BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45010.1
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484895 jgi|Araly1|484895|fgenesh2_kg.5__887__AT3G45010.1 2630 0.0
> Ahg484895 jgi|Araly1|484895|fgenesh2_kg.5__887__AT3G45010.1
Length=1676
Score = 2630 bits (1424), Expect = 0.0
Identities = 1593/1677 (95%), Gaps = 1/1677 (0%)
Strand=Plus/Plus
Query 33 aaaaaaaTGGACTCCAAAACAACttttctcacatttctcctctgtattttcattttctct 92
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 1 AAAAAAATGGACTCCAAAACAACTTTTCTCACATTTGTTCTCTGTATTTCCATTTTCTCT 60
Query 93 catttttcaCCCTCAACTTCCAAATCTCTGACAGAAAAGCCCTTATCTTTCTCACCGTCG 152
|||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 61 CATTTTTCACCCTCAAGTTCCAAATCTATCACAGAAAAGCCTTTATCTTTCTCACCGTCG 120
Query 153 GCGAGTTTGCCGACTCTCACGGCGGAGAGACTTATCAAAGGATTCAATTTGATGCCTACA 212
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GCGAGTTTGCCGACTCTCACGGCGGAGAGACTAATCAAAGGATTCAATTTGATGCCTACA 180
Query 213 CGCGACGTCAATGTCATCGATGAAGAAGGTTCTGAGGCTCCGAGACTGGTCGAGAGAGCA 272
|| ||||| ||||||||||||||||| ||||||||||||||||| || |||||||||| |
Sbjct 181 CGTGACGTGAATGTCATCGATGAAGACGGTTCTGAGGCTCCGAGGCTAGTCGAGAGAGAA 240
Query 273 TTCGATTTGCCGGCGGCGGTTGACCGTCGTGGCTCCGGTGGTTCTCCGTCGGTTCAAGAT 332
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TTCGATTTGCCGGCGGAGGTTGACCGTCGTGGCTCCGGTGGTACTCCGTCGGTTCAAGAT 300
Query 333 TTTGGTCACCATGCTGGTTACTACAAACTCCCTAACTCAAAAGCAGCAAGGATGTTCTAC 392
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 TTTGGTCACCATGCTGGTTACTACAAACTCCCTAATTCAAAAGCAGCCAGGATGTTCTAC 360
Query 393 TTTTTCTTCGAGTCAAGGACGAACAAAGCCGATCCAGTGGTGATTTGGCTAACCGGTGGA 452
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 361 TTTTTCTTCGAGTCAAGGACTAACAAAGCCGATCCAGTGGTCATTTGGCTAACTGGTGGA 420
Query 453 CCAGGTTGCAGTAGTGAACTGGCTCTGTTCTACGAGAACGGACCGTTCACCGTCTCTAAC 512
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CCTGGTTGCAGTAGTGAACTGGCTCTGTTCTACGAGAACGGACCGTTCACCGTCTCCAAC 480
Query 513 AACTCATCTCTTTCTTGGAACGAATTTGGTTGGGACAAGGCATCAAATCTAATCTACGTG 572
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 AACTCATCTCTTTCTTGGAACGAATTTGGTTGGGACAAGGCATCGAATCTAATCTACGTG 540
Query 573 GACCAACCGGTAGGAACTGGTTTCAGTTACACATCGGACCAAAGCGATCTTCGTCATGAC 632
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct 541 GACCAACCGGTTGGAACCGGTTTCAGTTACACATCTGACCAAAGCGATCTTCGACACGAC 600
Query 633 GAGGATGGTGTCAGTAATGACCTTTATGACTTCTTACAGGCGTTTTTCAAAGAGCATCCA 692
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 601 GAGGATGGTGTCAGTAATGACCTTTACGACTTCTTACAGGCTTTTTTCAAAGAGCATCCA 660
Query 693 CAATTTGTGAAGAATGATTTTTACATTACCGGTGAATCCTACGCTGGACATTACATTCCG 752
||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 661 CAATTTGTGAAGAATGACTTTTACATCACCGGTGAATCCTATGCCGGACATTACATTCCG 720
Query 753 GCATTGGCTTCACGTGTTCACCGTGGAAACAAGAACAAAGAAGGAACTCACATTAACCTT 812
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 GCATTGGCTTCACGGGTTCACCGTGGTAACAAGAACAAAGAAGGAACTCACATTAACCTT 780
Query 813 AAGGGTTTTGCGATCGGTAACGGTTTAACCAACCCGGAGATTCAATATGGTGCGTATGCG 872
