||| |||| ||| |||||||||| || | | | || ||||||| | |||||||||
Sbjct 537 TAAACCAGAGACGCAATCAAAGCTTAT-AGATAATCTCAACGCCTTCAATCTTGATTGGT 595
Query 635 TTCGGACATCCTATCTTATCTCTGCCGGGAAGGGTCTCTA-CAACA-CCCTTTGGGCATG 692
||| | | | || | | ||||| | |||| | |||| | ||| | ||| | || |
Sbjct 596 TTCAGTCCTTCTTTAGTCTCTCTTCTTGGAAAGCTCTC-ATCAA-AGTCCTCAAGTCACG 653
Query 693 CCGAGAGGGGATGCGA-GAGAT-AAAGGATATATATACA--ATGAGGAA-A-ACGTC-TG 745
| |||| | ||| | | | ||| ||| || | | | || |||| ||| | | ||| |
Sbjct 654 CGGAGAAGCGATTC-AGGTGATGAAA-GACGT-TCT-CAGTATGA-GAAGAGA-GTCACG 707
Query 746 AGGAGAAGTACGATGACTTCCTCAACACG--GCAATAGAAG-AGTCAGAGAAAG-CAGGA 801
| |||||| | || ||||| ||||||||| || |||||| | | || |||| || |
Sbjct 708 A-GAGAAGCAAGAAGACTTACTCAACACGTTGC--TAGAAGAACT-GGACAAAGAAAGTA 763
Query 802 G-AGTTATT-GAACGAA-AATGCAATTATAACCCTCATCTTTACCCTT-T--CATGT-GT 854
| | || || | || || || | || || ||||||| || |||| | ||| | ||
Sbjct 764 GCA-TT-TTCG-ACCAAGGAT-CCGCTACAAACCTCATC-TT--CCTTCTGGCAT-TCGT 815
Query 855 CACTCA-AGATA-CCACCTCAAAGGCGAT-TTGC-TTGGCTGTGAAATTCCTATTGGAAA 910
| | | ||| | ||||| || | | ||| ||||| ||||||||| || | |||
Sbjct 816 CGC-GAGAGA-AGGTACCTC-CAGTTG-TACTGCTTTGGCCGTGAAATTCATA-TCCAAA 870
Query 911 -ACCCAAAAGTTCTCGCAGAGTTAAAGAAAGAACATGAGGTGATCCTTGA-AAGCAGAGA 968
|||| ||||| || |||||| | ||| || ||| ||| || | || || |||| |
Sbjct 871 GACCCGAAAGTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAA-CAGAAA 929
Query 969 AGACAAAG-AAGGTGGAGTTA-CTTGGGAAGAATACAGACACAAGATGACTTTCACCAAC 1026
||| ||| ||| |||||||| | ||||||||||||| |||||| ||||||||||| |||
Sbjct 930 AGA-TAAGAAAGCTGGAGTTAGC-TGGGAAGAATACACACACAACATGACTTTCACAAAC 987
Query 1027 ATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAAGCG 1086
||||||||||||||||| ||||| | ||||| | | ||| | || ||| |||| ||
Sbjct 988 ATGGTTATCAATGAGTCGCTTCGCCTGTCAAACACGACCCCTTTATTGTTTCGAAAGGCA 1047
Query 1087 GTAAAGGATGTGGAAATCAAAGG--A-TAC-AC-------------C-ATTCCAGCAGGT 1128
| | ||||| || |||||||| | ||| || | ||||| || |||
Sbjct 1048 CTGCACGATGTTGAGATCAAAGGCAAGTACTACTTGGAAAGATATACAATTCCGGCTGGT 1107
Query 1129 TGGATAGT-G-ATGATTATACCTTCAGTGGTTCATTTTGATCCTGA-AATCTATGAAAAC 1185
||||| || | | | || |||||||| |||||||| ||||||| | || |||||| |||
Sbjct 1108 TGGATTGTGGCA-G-TTGCACCTTCAGCGGTTCATTATGATCCT-ACAAACTATGAGAAC 1164
Query 1186 CCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAGTTG-C--GGGCTGGATCTAAA 1242
|| ||||||||||||||||||||||||||||||||||| || | ||| || ||||||
Sbjct 1165 CCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGACTCGGG--GG-TCTAAA 1221
Query 1243 ACGTTCATGGTGTTTGGAA 1261
|||||||||| ||||||||
Sbjct 1222 ACGTTCATGGCGTTTGGAA 1240
> Ahg924121 jgi|Araly1|924121|scaffold_105402.1
Length=499
Score = 198 bits (107), Expect = 8e-50
Identities = 280/362 (77%), Gaps = 18/362 (5%)
Strand=Plus/Plus
Query 989 CTTGGGAAGAATACAGA-CACAAGATGACTTTCACCAACATGGTTATCAATGAGTCTCTT 1047
||||| ||||||| ||| | || ||||| |||||| | |||||||||||||||||||||
Sbjct 1 CTTGGAAAGAATATAGATC-CATGATGAAATTCACCCATATGGTTATCAATGAGTCTCTT 59
Query 1048 CGAATAACAAACTTGGCTCCTATG-T-TATTTAGAAAAGCGGTAAAG-GATGTGGAAATC 1104
| || | ||| | || || | | |||||||| | ||| || |||||||| |||
Sbjct 60 TGTTTAGGGAGTTTGTCACC--TGCTATGTTTAGAAAGGTGGT-GAGTGATGTGGAGATC 116
Query 1105 AAAGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTT 1163
||||| || || ||||||||||| ||||| || | || || | || || | ||||||
Sbjct 117 AAAGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTA 175
