BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44970.1 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968 359 4e-98 Ahg936727 jgi|Araly1|936727|scaffold_500918.1 294 1e-78 Ahg316750 jgi|Araly1|316750|fgenesh1_pm.C_scaffold_2001783 235 6e-61 Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001 233 2e-60 Ahg924121 jgi|Araly1|924121|scaffold_105402.1 198 8e-50 Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1 169 6e-41 Ahg924130 jgi|Araly1|924130|scaffold_105411.1 167 2e-40 Ahg952412 jgi|Araly1|952412|scaffold_69900001.1 159 4e-38 Ahg924128 jgi|Araly1|924128|scaffold_105409.1 147 3e-34 Ahg924124 jgi|Araly1|924124|scaffold_105405.1 145 1e-33 > Ahg916217 jgi|Araly1|916217|Al_scaffold_0008_968 Length=1434 Score = 359 bits (194), Expect = 4e-98 Identities = 367/450 (82%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 907 GAAAACCCA-AAAGTTCTCGCAGAGTTAAAGAAAGAACATGAGGTGATCCTTGAAAGCAG 965 ||||| ||| |||| |||||||||||| |||| ||| ||||||| |||||| ||| || Sbjct 907 GAAAA-CCATAAAGCTCTCGCAGAGTTGAAGAGAGAGCATGAGGCCATCCTTCAAAATAG 965 Query 966 AGAA-GACAAAGAAGGTGGAGTT-ACTTGGGAAGAATACAGACACAAGATGACTTTCACC 1023 | || || ||||||| ||||||| | |||||||||||||||||| | ||||||||||| Sbjct 966 A-AATGATAAAGAAGCTGGAGTTGGC-TGGGAAGAATACAGACACCACATGACTTTCACT 1023 Query 1024 AACATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAA 1083 |||||||| ||||||||| |||||||||| ||||| |||||||||| | | ||| || Sbjct 1024 AACATGGTGATCAATGAGACTCTTCGAATGGCAAACATGGCTCCTATAATGTATAGGAAG 1083 Query 1084 GCGGTAAAGGATGTGGAAATCAAAGGATACACCATTCCAGCAGGTTGGATAGTGATGATT 1143 || || || ||||| ||||||||||||||||| |||||||| || ||||| ||| | || Sbjct 1084 GCTGTGAACGATGTCGAAATCAAAGGATACACAATTCCAGCGGGCTGGATTGTGGCGGTT 1143 Query 1144 ATACCTTCAGTGGTTCATTTTGATCCTGAAATCTATGAAAACCCTTTTGAGTTTAATCCA 1203 |||||| ||| || ||||| ||| ||| || ||||| || ||||| ||||| |||||| Sbjct 1144 ATACCTCCAGCCGTCCATTTCAATCATGAGATTTATGAGAATCCTTTGGAGTTCAATCCA 1203 Query 1204 TGGAGATGGGAGGGGAAAGAGTTGCGGGCTGGATCTAAAACGTTCATGGTGTTTGGAACC 1263 ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| Sbjct 1204 TGGAGATGGGAGGGGAAAGAGTTGCGGTCTGGATCTAAGACGTTCATGGTATTTGGAGGA 1263 Query 1264 GGACTTAGACAATGCGCTGGTGCA-G-AGTTTGCTAGGCTTCAGATTTCAGTAT-TTC-T 1319 ||| | || ||||| | | | ||| | ||||||| || || || ||||| ||| ||| | Sbjct 1264 GGAGTGAGGCAATGTG-TCG-GCACGGAGTTTGCGAGACTCCAAATTTC--TATCTTCAT 1319 Query 1320 TCATCATCTTGTTACCACTTATAATTTCTC 1349 |||||||||||| |||| ||| ||||||| Sbjct 1320 TCATCATCTTGTAACCAAATATGATTTCTC 1349 Score = 263 bits (142), Expect = 3e-69 Identities = 418/547 (76%), Gaps = 36/547 (7%) Strand=Plus/Plus Query 76 TGGTCAAACCCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCAT 134 ||||| ||||| |||| | || ||||||||||||||||||||||||||||| |||||||| Sbjct 76 TGGTCGAACCCGAAGTGC-AATGGCAAGTTACCTCCGGGATCAATGGGTTTACCGATCAT 134 Query 135 CGGAGAGACATT-AGATTTCTTTAAGCCTTATGGATTCTACGAGATCTC-CCCATATCTC 192 ||||||||||| | | |||||| |||| ||||||| ||||||||||| ||| | | || Sbjct 