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 781 AAGGGTTTTGCAATCGGTAACGGTTTGACCAACCCGGAGATTCAATATGGTGCTTATGCG 840
Query 873 GATTACGCGCTAGACATGAATTTAATCACACAGTCTGATCATGATAACCTCAACCGTTAT 932
||||| |||||||||||||| || || |||||||||||||| |||||||| |||||| |
Sbjct 841 GATTATGCGCTAGACATGAAGTTGATAACACAGTCTGATCACGATAACCTTAACCGTAAC 900
Query 933 TACGCAACTTGTCAACAATCTATCAAAGAATGCAGCGCGGATGGTGGTGAAGGGGATGCG 992
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 901 TACGCAACTTGTCAACAATCCATCAAAGAATGCAGCGCGGATGGTGGGGAAGGTGATGCT 960
Query 993 TGTGCTTCTTCTTACACTGTCTGCAACAACATTTTCCAAAAGATAATGGATATTGCTGGA 1052
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 961 TGTGCTTCTTCTTACGTTGTCTGCAACAACATTTTCCAAAAGATTATGGATATTGCAGGA 1020
Query 1053 AACGTAAACTATTATGACGTGAGGAAACAATGTGAAGGAAGCTTATGCTATGATTTCTCG 1112
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 AACGTAAACTATTACGACGTGAGGAAACAATGTGAAGGAAGCTTGTGCTATGATTTCTCG 1080
Query 1113 AACATGGAGAATTTCTTGAACCAGAAATCGGTGCGGAAGGCATTAGGTGTGGGAGATATC 1172
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 AACATGGAGAAGTTCTTGAACCAGAAATCGGTACGGAAGGCATTAGGTGTGGGAGATATC 1140
Query 1173 GAGTTTGTGTCTTGCAGTACAGCGGTCTACGAAGCAATGCAGATGGACTGGATGCGGAAT 1232
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1141 GAGTTTGTGTCTTGTAGTACAGCGGTTTACGACGCAATGCAGATGGACTGGATGCGGAAT 1200
Query 1233 CTTGAGGTCGGGATTCCAGCTCTTCTTCAAGATGGAATTAAGCTCCTTGTTTATGCCGGA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1201 CTTGAGGTCGGGATTCCAGCTCTTCTTCAAGATGGAATTAAGCTCCTTGTTTACGCCGGG 1260
Query 1293 GAATACGATCTCATCTGCAATTGGCTCGGAAACTCAAAGTGGGTTCACGAAATGGAATGG 1352
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1261 GAATACGATCTCATCTGCAATTGGCTCGGAAATTCGAAGTGGGTTCACGAGATGGAATGG 1320
Query 1353 TCAGGCCAGAAAGAGTTTGTAGCAGCAGCGACAGTTCCATTCCACGTAGACAACAAAGAA 1412
|||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 1321 TCAGGCCAGAAACAGTTTGTAGCAGCCGCGACAGTTCCCTTCCTCGTAGACAACAAAGAA 1380
Query 1413 GCGGGTTTAATGAAGAACTACGGTTCACTCACTTTCCTAAAGGTCCATGATGCTGGACAC 1472
|| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1381 GCCGGTTTGATGAAGAACTACGGTTCACTTACTTTCCTCAAGGTCCATGATGCTGGACAC 1440
Query 1473 ATGGTTCCGATGGATCAGCCAAAGGCAGCATTGCAAATGCTTCAGAACTGGATGCAAGGA 1532
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 ATGGTTCCAATGGATCAGCCAAAGGCAGCATTGCAAATGCTTCAAAACTGGATGCAAGGA 1500
Query 1533 AAGCTCAGTACACCCACTGGTCGGACCGCTCATCAGTAAATCCAAATTCCGAACCGGCTG 1592
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1501 AAGCTCAGTACACCCACTGGTCGGACCGCTCATCAGTAAATCCAAATTCAGAACCGACTG 1560
Query 1593 AATTATTATGTATTTAGGAGATCAATATTTTACTTTTAAGAAAAGCTAAATAACATATAC 1652
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1561 AATTATTATGTATTTAGGAGATCAATACTTTACTTTTAAGAAA-GCTAAATAACATATAC 1619
Query 1653 TTGTGAATTATTTCTATCAATACACAGGAAACTTCATTGTTAATTTCTAACCATCAT 1709
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1620 TTGTGAATTATTTCTATAAATACACAGGAAACTTCATTGTTAATCTCTAACCATCAT 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5