BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45060.1 Length=1835 Score E Sequences producing significant alignments: (Bits) Value Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 2828 0.0 Ahg937163 jgi|Araly1|937163|scaffold_501354.1 1155 0.0 > Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 Length=1827 Score = 2828 bits (1531), Expect = 0.0 Identities = 1737/1837 (95%), Gaps = 12/1837 (1%) Strand=Plus/Plus Query 1 CAAAGGCCACAAAGAAGAAGAAAACCTTCTTCAACGTTTAAAGtctcttctctctctctc 60 ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| Sbjct 1 CAAAGGCGACAAAGAAGAAGAAAACCTTCTTCATTGTTTAAAG-------TCTCT-TCTC 52 Query 61 tctTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 TCTTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 112 Query 121 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 172 Query 181 TCCGTCCAAGAAGATG-TCCCTTCATCTCAAGCCGTCCGAACAAACGATCCAACGGCTAA 239 |||||||| ||||||| ||| ||| ||||||||||||||| || |||||||||||||||| Sbjct 173 TCCGTCCACGAAGATGGTCC-TTCGTCTCAAGCCGTCCGATCAGACGATCCAACGGCTAA 231 Query 240 GTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACTATCATTCGC 299 ||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 232 GTTCGCCTTACCAGTGGACTCCGAGCATAGGGCAAAAGTGTTCAAACCATTATCATTCGC 291 Query 300 TAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 359 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AAAACCACACATGAGAGCTTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 351 Query 360 CACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTCGCGACAATCTCGACCTGACCAAAAC 419 |||||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||||| Sbjct 352 CACCTTCGCAGCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC 411 Query 420 CGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGAGACTCGCTAT 479 ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 412 CGACATCGGAAATGCCGGAGTAGCATCAGTTTCCGGCGCCATTTTCTCAAGACTAGCTAT 471 Query 480 GGGTGCTGTATGTGACCTTCTAGGGGCACGTTATGGAACCGCCTTCTCACTTATGCTTAC 539 |||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 472 GGGTGCCGTATGTGACCTTCTAGGAGCACGTTATGGGACCGCTTTCTCTCTTATGCTTAC 531 Query 540 AGCTCCAGCAGTTTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGCTACTTAGCCGTAAG 599 ||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || | Sbjct 532 AGCTCCAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCG 591 Query 600 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTATCATGTCAGTACTGGACGAGTGTTAT 659 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 592 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTAT 651 Query 660 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGATATGGG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 652 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGACATGGG 711 Query 720 AGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCATCAAACTCACCGGAGC 779 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 712 AGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATCAAACTCACCGGAGC 771 Query 780 CACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGAT-AGTTA 838 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| Sbjct 772 CACTCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGATCA-TTA 830 Query 839 TGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGTAACCTCAGTACTCTCC 898 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 831 TGGGTATTCTCGTTCTCACTCTAGGCCAAGATCTTCCCGATGGTAACCTTAGTACTCTCC 890 Query 899 AAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 958 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 891 AAAAGAGTGGTCAAGTTTCCAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 950 Query 959 ACTATAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1018 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 951 ACTACAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1010 Query 1019 TCAACAACGTTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCTG 1078 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1011 TCAACAACATTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCCG 1070 Query 1079 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTTTTGGTGGCTACG 1138 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1071 