135 CGGAGAGACATGCA-ACTTCTTTGAGCCCCATGGATTATACGAGATCTCACCCTT-TGTC 192 Query 193 AAGAAAAAGATGTTAAGGTATGGGCCATTATTTCGGACAAACATTCTT-GGAGTAAAA-A 250 ||||| | |||||||| ||| |||||||| |||||||| |||||| || ||| | || | Sbjct 193 AAGAAGAGGATGTTAAAGTACGGGCCATTGTTTCGGACCAACATT-TTCGGA-TCCAACA 250 Query 251 CCGTGGTATCGACGGATAAG-GATGTTAACATGGAGATTTTAAGACAAGAGAACAAGTCT 309 ||||||| | ||| || | ||| | | | | ||| |||| ||||||||||||||||| Sbjct 251 CCGTGGTTTTGACAGA-ACCTGATATCATCTTTGAGGTTTTCCGACAAGAGAACAAGTCT 309 Query 310 TTCAT-TTTAAGTTATCCGGATGG-TTTAATGAAGCCATTGGGAAAAGATAGCTTGTTCT 367 || | |||| | ||||| || | ||| | |||||||| |||||||| | | ||||| Sbjct 310 TTTGTGTTTA-GCTATCCAGAAGCCTTTG-TAAAGCCATTTGGAAAAGAAAACGTGTTCC 367 Query 368 TGAAG-ATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCATCTT-TTGTCCTC 425 | || || |||| ||||||||||||| |||||||| | | |||||| | | ||| | || Sbjct 368 TCAAACATGGGAA-CATCCACAAGCACGTCAAACAAGTCAGTCTTCAACATATTGGC-TC 425 Query 426 CGAGGGTTTAAAACGGAAAA--T-ATTAAAAGATATGGACCGTGTGACACGC-GAGCATC 481 |||| |||||| |||| | ||| | || || ||| | ||||| | ||||||| Sbjct 426 TGAGGCCTTAAAAA--AAAAGCTGATTGGA-GAAATAGACAGAGTGAC-CTATGAGCATC 481 Query 482 TTAGTTCGAAAG-CTAAAACAGGA-AGATTGGATGTTAAGGACG-CAGTTTCAAAA-TTG 537 ||| || |||| ||| |||| || || ||| |||||| | ||||| ||| ||| Sbjct 482 TTAAATC-AAAGGCTAGC-CAGGGTAGCTTCAATGCTAAGGA-GACAGTTG-AAAGCTTG 537 Query 538 ATAATAGCCCACTTGACACCTAAGATGATGAGTAATCTCAAACCACAGACTCAAGCAAAG 597 ||||| || ||| |||| || ||||| || ||||| ||||||||| | || ||| |||| Sbjct 538 ATAATGGCACACCTGACCCCGAAGATAATAAGTAACCTCAAACCAGAAACACAAACAAAT 597 Query 598 CTTATGG 604 ||| ||| Sbjct 598 CTTGTGG 604 > Ahg936727 jgi|Araly1|936727|scaffold_500918.1 Length=1465 Score = 294 bits (159), Expect = 1e-78 Identities = 449/587 (76%), Gaps = 28/587 (5%) Strand=Plus/Plus Query 64 TGGTGGTACCAATGGTCAAACCCTAAGTCTAACGGCAAGTTACCTCCGGGATCAATGGGT 123 |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| Sbjct 84 TGGTGGTACCGATGGTCAAACCCCCAGTGTAATGGCAAGTTACCTCCGGGATCAATGGGT 143 Query 124 TTCCCGATCATCGGAGAGACATTAGATTTCTTTAAGCCTTATGGATTC-TACGAGATCTC 182 || |||||||| ||||||||| | || |||||||| ||| ||||| || | |||||||| Sbjct 144 TTTCCGATCATTGGAGAGACAATCGACTTCTTTAAACCTCATGGACTCCT-CGAGATCTT 202 Query 183 -CCCATATCTCAAGAAAAAG-ATGTTAAGGTATGGGCCATTATTTCGGACAAACATTCTT 240 ||| | | |||| |||||| |||||||||||||||||| | ||||| || |||||| || Sbjct 203 ACCCTT-TGTCAA-AAAAAGGATGTTAAGGTATGGGCCACTGTTTCGCACCAACATT-TT 259 Query 241 -GGAGTAAAAACCGTGGTATCGACGGATAAGGATGTTAAC-ATGGAGATTTTAAGACAAG 298 ||| || || |||||| ||||||| ||||| | | | | ||||||| | |||| Sbjct 260 CGGAACCAATACTGTGGTAGCGACGGACCCTGATGTGATCTACG-AGATTTTTCGGCAAG 318 Query 299 AGAACAAGTCTTTCAT-TTTAAGT-TATCCGGATGGTTTAATGAAGC-CATTGGGAAAAG 355 |||||||||||||| | |||| | | ||||||| ||| | ||| | |||| ||||| Sbjct 319 AGAACAAGTCTTTCGTGTTTA-GCCT-TCCGGATAATTTTCTCAAGATCTTTGG-AAAAG 375 Query 356 ATAG-CTTGTTCT-TGAAGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCA 413 ||| || ||| |||| || || | | ||||||||| ||||||||| ||||| | Sbjct 376 ATAATCT-GTTAAGTGAACATGGGGA-CGCCCACAAGCATGCCAAACAAATCACTCTAAA 433 Query 414 TCTT-TTGTCCTCCGAGGGTTTAAAACGGAAAAT-ATTAAAAGATATGGACCGTGTGACA 471 | || ||| | || ||||| || || | || || || | ||| |||||| ||||| Sbjct 434 TTTTCTTGGC-TCTGAGGGATTGAAGCACAACATGAT-AGGAGACATGGACAAAGTGACC 491 Query 472 CGCGAGCATCTTAGTTCGAAAG-CTAAAA-CAGGAAGATTGGATGTTAAGGACGCAGTTT 529 |||||| | ||||| || |||| ||| | ||| | || ||||||||||| || ||| Sbjct 492 CGCGAGGAACTTAGATC-AAAGGCTAGCCTCGGGA-GCTTCGATGTTAAGGAGGCCGTTA 549 Query 530 CAAAATTGATAATAGCCCACTTGACACCTAAGATGATGAGTAATCTCAAACCACAGACTC 589 ||| ||||||||| | |||||||| || ||| |||| ||||| || | || |||||| Sbjct 550 CAAGCTTGATAATAACTCACTTGACCCCCAAGTTGATAAGTAACCTTGGATCAGAGACTC 609 Query 590 AAGCAAAGCTTATGGGAATTTTTAAGGCCTTCACTTTTGATTGGTTT 636 ||||||| ||||| | || ||| ||||| | || | ||||||||||| Sbjct 610 AAGCAAATCTTATAGAAAGTTTCAAGGCATGCAATCTTGATTGGTTT 656 > Ahg316750 jgi|Araly1|316750|fgenesh1_pm.C_scaffold_2001783 Length=1326 Score = 235 bits (127), Expect = 6e-61 Identities = 321/411 (78%), Gaps = 28/411 (7%) Strand=Plus/Plus Query 27 TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC 84 ||| || |||| ||||||||||| ||| | | || |||| ||||| |||||| || || Sbjct 28 TTG-GTCATAGCTTTAGTGGTTGTGAGCATCAGCCACTGGTTGTACCGATGGTCGAACAC 86 Query 85 ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG 139 ||||||| | | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 87 TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG 145 Query 140 AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA 198 | ||| | ||||||||||||||||||||||||||||||| ||| || | ||||||||| Sbjct 146 AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG 204 Query 199 AAGATG-TTAAGGTATGGGCCATTATTTCGGACAAACATTCTTGGAGTA-AAAACCGTGG 256 | ||| |||||||||||||| || ||||| || |||||| |||| | ||||| ||| Sbjct 205 A-GATTATTAAGGTATGGGCCGTTGTTTCGTACGAACATTTTTGGT-TCCAAAACTGTGT 262 Query 257 TATCGACGGATA--AGGATGTTAACATGGAGATTTTAAGACAAGAGAACAAGTCTTTCAT 314 | |||||||| | || |||||| | | |||||||| | |||||||||||||||||| Sbjct 263 TTTCGACGGA-ACCAG-ATGTTATCTTCGAGATTTTCCGGCAAGAGAACAAGTCTTTCGC 320 Query 315 T-TTAAGTTATCCGGA--TGGTTTAATGAAGCCA-TTGGGAAAAGATAGCTTGTTCTTGA 370 || | ||||| || || ||| | ||| | |||| |||||||| |||||||| | Sbjct 321 GCTTG-GCTATCCAGACATG-TTTG-TCAAGGTACTTGG-AAAAGATAATTTGTTCTTCA 376 Query 371 AGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCATCTT-TTG 420 || || |||| || |||||| ||||| |||| |||| |||||| ||| Sbjct 377 AGCCCGGGGACATACATAAGCACCTCAAAAAAATTACTCAACATCTTCTTG 427 > Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001 Length=1350 Score = 233 bits (126), Expect = 2e-60 Identities = 877/1219 (72%), Gaps = 133/1219 (11%) Strand=Plus/Plus Query 118 ATGGGTTTCCCGATCATCGGAGAGAC-ATTAGATTTCTTTAAGCCTTATGGATTCTACGA 176 |||||||| || ||||| |||||||| ||| |||||||| ||||||| ||||||| |||| Sbjct 80 ATGGGTTT-CCAATCATTGGAGAGACTATT-GATTTCTTAAAGCCTTGTGGATTCAACGA 