Query 1164 TGATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAG 1222
||| ||| ||||||||||| || || | |||||||||||||||||||||||||||||| |
Sbjct 176 TGACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGG 234
Query 1223 AGTTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGC 1280
| |||| | ||| |||||||||||||||| |||||| || | |||| ||| ||
Sbjct 235 AATTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGC 292
Query 1281 TGGTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTT 1339
|| |||||||||||||||||| ||| | | |||||||||||||||| || || || |
Sbjct 293 AGGAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGT 351
Query 1340 AT 1341
||
Sbjct 352 AT 353
> Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1
Length=1579
Score = 169 bits (91), Expect = 6e-41
Identities = 224/286 (78%), Gaps = 18/286 (6%)
Strand=Plus/Plus
Query 1030 GTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAAGCGGTA 1089
|||||||||||||| ||||| | ||||| | | ||| | || ||| |||| || |
Sbjct 1131 GTTATCAATGAGTCGCTTCGCCTGTCAAACACGACCCCTTTATTGTTTCGAAAGGCACTG 1190
Query 1090 AAGGATGTGGAAATCAAA-G---GATACACCATTCCAGCAGGTTGGATAGT-G-ATGATT 1143
| ||||| || |||||| | |||| || ||||| || |||||||| || | | | ||
Sbjct 1191 CACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGTTGGATTGTGGCA-G-TT 1248
Query 1144 ATACCTTCAGTGGTTCATTTTGATCCTGA-AATCTATGAAAACCCTTTTGAGTTTAATCC 1202
|||||||| |||||||| ||||||| | || |||||| ||||| ||||||||||||||
Sbjct 1249 GCACCTTCAGCGGTTCATTATGATCCT-ATAAACTATGAGAACCCATTTGAGTTTAATCC 1307
Query 1203 ATGGAGATGGGAGGGGAAAGAGTTG-C--GGGCTGGATCTAAAACGTTCATGGTGTTTGG 1259
||||||||||||||||||||| || | ||| || |||||||||||||||| ||||||
Sbjct 1308 ATGGAGATGGGAGGGGAAAGAAATGACTCGGG--GG-TCTAAAACGTTCATGGCGTTTGG 1364
Query 1260 AACCGGACTTAGACAATGCGCT-GGTGCAGAGTTTGCTAGGCTTCA 1304
|| ||| |||||| || | | |||||||||||||| |||||||
Sbjct 1365 AAGTGGAGTTAGACTTTGTG-TAGGTGCAGAGTTTGCGCGGCTTCA 1409
> Ahg924130 jgi|Araly1|924130|scaffold_105411.1
Length=1543
Score = 167 bits (90), Expect = 2e-40
Identities = 361/485 (74%), Gaps = 45/485 (9%)
Strand=Plus/Plus
Query 890 CTGTGAAATTCCTA-TTGGAAAACCCAAAAGTTCTCGCAGAGTTAAAGAAAGAACATGAG 948
||||||||||| || | |||||||| ||||| || ||| | |||| ||| ||||||
Sbjct 925 CTGTGAAATTCATAGCT-GAAAACCCCAAAGTGCTTATGGAGCTGAAGAGAGAGCATGAG 983
Query 949 GTGATCCTTGA-AAGCAGAGAAGACAAAGAAG-GTGGAGTTACTTGGGAAGAATACAGA- 1005
||||| | || ||||| || |||| || ||||||||||||| ||||||| |||
Sbjct 984 ACCATCCTCCATAA-CAGAGCTGATAAAG-AGTCTGGAGTTACTTGGAAAGAATATAGAT 1041
Query 1006 CACAAGATGACTTTCACCAACATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCT 1065
| || ||||||||||||| | ||||||||||||||||||||||| || || ||| |
Sbjct 1042 C-CATGATGACTTTCACCCATATGGTTATCAATGAGTCTCTTCGTTTAGGAAGTTTGTCA 1100
Query 1066 CCTATG-T-TATTTAGAAAAGCGGTAAAG-GATGTGGAAATCAAAGG--A---T-A---- 1112
|| || | | |||||||| | ||| || |||||||| |||||||| | | |
Sbjct 1101 CC--TGCTATGTTTAGAAAGGTGGT-GAGTGATGTGGAGATCAAAGGCAAGTTTGAGTCT 1157
Query 1113 --C---------ACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCA 1160
| || ||||||||||| ||||| || | || || | || || | ||||
Sbjct 1158 CTCTTTTGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCA 1216
Query 1161 TTTTGATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGA 1219
|| ||| ||| ||||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 1217 TTATGACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGA 1275
