BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45050.2
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484900 jgi|Araly1|484900|fgenesh2_kg.5__892__AT3G45050.4 621 2e-177
> Ahg484900 jgi|Araly1|484900|fgenesh2_kg.5__892__AT3G45050.4
Length=778
Score = 621 bits (336), Expect = 2e-177
Identities = 553/651 (85%), Gaps = 41/651 (6%)
Strand=Plus/Plus
Query 171 GAGATCATCAACTGTTG-TTCCTGCTTTAGCTGAAACAGCTGTTTCTATAGCGATTGCAG 229
|||||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 164 GAGATCATTAACAG-TGACTCCTGCTTTAGCTGAAACAGCTGTTTCTATAGTGATTGCAG 222
Query 230 CCACGGTTGTTGGTACTGCAGCTACTATTCTTGTTA-GGAGAAATAACAAAGCCTCCGAA 288
|||||||||||||||||||||||||||| |||| | |||||| | ||||||| | |||
Sbjct 223 CCACGGTTGTTGGTACTGCAGCTACTATCCTTG-CACGGAGAAGTTCCAAAGCCGCTGAA 281
Query 289 GAAGCCGAGGCTTCTATGAAAGAATGTGAAGCTTGTCTCGGTTCAGGAATATGTCCTGAA 348
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 282 GAAGCCGAGGCTTCTATGAAAGAATGTGAAGCTTGTCTCGGTTCAGGAATCTGTCCTGAA 341
Query 349 TGCAAAGGTGAAGGATTTGTATTAAAGAAACTATCAGATGCAAATGCTGAGAAAGCAAGA 408
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 342 TGCAAAGGTGAAGGATTTGTACTAAAGAAACTATCAGATGCTAATGCTGAGAAAGCAAGA 401
Query 409 CTTGCAGCTAAAAACATGGCCACGCGATATACAGCCGGGCTTCCCAAGAAATGGAGCTAT 468
||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CTTACAGCCAAAAATATGGCCACGCGATATACAGCCGGGCTTCCCAAGAAATGGAGCTAC 461
Query 469 TGCACTAAATGTTCTTCCACGA-GATCTTGTATGATATGTGGTGGTAGTGGAAAGACAAG 527
||||| |||||||| ||||| | |||||||||| | ||||||||| ||||||||||||||
Sbjct 462 TGCACAAAATGTTCGTCCAC-ACGATCTTGTATAACATGTGGTGGGAGTGGAAAGACAAG 520
Query 528 CATCTAGCTCCTTACGCAGAGTTTACAAGTACGTTAAACTCTTTTCTTCAGAAACCGATT 587
|||||||| |||||||||| || |||||||| ||| ||||| | | || | | ||
Sbjct 521 CATCTAGCACCTTACGCAGGGTACACAAGTAC---AAATTCTTTAATGC-GATAT-GTTT 575
Query 588 CAAAGATTCTTTAATGTGATCTGTTTCTGAGACGTAAAGATTACTAAAGTC-AATTGCTT 646
| ||| | | || | || | || | | || || || || || || | ||
Sbjct 576 CTTAGA--CGTAAA-G--AT-TA---CTAA-A-GTCAAT-TT-CTTCT-TCTAAAGGTTT 621
Query 647 CTTCTTAAGGTATGACTAGTTGTGCCTCAAAACACTCTTCTCATTTTCAGTATTTGATCG 706
|||| | | || ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 622 CTTCAT--G-TA-GACTAGTTGCGCCTCAAAACACTCGTCTCATTTTCAGTATTTGATCG 677
Query 707 ATTT-TGTTAAATCAATAATATGATCTTGGAAGACTTTTAAAGACACGGCTTGTTGATAA 765
|||| | |||||| | |||||||||||||||||||||||||| | ||||||||
Sbjct 678 ATTTCT-TTAAATTAGTAATATGATCTTGGAAGACTTTTAAA--------T-GTTGATAA 727
Query 766 AACAGAGAGAAAACTGATGCATAAGTCTTATATCAAACGACATTGTACATC 816
||||||||||||| ||||||||||| ||||||||||||| |||| ||||||
Sbjct 728 AACAGAGAGAAAATTGATGCATAAGCCTTATATCAAACGGCATTTTACATC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5