137 Query 177 GATCTCC--CCATATCTCAAGAAAAAGATGTTAAGGTATGGGCCATTATTTCGGACAAAC 234 ||| || || | | | ||||| | |||| |||||||||| | || |||||||||||| Sbjct 138 TATC-CCAACC-TTTGTAAAGAAGAGGATGATAAGGTATGGACTGTTGTTTCGGACAAAC 195 Query 235 ATTCTT-GGAGT-AAAAACCGTGGTATCGACGGAT-AAGGATGTTAA-CATGGAGATTTT 290 ||| || || | ||||||||||| ||| ||||| | |||| ||| || ||||||| Sbjct 196 ATT-TTCGG-TTCCAAAACCGTGGTTTCGGCGGATCCA-GATG-TAATCAACCAGATTTT 251 Query 291 AAGACAAGAGAACAAGTCTTTCATTTTAAGTTATCCGG--ATGGTTTAATG-AAGCCATT 347 | |||||||||| |||||| || | ||||||| || || || ||| ||| Sbjct 252 CCGGCAAGAGAACACGTCTTTTGGGCTAGGCTATCCGGACAT-ACTT-GTGAAAG-TATT 308 Query 348 GGGAAAAGATAGCTTGTTCTTGAA-G-ATTGGAAACATCCACAAGCACATCAAACAAA-T 404 |||||||||| ||||||||||| | | | | |||||||||| || || ||||| | Sbjct 309 TGGAAAAGATAATTTGTTCTTGAAGGAAGT-G-TTCATCCACAAGTACCTC-CACAAAGT 365 Query 405 AACTCTTCATCTT-TTGTCCTCCGAGGGTTTAAAACGGAA-AAT-ATTA-AAAGATATGG 460 ||| | || || ||| |||||||||||| || | || ||| | || || | |||| Sbjct 366 CACTATGCAAATTATTG-GCTCCGAGGGTTTGAAGC-AAACAATGA-TAGGAA-ACATGG 421 Query 461 ACCGTG-TGACACGCGAGCATCTTAG-TTCGAAAGCTAAAACA-GGAAGATTGGATGTTA 517 || | | || ||||| ||| |||| || ||| ||| | || || || || ||||| Sbjct 422 ACAAAGCT-ACCCGCGACCATTTTAGATT-GAAGGCT-AGCCAGGGGAGCTTCAATGTT- 477 Query 518 AG-GACGCAGTTTCAAAA-TTGATAATAGCCCACTTGACACCTAAGATGATGAGTAATCT 575 | | | || || |||| ||||| | || || ||||||| ||| |||| ||||| || Sbjct 478 CGTAAAGAAG-TTGAAAACTTGATTGTGGCGTACATGACACCAAAGCTGATAAGTAACCT 536 Query 576 CAAACCACAGACTCAAGCAAAGCTTATGGGA-ATTTTTAAGGCCTTCACTTTTGATTGGT 634 |||||| |||| ||| |||||||||| || | | | || ||||||| | ||||||||| Sbjct 537 TAAACCAGAGACGCAATCAAAGCTTAT-AGATAATCTCAACGCCTTCAATCTTGATTGGT 595 Query 635 TTCGGACATCCTATCTTATCTCTGCCGGGAAGGGTCTCTA-CAACA-CCCTTTGGGCATG 692 ||| | | | || | | ||||| | |||| | |||| | ||| | ||| | || | Sbjct 596 TTCAGTCCTTCTTTAGTCTCTCTTCTTGGAAAGCTCTC-ATCAA-AGTCCTCAAGTCACG 653 Query 693 CCGAGAGGGGATGCGA-GAGAT-AAAGGATATATATACA--ATGAGGAA-A-ACGTC-TG 745 | |||| | ||| | | | ||| ||| || | | | || |||| ||| | | ||| | Sbjct 654 CGGAGAAGCGATTC-AGGTGATGAAA-GACGT-TCT-CAGTATGA-GAAGAGA-GTCACG 707 Query 746 AGGAGAAGTACGATGACTTCCTCAACACG--GCAATAGAAG-AGTCAGAGAAAG-CAGGA 801 | |||||| | || ||||| ||||||||| || |||||| | | || |||| || | Sbjct 708 A-GAGAAGCAAGAAGACTTACTCAACACGTTGC--TAGAAGAACT-GGACAAAGAAAGTA 763 Query 802 G-AGTTATT-GAACGAA-AATGCAATTATAACCCTCATCTTTACCCTT-T--CATGT-GT 854 | | || || | || || || | || || ||||||| || |||| | ||| | || Sbjct 764 GCA-TT-TTCG-ACCAAGGAT-CCGCTACAAACCTCATC-TT--CCTTCTGGCAT-TCGT 815 Query 855 CACTCA-AGATA-CCACCTCAAAGGCGAT-TTGC-TTGGCTGTGAAATTCCTATTGGAAA 910 | | | ||| | ||||| || | | ||| ||||| ||||||||| || | ||| Sbjct 816 CGC-GAGAGA-AGGTACCTC-CAGTTG-TACTGCTTTGGCCGTGAAATTCATA-TCCAAA 870 Query 911 -ACCCAAAAGTTCTCGCAGAGTTAAAGAAAGAACATGAGGTGATCCTTGA-AAGCAGAGA 968 |||| ||||| || |||||| | ||| || ||| ||| || | || || |||| | Sbjct 871 GACCCGAAAGTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAA-CAGAAA 