Query 1220 AAGAGTTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATG 1277
| || |||| | ||| |||||||||||||||| |||||| || | |||| |||
Sbjct 1276 AGGAATTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATG 1333
Query 1278 CGCTGGTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCA 1336
|| || |||||||||||||||||| ||| | | |||||||||||||||| || || |
Sbjct 1334 TGCAGGAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAA 1392
Query 1337 CTTAT 1341
| |||
Sbjct 1393 CGTAT 1397
> Ahg952412 jgi|Araly1|952412|scaffold_69900001.1
Length=260
Score = 159 bits (86), Expect = 4e-38
Identities = 161/195 (83%), Gaps = 13/195 (7%)
Strand=Plus/Plus
Query 27 TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC 84
||| || |||| ||||||||||| |||| | | || |||| ||| | |||||| || ||
Sbjct 48 TTG-GTCATAGCTTTAGTGGTTGTGAGGATCAGCCACTGGTTGTATCGATGGTCGAACAC 106
Query 85 ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG 139
||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 107 TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG 165
Query 140 AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA 198
| ||| | ||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct 166 AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG 224
Query 199 AAGATG-TTAAGGTA 212
| ||| ||||||||
Sbjct 225 A-GATTATTAAGGTA 238
> Ahg924128 jgi|Araly1|924128|scaffold_105409.1
Length=472
Score = 147 bits (79), Expect = 3e-34
Identities = 188/240 (78%), Gaps = 10/240 (4%)
Strand=Plus/Plus
Query 1107 AGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTG 1165
||| || || ||||||||||| ||||| || | || || | || || | |||||| ||
Sbjct 92 AGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATG 150
Query 1166 ATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAG 1224
| ||| ||||||||||| || || | |||||||||||||||||||||||||||||| ||
Sbjct 151 ACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAA 209
Query 1225 TTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTG 1282
|||| | ||| |||||||||||||||| |||||| || | |||| ||| || |
Sbjct 210 TTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAG 267
Query 1283 GTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341
| |||||||||||||||||| ||| | | |||||||||||||||| || || || |||
Sbjct 268 GAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 326
> Ahg924124 jgi|Araly1|924124|scaffold_105405.1
Length=520
Score = 145 bits (78), Expect = 1e-33
Identities = 181/230 (79%), Gaps = 10/230 (4%)
Strand=Plus/Plus
Query 1117 ATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTGATCCTGAAAT 1175
||||||||||| ||||| || | || || | || || | |||||| ||| ||| ||||
Sbjct 150 ATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATGACCCTCAAAT 208
Query 1176 CTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAGTTGCGG-GCT 1233
||||||| || || | |||||||||||||||||||||||||||||| || |||| | |
Sbjct 209 CTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTG-T 266
Query 1234 GGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTGGTGCAGAGTT 1292
|| |||||||||||||||| |||||| || | |||| ||| || || ||||||||
Sbjct 267 GGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAGGAGCAGAGTT 325
Query 1293 TGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341
|||||||||| ||| | | |||||||||||||||| || || || |||
Sbjct 326 TGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5