BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45040.1 Length=1900 Score E Sequences producing significant alignments: (Bits) Value Ahg484897 jgi|Araly1|484897|fgenesh2_kg.5__889__AT3G45040.1 2900 0.0 > Ahg484897 jgi|Araly1|484897|fgenesh2_kg.5__889__AT3G45040.1 Length=1853 Score = 2900 bits (1570), Expect = 0.0 Identities = 1760/1854 (95%), Gaps = 3/1854 (0%) Strand=Plus/Plus Query 10 TAAAACAACGAATCTCCGGCGAAATCATCATCTTCTCCGGCGATGAAGACGACGGCGACG 69 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 TAAAACAACAAATCTCCGGCGAAATCATCATCATCTCCGGCGATGAAGACGACGGCGACG 60 Query 70 TCGTTTGTAACGGGAGAGAGAGTTGTAGTTTTC-GTCGTGGTTTCTCGTAttctcttatc 128 ||||||||||| |||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 61 TCGTTTGTAACAGGAGAGAGAGTTGTAG-TAGCAGTCGTGGTTTCTCGTATTCTCTTATC 119 Query 129 tcttcctttatcacttatctcccatggcttctccctcttcctcctctctctctccgcctt 188 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCTCCCTCTATCACTTATCTCCCATGGCTTCTCCCTCTTCCTCCTCTCTCTCTCCGCCTT 179 Query 189 cctcgtcgagatccgcgtcgagacttctccgtttcttctctctcATTTCAGCTCCAGACG 248 |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 180 CCTCATCGAGATCCGCGCCGAGACTTCTCCGTTTCTTCTCTCTCGTTTCAGCTCCAGACG 239 Query 249 CGGTGCGTCTTCAGGGATATTACTAGGAGCTGTGACACTTCCTTCTGTTATGATATCTAA 308 ||||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 240 TGGTGCTTCTTCAGGGATATTATTAGGAGCTGTAACACTTCCTTCTGTTATGATTTCTAA 299 Query 309 GTTAGTTCAGCTTTCAAGAGCTATTTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 368 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 GTTGGTTCAGCTTTCAAGAGCTATCTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 359 Query 369 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 419 Query 429 AGTGATTATGTCACAAGTGAGAAAAGATGAATCTTTGTCGTCATCGTCTATTTGGCTTAC 488 ||||||||||||||||| |||||| | |||||||||||| || |||||| ||||||||| Sbjct 420 AGTGATTATGTCACAAGCGAGAAATGCTGAATCTTTGTCATCGTCGTCTGTTTGGCTTAT 479 Query 489 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTTTCACTTTCCAT 548 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTCTCACTTTCCAT 539 Query 549 GATTTCACACACTGGCTTGAATACGTCATTGAAAATGTTGTGGATGTTATTTCATGGACT 608 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || || Sbjct 540 GATTTCACACACTGGTTTGAATACTTCATTGAAAATGTTGTGGATGTTATTTCACGGCCT 599 Query 609 TGCAGCTGTGAAGTTGATTCGACATTTGCTTTGCACTTTCCCATCGTGTGCTTCGATAGG 668 ||||||| ||||||| |||| ||||||||||||||| ||||| || |||||||| || || Sbjct 600 TGCAGCTTTGAAGTTAATTCAACATTTGCTTTGCACCTTCCCTTCTTGTGCTTCAATCGG 659 Query 669 GGAAGCACTTCTTGTGACCAGTGGTCTTGTTCTCTATTTTGGCGACTTTTTGGCATGCAC 728 |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 660 GGAAGCGCTTCTTGTGACTAGTGGTCTTGTTCTATATTTTGGCGACTTTTTGGCATGCAC 719 Query 729 AATTGCAAAGATTTTTGAGAAATTGATACCTGTGGATCTTGTCTCAATAAGCTATGGAAT 788 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 720 AATTGCAAAGATTTTCGAGAAATTGATACCTGTAGATCTTGTCTCAATAAGCTATGGAAT 779 Query 789 AAAGAGAACGGAAACCGGCATAATCGTTCAGGGTCTACTGTTGGGCCTTCTACTTTTCCC 848 || ||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 780 AAGGAGGACTGAAACCGGCATAATCGTCCAGGGTCTGCTGTTGGGCCTTCTACTTTTCCC 839 Query 849 GATGGTGTTTAGATTTGTTCTGCATATATATGAAAGCTCTTTGAGAAAGAGAGATGCTCG 908 ||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 840 GATAGTGTTCAGAATCGTTCTGCATATATATGAAAGCTCCTTGAGAAAGAGAGATGCTCG 899 Query 909 ACAAAGAAACTGCAGTGATGCTGCAAAATCTGTCTTATTCTTTGTTTCACTTCTATTTTT 968 