929 Query 969 AGACAAAG-AAGGTGGAGTTA-CTTGGGAAGAATACAGACACAAGATGACTTTCACCAAC 1026 ||| ||| ||| |||||||| | ||||||||||||| |||||| ||||||||||| ||| Sbjct 930 AGA-TAAGAAAGCTGGAGTTAGC-TGGGAAGAATACACACACAACATGACTTTCACAAAC 987 Query 1027 ATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAAGCG 1086 ||||||||||||||||| ||||| | ||||| | | ||| | || ||| |||| || Sbjct 988 ATGGTTATCAATGAGTCGCTTCGCCTGTCAAACACGACCCCTTTATTGTTTCGAAAGGCA 1047 Query 1087 GTAAAGGATGTGGAAATCAAAGG--A-TAC-AC-------------C-ATTCCAGCAGGT 1128 | | ||||| || |||||||| | ||| || | ||||| || ||| Sbjct 1048 CTGCACGATGTTGAGATCAAAGGCAAGTACTACTTGGAAAGATATACAATTCCGGCTGGT 1107 Query 1129 TGGATAGT-G-ATGATTATACCTTCAGTGGTTCATTTTGATCCTGA-AATCTATGAAAAC 1185 ||||| || | | | || |||||||| |||||||| ||||||| | || |||||| ||| Sbjct 1108 TGGATTGTGGCA-G-TTGCACCTTCAGCGGTTCATTATGATCCT-ACAAACTATGAGAAC 1164 Query 1186 CCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAGTTG-C--GGGCTGGATCTAAA 1242 || ||||||||||||||||||||||||||||||||||| || | ||| || |||||| Sbjct 1165 CCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGACTCGGG--GG-TCTAAA 1221 Query 1243 ACGTTCATGGTGTTTGGAA 1261 |||||||||| |||||||| Sbjct 1222 ACGTTCATGGCGTTTGGAA 1240 > Ahg924121 jgi|Araly1|924121|scaffold_105402.1 Length=499 Score = 198 bits (107), Expect = 8e-50 Identities = 280/362 (77%), Gaps = 18/362 (5%) Strand=Plus/Plus Query 989 CTTGGGAAGAATACAGA-CACAAGATGACTTTCACCAACATGGTTATCAATGAGTCTCTT 1047 ||||| ||||||| ||| | || ||||| |||||| | ||||||||||||||||||||| Sbjct 1 CTTGGAAAGAATATAGATC-CATGATGAAATTCACCCATATGGTTATCAATGAGTCTCTT 59 Query 1048 CGAATAACAAACTTGGCTCCTATG-T-TATTTAGAAAAGCGGTAAAG-GATGTGGAAATC 1104 | || | ||| | || || | | |||||||| | ||| || |||||||| ||| Sbjct 60 TGTTTAGGGAGTTTGTCACC--TGCTATGTTTAGAAAGGTGGT-GAGTGATGTGGAGATC 116 Query 1105 AAAGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTT 1163 ||||| || || ||||||||||| ||||| || | || || | || || | |||||| Sbjct 117 AAAGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTA 175 Query 1164 TGATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAG 1222 ||| ||| ||||||||||| || || | |||||||||||||||||||||||||||||| | Sbjct 176 TGACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGG 234 Query 1223 AGTTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGC 1280 | |||| | ||| |||||||||||||||| |||||| || | |||| ||| || Sbjct 235 AATTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGC 292 Query 1281 TGGTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTT 1339 || |||||||||||||||||| ||| | | |||||||||||||||| || || || | Sbjct 293 AGGAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGT 351 Query 1340 AT 1341 || Sbjct 352 AT 353 > Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1 Length=1579 Score = 169 bits (91), Expect = 6e-41 Identities = 224/286 (78%), Gaps = 18/286 (6%) Strand=Plus/Plus Query 1030 GTTATCAATGAGTCTCTTCGAATAACAAACTTGGCTCCTATGTTATTTAGAAAAGCGGTA 