BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45000.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897280 jgi|Araly1|897280|Al_scaffold_0005_1246 802 0.0
> Ahg897280 jgi|Araly1|897280|Al_scaffold_0005_1246
Length=690
Score = 802 bits (434), Expect = 0.0
Identities = 531/579 (92%), Gaps = 1/579 (0%)
Strand=Plus/Plus
Query 21 TTC-AGATATTGAGAGAGAAGAAAGAAATGTGCATAAAGCTATCAAAGACTCGGTAAAGC 79
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 107 TTCGAGATATTGAGAGAGAAGAAAGAAATGTACATAAAGCTATCAAAGACTCGGTGAAGC 166
Query 80 GGAATGATTTGGTCACTGCTAAGGCACTTGCTAGGGAAATAGTGAGTTCTAGAAGAACGG 139
|| ||||| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 167 GGTATGATATGGTCACTGCTAAGGCACTAGCTAGAGAAATAGTGAGATCGAGAAGAACGG 226
Query 140 TTAAGCGGCTATACGAGAATAAAGCGCAGGTGAATTCTATTTCAATGCATCTTGGGGAGA 199
|||||||| ||||||||||||||||| || ||||||| || |||||||||||||| ||||
Sbjct 227 TTAAGCGGTTATACGAGAATAAAGCGAAGATGAATTCAATATCAATGCATCTTGGAGAGA 286
Query 200 GTATTGCTACTGCGGTAACTGTTGGGAATCTTTCGAAGAGTGGTGAGGTTATGAAGCTTG 259
||||||| | | ||| ||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 287 GTATTGCGATTTCGGGAACAGTTGGGCTTCTTTCGAAGAGCGGTGAGGTTATGAAGCTTG 346
Query 260 TTAATAGTCTAATGAAAGCTCCAGAGATTGCTGTGACAATGCAGGCATTTAGCAAAGAGA 319
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 347 TTAATAGTCTAATGAAAGCTCCAGATATGGCTGTGACAATGCAGGCATTTAGCAAAGAGA 406
Query 320 TGACCAAGACTGGGGTTATTGAAGAGTTTGTGAGTGATGCTGTGGATAATGCCTTAGATT 379
|||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 407 TGACCAAGGCTGGGGTTATTGAAGAGTTTGTAAGTGATGCGGTTGATAATGCCTTAGATT 466
Query 380 CTGAGGATATTGAAGAGGAGATCGAGGAAGAGGTTGATAAGGTATTGACTGCCATAGCAG 439
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 467 CTGAGGATATCGAAGAGGAGATCGAGGAAGAGGTTGATAGGGTATTGACTGCCATAGCAG 526
Query 440 GAGAGACTGCAGCTGAGCTCCCGGAAGCAGTTAGGAAGCAAAAGATGAATGTTCCAGCTC 499
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||| |
Sbjct 527 GAGAGACTGCAGCTGAGCTCCCAGAAGCAGTTAGGAAGGAAAAGATAAATGTACTAGCGC 586
Query 500 AAAAGGCGGAAACTTTACACGGGGAAGATGCAATTGTAGAAGGAGTTGATGCTGAAGAAG 559
||||||||| ||||| |||||||||||||||||||| | ||||||||||| |||||| |
Sbjct 587 AAAAGGCGGGAACTTCACACGGGGAAGATGCAATTGCACAAGGAGTTGATAATGAAGACG 646
Query 560 AACTAGAGGCCATTAGATATCGGCTAGCCAATGTTAGAT 598
||||||||| ||||||| |||||| |||||||||||||
Sbjct 647 AACTAGAGGACATTAGAGCTCGGCTCGCCAATGTTAGAT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5