BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44990.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484893 jgi|Araly1|484893|fgenesh2_kg.5__885__AT3G44990.1 1838 0.0
> Ahg484893 jgi|Araly1|484893|fgenesh2_kg.5__885__AT3G44990.1
Length=1269
Score = 1838 bits (995), Expect = 0.0
Identities = 1198/1290 (93%), Gaps = 38/1290 (3%)
Strand=Plus/Plus
Query 1 ATTCATTTCATACATATTTGTCTCTCTTAAATGTGTTTATTTCCCCTTTTGTAGTAACCA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATTCATTTCATACATATTTGTCTCTCTTAAATGTGTTTATTCCCCCTTTTGTAGTAACCA 60
Query 61 CTCAAAAGGTTTTACTTCAC-TCAAAAATGGCTTTGTCTCTTATCTTTCTAGCTCTCTTA 119
||||||||| |||| ||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAAAGGCTTTAGTTCACTTTAGAAATGGCTTTGTCTCTTATCTTTCTAGCTCTCTTG 120
Query 120 GTGTTGTGCCCTAGTAGTGGTCACAGCCAACGTTCTCCTTCACCGGGATACTACCCGAGT 179
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 121 GTGTTGTGCCCTAGTAGTGGTCACAGCCAGGGTTCTCCTTCACCCGGATACTACCCGAGT 180
Query 180 TCCCGAGTACCGACTTCACCTTTTGATCGTGAATTCCGTACTTTATGGGGCTCTCAACAC 239
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCGAGTAGCGACTTCATCTTTTGATCGTGAATTCCGTACTTTATGGGGCTCTCAACAC 240
Query 240 CAACGTAGAGAGCAAGACGTTGTCACTCTTTGGCTCGACAAATCCACTGGGAGTGGGTTC 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAACGTAGAGAGCAAGACGTTATCACTCTTTGGCTCGACAAATCCACTGGGAGTGGGTTC 300
Query 300 AAGTCTCTTCGTCCATACCGGTCGGGCTACTTTGGTGCTTCCATTAAGCTCCAACCAGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGTCTCTTCGTCCATACCGGTCGGGCTACTTTGGTGCTTCCATTAAGCTCCAACCAGGC 360
Query 360 TTCACTGCTGGAGTGGATACATCCCTCTATCTCTCAAACAACCAAGAGCATCCTGGAGAC 419
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TTCACGGCTGGAGTTGATACATCCCTCTACCTCTCAAACAACCAAGAGCATCCTGGAGAC 420
Query 420 CACGATGAGGTCGATATCGAGTTTCTAGGGACAACGCCAGGGAAGCCTTATTCCCTTCAA 479
||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 CACGACGAGGTTGATATCGAGTTTCTAGGGACGACGCCAGGGAAGCCTTATTCTCTTCAA 480
Query 480 ACGAATGTCTTCGTTAGGGGAAGTGGCGACCGAAATGTCATTGGAAGAGAAATGAAATTT 539
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGAATGTATTCGCTAGAGGAAGTGGCGACCGAAATGTCATTGGAAGAGAAATGAAATTT 540
Query 540 ACCTTGTGGTTTGACCCTACTCAAGATTTTCACCATTACGCAATTTTGTGGAACCCTAAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 ACCTTGTGGTTTGACCCTACTCAAGATTTTCACCATTACGCAATTTTGTGGAATCCTAAC 600
Query 600 CAAATTGTATTCTTTGTAGACGATGTACCGATACGTACATATAATAGAAAGAATGAAGCT 659
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 GAAATTGTATTCTTCGTAGACGATATACCGATACGTACATATAATAGAAAGAATGAAGCT 660
Query 660 ATATTCCCCACAAGACCGATGTGGGTTTACGGATCGATATGGGATGCATCGGACTGGGCC 719
| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 661 ACGTTCCCCACTAGACCGATGTGGGTGTATGGATCTATATGGGATGCATCGGACTGGGCC 720
Query 720 ACAGAAAATGGAAGGATCAAAGCCGACTATCGATACCAACCATTTGTGGCTAAGTACAAA 779
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 ACGGAAAATGGAAGGATTAAAGCCGACTATCGGTACCAACCATTTGTGGCTAAGTACAAA 780
Query 780 AACTTTAAGCTAGCGGGATGCACAGCGGATAGCTCTAGCTCATGCAGACCGCCATCGCCT 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACTTTAAGCTAGCCGGATGCACAGCGGATAGCTCTAGCTCATGCAGACCGCCATCGCCT 840
Query 840 GCACCCATGCGCAACCGCGGGTTGAGCCGGCAGCAGATGGCGGCATTGACATGGGCACAG 899
||||| || | |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 GCACCAATCCTTAACCAAGGGTTGAGCCGGCAGCAGATGGCGGCATTGGCATGGGCACAG 900
Query 900 AGGAACTTCTTGGTCTATAACTATTGCCATGATCCGAAAAGAGACCATACCCAAACACCA 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 AGGAACTTCTTGGTCTATAACTATTGCCATGACCCGAAAAGAGACCATACCCAAACACCA 960
Query 960 GAATGTTAAAACAAACAAACAAAAGAAAGGTTATAATAATTTTATTTTGCATTATCAAAC 1019
||||| ||||||||||||||||| || | || |||| | ||||| ||||
Sbjct 961 GAATGCTAAAACAAACAAACAAA-------TT-T--TA-TTTT-----GAATTATAAAAC 1004
Query 1020 ATACATG-AA-T-AAT--TGG-AGGTCTTGTGACGGGTCCACACTGGAAACTATATTGAA 1073
|||||| || | ||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1005 ATACATTTAAGTTAATAATGGGAGGTCTTGTGACGGGTCCACACTGGAAACTAAATTGAA 1064
Query 1074 GCAGTTGAGCGTCCGGTCCTCTATGATTTGAGATTAAAAAGAAAA-GGTTTTGTTTTT-- 1130
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1065 GCAGTTGAGCGTCCGGTCCTCTATGATTTGAGATTAAAACGAAAAAGGTTTTGTTTTTTT 1124
Query 1131 CAATACTTTGTAATGTTTCCATTTGGTATCTTTCTTATAATTGT---AATATTGTGTGAT 1187
||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 1125 CAATACTTTGTAATGTT-CCATTTCGTATATTTCTTATAATTGTTGCAATATTGTGTGAT 1183
Query 1188 CACATATAT-TA-ATATCT--GGTATTGTATTGTTGTGTGAACCaaaaaagaaagaaaaa 1243
||||||||| || |||| | ||||||||||||||||||||||||||||||||| || ||
Sbjct 1184 CACATATATATATATATATATGGTATTGTATTGTTGTGTGAACCAAAAAAGAAA-AAGAA 1242
Query 1244 GAATGGAAGTTGTTCTTTCGAAGGTGGCTT 1273
| ||||||||||||||||||||||||||
Sbjct 1243 -A--GGAAGTTGTTCTTTCGAAGGTGGCTT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5