1089 |||||||||||||| ||||| | ||||| | | ||| | || ||| |||| || | Sbjct 1131 GTTATCAATGAGTCGCTTCGCCTGTCAAACACGACCCCTTTATTGTTTCGAAAGGCACTG 1190 Query 1090 AAGGATGTGGAAATCAAA-G---GATACACCATTCCAGCAGGTTGGATAGT-G-ATGATT 1143 | ||||| || |||||| | |||| || ||||| || |||||||| || | | | || Sbjct 1191 CACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGTTGGATTGTGGCA-G-TT 1248 Query 1144 ATACCTTCAGTGGTTCATTTTGATCCTGA-AATCTATGAAAACCCTTTTGAGTTTAATCC 1202 |||||||| |||||||| ||||||| | || |||||| ||||| |||||||||||||| Sbjct 1249 GCACCTTCAGCGGTTCATTATGATCCT-ATAAACTATGAGAACCCATTTGAGTTTAATCC 1307 Query 1203 ATGGAGATGGGAGGGGAAAGAGTTG-C--GGGCTGGATCTAAAACGTTCATGGTGTTTGG 1259 ||||||||||||||||||||| || | ||| || |||||||||||||||| |||||| Sbjct 1308 ATGGAGATGGGAGGGGAAAGAAATGACTCGGG--GG-TCTAAAACGTTCATGGCGTTTGG 1364 Query 1260 AACCGGACTTAGACAATGCGCT-GGTGCAGAGTTTGCTAGGCTTCA 1304 || ||| |||||| || | | |||||||||||||| ||||||| Sbjct 1365 AAGTGGAGTTAGACTTTGTG-TAGGTGCAGAGTTTGCGCGGCTTCA 1409 > Ahg924130 jgi|Araly1|924130|scaffold_105411.1 Length=1543 Score = 167 bits (90), Expect = 2e-40 Identities = 361/485 (74%), Gaps = 45/485 (9%) Strand=Plus/Plus Query 890 CTGTGAAATTCCTA-TTGGAAAACCCAAAAGTTCTCGCAGAGTTAAAGAAAGAACATGAG 948 ||||||||||| || | |||||||| ||||| || ||| | |||| ||| |||||| Sbjct 925 CTGTGAAATTCATAGCT-GAAAACCCCAAAGTGCTTATGGAGCTGAAGAGAGAGCATGAG 983 Query 949 GTGATCCTTGA-AAGCAGAGAAGACAAAGAAG-GTGGAGTTACTTGGGAAGAATACAGA- 1005 ||||| | || ||||| || |||| || ||||||||||||| ||||||| ||| Sbjct 984 ACCATCCTCCATAA-CAGAGCTGATAAAG-AGTCTGGAGTTACTTGGAAAGAATATAGAT 1041 Query 1006 CACAAGATGACTTTCACCAACATGGTTATCAATGAGTCTCTTCGAATAACAAACTTGGCT 1065 | || ||||||||||||| | ||||||||||||||||||||||| || || ||| | Sbjct 1042 C-CATGATGACTTTCACCCATATGGTTATCAATGAGTCTCTTCGTTTAGGAAGTTTGTCA 1100 Query 1066 CCTATG-T-TATTTAGAAAAGCGGTAAAG-GATGTGGAAATCAAAGG--A---T-A---- 1112 || || | | |||||||| | ||| || |||||||| |||||||| | | | Sbjct 1101 CC--TGCTATGTTTAGAAAGGTGGT-GAGTGATGTGGAGATCAAAGGCAAGTTTGAGTCT 1157 Query 1113 --C---------ACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCA 1160 | || ||||||||||| ||||| || | || || | || || | |||| Sbjct 1158 CTCTTTTGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCA 1216 Query 1161 TTTTGATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGA 1219 || ||| ||| ||||||||||| || || | ||||||||||||||||||||||||||||| Sbjct 1217 TTATGACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGA 1275 Query 1220 AAGAGTTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATG 1277 | || |||| | ||| |||||||||||||||| |||||| || | |||| ||| Sbjct 1276 AGGAATTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATG 1333 Query 1278 CGCTGGTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCA 1336 || || |||||||||||||||||| ||| | | |||||||||||||||| || || | Sbjct 1334 TGCAGGAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAA 1392 Query 1337 CTTAT 1341 | ||| Sbjct 1393 CGTAT 1397 > Ahg952412 