BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45030.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1 603 7e-172
Ahg950998 jgi|Araly1|950998|scaffold_802885.1 577 4e-164
Ahg937471 jgi|Araly1|937471|scaffold_501662.1 468 3e-131
> Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1
Length=595
Score = 603 bits (326), Expect = 7e-172
Identities = 496/570 (87%), Gaps = 44/570 (8%)
Strand=Plus/Plus
Query 26 CTTGAAGCAAAAAGCTATCCGCCGTCGACTCGAGCTTCGTTCGTCTCTC------TGC-- 77
|||| |||||||||| |||||||||| | ||||||||||||||||| ||
Sbjct 36 CTTGCAGCAAAAAGCAATCCGCCGTC-A----AGCTTCGTTCGTCTCTCAGAAGAAGCTG 90
Query 78 AAATATGGCGACAG-CGTATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 136
||| || ||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 91 AAAAAT-ATGAC-GTCGTATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAACCAC 148
Query 137 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTTGAGA 196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 149 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCTTCCAAGAATGTCAAGAACCTCGAGA 208
Query 197 AAGTGTGCACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAG 256
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 209 AAGTGTGCACTGATTTGGTCCGTGGAGCCAAGGACAAGAGACTCAGAGTCAAGGGACCAG 268
Query 257 TGAGAATGCCCACTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAA 316
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 269 TGAGAATGCCCACCAAGGTTCTTAAGATCACTACCCGAAAAGCTCCTTGTGGTGAAGGAA 328
Query 317 CCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCT 376
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 329 CCAACACATGGGACAGATTTGAACTTCGGGTACACAAGCGAGTGATTGATCTCTTCAGTT 388
Query 377 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGG 436
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 389 CTCCTGATGTGGTCAAGCAGATCACTTCCATCACCATTGAACCTGGTGTTGAAGTTGAGG 448
Query 437 TCACCATCGCCGACTCGTAGATCGACTCTCTTA-----CT-TCTGT-TTTTGCTC--TT- 486
||||||||||||||||||||||| || | |||| | ||| | |||| ||| ||
Sbjct 449 TCACCATCGCCGACTCGTAGATCAAC-C-CTTAAGAAACAATCT-TCTTTTCCTCGGTTC 505
Query 487 -T--CT-C--T--TTTA-AG----A-AA-CAAATGTTTTGTTGTACTGAAACTCAAGTTC 531
| || | | ||| || | || |||||||||||||||| ||||| ||||||||
Sbjct 506 GTAACTACACTCCTTTTGAGTTGCATAAACAAATGTTTTGTTGTAGTGAAATTCAAGTTC 565
Query 532 TTTTGTTTTCTTAATTGAATAGATTTTGAA 561
|| ||||||||||||| |||||||||||||
Sbjct 566 TTGTGTTTTCTTAATTAAATAGATTTTGAA 595
> Ahg950998 jgi|Araly1|950998|scaffold_802885.1
Length=416
Score = 577 bits (312), Expect = 4e-164
Identities = 359/382 (94%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 78 AAATATGGCGACAGCGT-ATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 136
||||||| |||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AAATATGACGAC-GTATCAACAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCAC 76
Query 137 TCGAGCAGATTCACAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTTGAGA 196
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 77 TCGAGCAGATTCATAAGATCAGGATTACTCTATCCTCCAAGAATGTCAAGAACCTCGAGA 136
Query 197 AAGTGTGCACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAG 256
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 137 AAGTGTGCACTGACTTGGTTCGTGGAGCCAAGGACAAGAGACTTAGAGTCAAGGGTCCAG 196
Query 257 TGAGAATGCCCACTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAA 316
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 197 TGAGAATGCCCACCAAGGTTCTTAAGATCACCACCCGAAAAGCTCCTTGTGGTGAAGGAA 256
Query 317 CCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCT 376
| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 257 CTAATACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTGATTGATCTCTTCAGCT 316
Query 377 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 317 CTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTCGAGG 376
Query 437 TCACCATCGCCGACTCGTAGAT 458
||||||||||||| || |||||
Sbjct 377 TCACCATCGCCGATTCTTAGAT 398
> Ahg937471 jgi|Araly1|937471|scaffold_501662.1
Length=409
Score = 468 bits (253), Expect = 3e-131
Identities = 331/369 (90%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 91 GCGTATCAACCAATGAAA-CCAGGAAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCA 149
|||||| |||| |||||| ||| ||| |||||||| ||||| || |||| |||||||||
Sbjct 24 GCGTATGAACCGATGAAACCCACTAAA-GCTGGTTTAGAAGAACCCCTCGTGCAGATTCA 82
Query 150 CAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTT-GAGAAAGTGTGCACTG 208
||||||||||| |||||||| || || ||||||||||| ||| || |||||||||||||
Sbjct 83 TAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAA-CTTGGAAAAAGTGTGCACTG 141
Query 209 ATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAGTGAGAATGCCCA 268
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 142 ACTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCA 201
Query 269 CTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAACCAATACATGGG 328
|||||||||| |||||||| ||| |||| || || ||||||||||| |||||||| ||||
Sbjct 202 CTAAGGTTCTTAAGATCACCACCAGAAAGGCACCTTGTGGTGAAGGTACCAATACTTGGG 261
Query 329 ACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCTCTCCTGATGTGG 388
||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 262 ACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCTCTTCAGCTCCCCTGATGTGG 321
Query 389 TCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATCGCCG 448
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 322 TTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACTATTGCTG 381
Query 449 ACTCGTAGA 457
|||| ||||
Sbjct 382 ACTCTTAGA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5