BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45040.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484897 jgi|Araly1|484897|fgenesh2_kg.5__889__AT3G45040.1 2900 0.0
> Ahg484897 jgi|Araly1|484897|fgenesh2_kg.5__889__AT3G45040.1
Length=1853
Score = 2900 bits (1570), Expect = 0.0
Identities = 1760/1854 (95%), Gaps = 3/1854 (0%)
Strand=Plus/Plus
Query 10 TAAAACAACGAATCTCCGGCGAAATCATCATCTTCTCCGGCGATGAAGACGACGGCGACG 69
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TAAAACAACAAATCTCCGGCGAAATCATCATCATCTCCGGCGATGAAGACGACGGCGACG 60
Query 70 TCGTTTGTAACGGGAGAGAGAGTTGTAGTTTTC-GTCGTGGTTTCTCGTAttctcttatc 128
||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 61 TCGTTTGTAACAGGAGAGAGAGTTGTAG-TAGCAGTCGTGGTTTCTCGTATTCTCTTATC 119
Query 129 tcttcctttatcacttatctcccatggcttctccctcttcctcctctctctctccgcctt 188
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCCCTCTATCACTTATCTCCCATGGCTTCTCCCTCTTCCTCCTCTCTCTCTCCGCCTT 179
Query 189 cctcgtcgagatccgcgtcgagacttctccgtttcttctctctcATTTCAGCTCCAGACG 248
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CCTCATCGAGATCCGCGCCGAGACTTCTCCGTTTCTTCTCTCTCGTTTCAGCTCCAGACG 239
Query 249 CGGTGCGTCTTCAGGGATATTACTAGGAGCTGTGACACTTCCTTCTGTTATGATATCTAA 308
||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 240 TGGTGCTTCTTCAGGGATATTATTAGGAGCTGTAACACTTCCTTCTGTTATGATTTCTAA 299
Query 309 GTTAGTTCAGCTTTCAAGAGCTATTTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 368
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGGTTCAGCTTTCAAGAGCTATCTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 359
Query 369 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 419
Query 429 AGTGATTATGTCACAAGTGAGAAAAGATGAATCTTTGTCGTCATCGTCTATTTGGCTTAC 488
||||||||||||||||| |||||| | |||||||||||| || |||||| |||||||||
Sbjct 420 AGTGATTATGTCACAAGCGAGAAATGCTGAATCTTTGTCATCGTCGTCTGTTTGGCTTAT 479
Query 489 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTTTCACTTTCCAT 548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTCTCACTTTCCAT 539
Query 549 GATTTCACACACTGGCTTGAATACGTCATTGAAAATGTTGTGGATGTTATTTCATGGACT 608
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 540 GATTTCACACACTGGTTTGAATACTTCATTGAAAATGTTGTGGATGTTATTTCACGGCCT 599
Query 609 TGCAGCTGTGAAGTTGATTCGACATTTGCTTTGCACTTTCCCATCGTGTGCTTCGATAGG 668
||||||| ||||||| |||| ||||||||||||||| ||||| || |||||||| || ||
Sbjct 600 TGCAGCTTTGAAGTTAATTCAACATTTGCTTTGCACCTTCCCTTCTTGTGCTTCAATCGG 659
Query 669 GGAAGCACTTCTTGTGACCAGTGGTCTTGTTCTCTATTTTGGCGACTTTTTGGCATGCAC 728
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GGAAGCGCTTCTTGTGACTAGTGGTCTTGTTCTATATTTTGGCGACTTTTTGGCATGCAC 719
Query 729 AATTGCAAAGATTTTTGAGAAATTGATACCTGTGGATCTTGTCTCAATAAGCTATGGAAT 788
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 AATTGCAAAGATTTTCGAGAAATTGATACCTGTAGATCTTGTCTCAATAAGCTATGGAAT 779
Query 789 AAAGAGAACGGAAACCGGCATAATCGTTCAGGGTCTACTGTTGGGCCTTCTACTTTTCCC 848
|| ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 780 AAGGAGGACTGAAACCGGCATAATCGTCCAGGGTCTGCTGTTGGGCCTTCTACTTTTCCC 839
Query 849 GATGGTGTTTAGATTTGTTCTGCATATATATGAAAGCTCTTTGAGAAAGAGAGATGCTCG 908
||| ||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 GATAGTGTTCAGAATCGTTCTGCATATATATGAAAGCTCCTTGAGAAAGAGAGATGCTCG 899
Query 909 ACAAAGAAACTGCAGTGATGCTGCAAAATCTGTCTTATTCTTTGTTTCACTTCTATTTTT 968