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 900 ACAAAGAAACTGCAGTGATACTGCAAAATCTATCTTATTCTTTGTTTCACTTCTATTTTT 959 Query 969 TATGGTCGTGGCTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCAACCAGCATCCCTT 1028 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 960 TATGATCGTGACTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCGACCAGCATCCCTT 1019 Query 1029 CTTATGGGTGCTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1088 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CTTATGGGTACTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1079 Query 1089 CTGGATTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1148 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTGGGTTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1139 Query 1149 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTCTTGCC 1208 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1140 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTTTTGCC 1199 Query 1209 AGCTCTTGTCTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCAGCATTGGCAGTATT 1268 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1200 AGCTCTTGTGTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCTGCATTGGCGGTATT 1259 Query 1269 TGTTGCATTGGAGATCATTCGAATATGGAGAATTCAGCCTCTTGGAGAGCCTTTACATCA 1328 ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1260 TGTTGTATTGGAGATCATTCGAATCTGGAGAATTCAGCCGCTTGGAGAGCCTTTACATCA 1319 Query 1329 ATTCATGAATGCTTTCACTGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1388 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 ATTCATGAATGCTTTCACGGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1379 Query 1389 ACTCTTGCTTGGGTGTGCGCTTCCGATTTGGATGTCATCTGGGTTCAATGACCGAGCCTT 1448 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1380 ACTCTTGCTTGGGTGTGCGCTTCCAATTTGGATGTCATCTGGGTTCAATGACCGAGCTTT 1439 Query 1449 ATCTCCATTTGCTGGAATTCTCAGCCTAGGAATTGGAGATACAATGGCATCGATGGTTGG 1508 ||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1440 ATCCCCATTTGCCGGAATTCTCAGCCTCGGGATTGGAGATACAATGGCATCGATGGTTGG 1499 Query 1509 TCACAAATATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1568 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GCACAAGTATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1559 Query 1569 AGCGGGAATAACATCGATGATGGCAGTGTGCTTTGTTCTGGTCCCAATATTAGCATCAAT 1628 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1560 AGCGGGAATAACATCGGTGATGGCAGTGTGCTTTGTACTGGTCCCAGTATTAGCATCAAT 1619 Query 1629 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTGGCTGTGACAGCCACCGGGAT 1688 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1620 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTTGCTGTGACAGCCACCGGGAT 1679 Query 1689 GTTGGAAGCTTACACGGCGCAGTTAGACAATGCCTTTATACCTCTTGTCTTCTACTCACT 1748 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1680 GTTGGAAGCTTACACCGCACAGTTAGACAATGCCTTTATACCTCTTGTCTACTACTCACT 1739 Query 1749 CCTCTGCTTGTAAATTAGTTAAGCCTAGAGTCAACATTCTACGTTTTTTCACTTCATGTA 1808 |||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||| ||||| Sbjct 1740 CCTCTGTTTGTAG-TAAGTTAAGCCTAGAGTCATCATTCTTCGTTTTTCCACTTAATGTA 1798 Query 1809 CATAACAAAGTATCTTACTACTAACCATACTTCCTCTTGTTAATTGCCGTATCT 1862 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1799 CATAACAAAGTATCTTACTACTAACCACACTTCCTCTTGTTAATTGCCATATCT 1852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71381119130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5