jgi|Araly1|952412|scaffold_69900001.1 Length=260 Score = 159 bits (86), Expect = 4e-38 Identities = 161/195 (83%), Gaps = 13/195 (7%) Strand=Plus/Plus Query 27 TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC 84 ||| || |||| ||||||||||| |||| | | || |||| ||| | |||||| || || Sbjct 48 TTG-GTCATAGCTTTAGTGGTTGTGAGGATCAGCCACTGGTTGTATCGATGGTCGAACAC 106 Query 85 ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG 139 ||||||| | | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 107 TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG 165 Query 140 AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA 198 | ||| | ||||||||||||||||||||||||||||||| ||| || | ||||||||| Sbjct 166 AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG 224 Query 199 AAGATG-TTAAGGTA 212 | ||| |||||||| Sbjct 225 A-GATTATTAAGGTA 238 > Ahg924128 jgi|Araly1|924128|scaffold_105409.1 Length=472 Score = 147 bits (79), Expect = 3e-34 Identities = 188/240 (78%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 1107 AGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTG 1165 ||| || || ||||||||||| ||||| || | || || | || || | |||||| || Sbjct 92 AGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATG 150 Query 1166 ATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAG 1224 | ||| ||||||||||| || || | |||||||||||||||||||||||||||||| || Sbjct 151 ACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAA 209 Query 1225 TTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTG 1282 |||| | ||| |||||||||||||||| |||||| || | |||| ||| || | Sbjct 210 TTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAG 267 Query 1283 GTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341 | |||||||||||||||||| ||| | | |||||||||||||||| || || || ||| Sbjct 268 GAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 326 > Ahg924124 jgi|Araly1|924124|scaffold_105405.1 Length=520 Score = 145 bits (78), Expect = 1e-33 Identities = 181/230 (79%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 1117 ATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTGATCCTGAAAT 1175 ||||||||||| ||||| || | || || | || || | |||||| ||| ||| |||| Sbjct 150 ATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATGACCCTCAAAT 208 Query 1176 CTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAGTTGCGG-GCT 1233 ||||||| || || | |||||||||||||||||||||||||||||| || |||| | | Sbjct 209 CTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTG-T 266 Query 1234 GGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTGGTGCAGAGTT 1292 || |||||||||||||||| |||||| || | |||| ||| || || |||||||| Sbjct 267 GGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAGGAGCAGAGTT 325 Query 1293 TGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341 |||||||||| ||| | | |||||||||||||||| || || || ||| Sbjct 326 TGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 374 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5