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACAAAGAAACTGCAGTGATACTGCAAAATCTATCTTATTCTTTGTTTCACTTCTATTTTT 959
Query 969 TATGGTCGTGGCTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCAACCAGCATCCCTT 1028
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 960 TATGATCGTGACTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCGACCAGCATCCCTT 1019
Query 1029 CTTATGGGTGCTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1088
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTATGGGTACTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1079
Query 1089 CTGGATTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1148
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTGGGTTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1139
Query 1149 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTCTTGCC 1208
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTTTTGCC 1199
Query 1209 AGCTCTTGTCTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCAGCATTGGCAGTATT 1268
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1200 AGCTCTTGTGTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCTGCATTGGCGGTATT 1259
Query 1269 TGTTGCATTGGAGATCATTCGAATATGGAGAATTCAGCCTCTTGGAGAGCCTTTACATCA 1328
||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1260 TGTTGTATTGGAGATCATTCGAATCTGGAGAATTCAGCCGCTTGGAGAGCCTTTACATCA 1319
Query 1329 ATTCATGAATGCTTTCACTGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1388
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTCATGAATGCTTTCACGGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1379
Query 1389 ACTCTTGCTTGGGTGTGCGCTTCCGATTTGGATGTCATCTGGGTTCAATGACCGAGCCTT 1448
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1380 ACTCTTGCTTGGGTGTGCGCTTCCAATTTGGATGTCATCTGGGTTCAATGACCGAGCTTT 1439
Query 1449 ATCTCCATTTGCTGGAATTCTCAGCCTAGGAATTGGAGATACAATGGCATCGATGGTTGG 1508
||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1440 ATCCCCATTTGCCGGAATTCTCAGCCTCGGGATTGGAGATACAATGGCATCGATGGTTGG 1499
Query 1509 TCACAAATATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1568
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GCACAAGTATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1559
Query 1569 AGCGGGAATAACATCGATGATGGCAGTGTGCTTTGTTCTGGTCCCAATATTAGCATCAAT 1628
|||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1560 AGCGGGAATAACATCGGTGATGGCAGTGTGCTTTGTACTGGTCCCAGTATTAGCATCAAT 1619
Query 1629 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTGGCTGTGACAGCCACCGGGAT 1688
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1620 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTTGCTGTGACAGCCACCGGGAT 1679
Query 1689 GTTGGAAGCTTACACGGCGCAGTTAGACAATGCCTTTATACCTCTTGTCTTCTACTCACT 1748
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1680 GTTGGAAGCTTACACCGCACAGTTAGACAATGCCTTTATACCTCTTGTCTACTACTCACT 1739
Query 1749 CCTCTGCTTGTAAATTAGTTAAGCCTAGAGTCAACATTCTACGTTTTTTCACTTCATGTA 1808
|||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||| |||||
Sbjct 1740 CCTCTGTTTGTAG-TAAGTTAAGCCTAGAGTCATCATTCTTCGTTTTTCCACTTAATGTA 1798
Query 1809 CATAACAAAGTATCTTACTACTAACCATACTTCCTCTTGTTAATTGCCGTATCT 1862
||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1799 CATAACAAAGTATCTTACTACTAACCACACTTCCTCTTGTTAATTGCCATATCT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5