BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45020.1

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484896 jgi|Araly1|484896|fgenesh2_kg.5__888__AT3G45020.1          658    0.0  


> Ahg484896 jgi|Araly1|484896|fgenesh2_kg.5__888__AT3G45020.1
Length=483

 Score =  658 bits (356),  Expect = 0.0
 Identities = 417/447 (93%), Gaps = 1/447 (0%)
 Strand=Plus/Plus

Query  74   AAGCAAATGACAGTTTTGAAAAGGTACGTCTTAAGGCTGTTCATGTCGATCAAGTACATA  133
            |||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct  8    AAGCAAATGACAGTTTTGAAAAGGTATGTATTGAGGTTGTTCATGTCGATCAAGTACATA  67

Query  134  ACAGCAAACGTAGTGGACAGAAACAACGGGAGAATAGTGACGACAGCTTCAACCGTAGAG  193
            ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct  68   ACAGCAAACGTAGTGGACAGAAACAACGGGAGAATAGTGACTACGGCTTCAACTGTAGAG  127

Query  194  CACACGATCAAGAACTCCCTAGAGTGTGGCCGTACTTGCAATGCTAAGGCGGCGGCTATC  253
            ||| ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| 
Sbjct  128  CACGCGATCAAGAACTCACTGGAGTGTGGTCGTACTTGCAATGCTAAGGCAGCGGCTATT  187

Query  254  GTAGGAGAGGTTTTAGCAATGAGGCTGAAAGTGGAAGGGCTTCAGGATGGGCAAGGAAGA  313
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  188  GTAGGAGAGGTTTTAGCGATGAGGCTGAAAGTGGAAGGGCTTCAAGATGGGCAAGGAAGA  247

Query  314  GGAATACATGCTGATGTCAAGAAAGAAATCGAAAAGAAAGGGTTTAAGAGTCGAACTAAG  373
            || || ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  248  GGTATCCATGCCGATGTTAAGAAAGAAATCGAAAAGAAAGGGTTTAAGAGTCGAACCAAG  307

Query  374  GTATGGGCTGTTATTAACTCTCTTAGAAACAATGGTGTTACACTCATTCTTGACgatgat  433
            ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct  308  GTATGGGCTGTTATTAATTCTCTTAGAAACAATGGTGTTACTCTCATTTTTGACGATGAT  367

Query  434  gatgatgatgatgaGTATCGTGATCGTTCTTTTGAGGGTCATCGGTGAATTCACAATCTT  493
            ||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||| |||
Sbjct  368  GATGATGATGATGAGTATCGTGATCGTTCTTATGAGGGTCATCAGTGAATTTGCAAGCTT  427

Query  494  TGTTTTTTATGTGTTATCTTCTCTAGT  520
            ||||||| |||||| ||||||||||||
Sbjct  428  TGTTTTT-ATGTGTCATCTTCTCTAGT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25237371054


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5