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCTTTGGTGGCTATG 1130 Query 1139 CTTCAGATGTAGCTGCACGGCTCTTCGGTATGAGGGGACGGTTATGGATCTTGTGGATCT 1198 | ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 1131 CCTCAGACGTAGCTGCACGGCTCTTCGGCATGAGAGGCCGGTTATGGATCTTGTGGATCT 1190 Query 1199 TACAAACTGTTGGAGCTCTCTTTTGCATCTGGCTTGGTCGTGCTAGTTCACTACCTATAG 1258 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1191 TACAAACTGTTGGAGCTCTCTTTGGCATCTGGCTTGGTCGTGCTAGTTCACTCCCTATAG 1250 Query 1259 CTATCTTAGCCATGATGCTTTTTTCCATGGGCACACAAGCTGCTTGTGGAGCTCTCTTTG 1318 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 1251 CTATCTTAGCCATGATGCTCTTTTCCATCGGCACACAAGCGGCTTGTGGAGCTCTCTTTG 1310 Query 1319 GTGTTGCTCCTTTTGTTTCCCGCCGTTCTCTTGGACTTATCTCGGGATTAACTGGTGCTG 1378 ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 1311 GTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTTGGGCTTATCTCTGGATTGACTGGTGCTG 1370 Query 1379 GTGGAAATTTTGGGTCGGGAGTTACTCAACTTCTTTTCTTCTCTTCCTCGAGGTTTAGTA 1438 | ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 1371 GAGGAAATTTTGGGTCGGGTGTTACTCAACTTCTTTTCTTCTCCTCGTCGAGGTTTAGTA 1430 Query 1439 CGGCGGAAGGACTATCGTTGATGGGCGTTATGGCTGTTGTGTGCTCTCTTCCGGTTGCGT 1498 | || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1431 CAGCTGAAGGACTATCATTGATGGGTGTTATGGCTGTTGTGTGTTCCCTTCCGGTTGCGT 1490 Query 1499 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCACAAGATGGAGAGAAAT 1558 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1491 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCGCAAGACGGAGAGAAAT 1550 Query 1559 CAAAGGAAGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGACTAC 1618 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1551 CAAAGGAGGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGGCTAC 1610 Query 1619 ACGAAGGAAGCATTAAATTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1678 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 ACGAGGGAAGCATTAAGTTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1670 Query 1679 TGGCTGATATTCCAACGCCGGAAACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1738 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1671 TGGCTGATATTCCAACACCGGAGACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1730 Query 1739 CATTACATCTTTTTCCACATATAAATAACCCTCAAACTTAGCTTTATGTTTGCATGTTTT 1798 |||||||| ||||||||||||||||||||| |||||||||||||||| ||| | |||||| Sbjct 1731 CATTACATATTTTTCCACATATAAATAACCATCAAACTTAGCTTTATATTTCCTTGTTTT 1790 Query 1799 ATGTTCCTCTTATGAGAGATGTACCGAGTAAGATCCT 1835 ||||||||||||||| ||||||||||||| ||||||| Sbjct 1791 ATGTTCCTCTTATGAAAGATGTACCGAGTTAGATCCT 1827 > Ahg937163 jgi|Araly1|937163|scaffold_501354.1 Length=1669 Score = 1155 bits (625), Expect = 0.0 Identities = 1325/1654 (80%), Gaps = 83/1654 (5%) Strand=Plus/Plus Query 116 ATGAAGACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCT 175 |||| || ||||||||||| |||||| |||||||||| ||||| ||||| |||||||||| Sbjct 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96 Query 176 CCTTCTCCGTCCA-AG-AA-GAT-GTCC-CTTCATCTCAAGCCGTCCGAACAAACGATCC 230 ||||||| ||| | | || | | | || || || ||||| ||||||| | | ||||| Sbjct 97 CCTTCTCTGTCGACGGCAATGCTAG-CCATTTGAT-TCAAGTCGTCCGATCGGATGATCC 154 Query 231 AACGGCTAAGTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACT 290 ||||||||||||| || | || || ||||| |||||||| |||||||||||||||||| | Sbjct 155 AACGGCTAAGTTTTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCATT 214 Query 291 ATCATTCGCTAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTG 350 |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||| Sbjct 215 TTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTTG 274 Query 351 CTTCATCTCCACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTC-GCGACAATCTCGACC 409 ||||||||| || || || ||||||||||| || ||| ||| || | || || ||||| Sbjct 275 CTTCATCTCTACTTTTGCCGCCGCACCTCTCGTTCCCATCA-TCAGAGATAACCTCGATT 333 Query 410 TGACCAAAACCGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGA 469 ||||||||| || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 334 TGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCTA 393 Query 470 GACTCGCTATGGGTGCTGTATGTGACCTT-CTAGGGGC-ACGTTATGGAACCGCCTTCTC 527 | ||||||||||| ||||| ||||| ||| || ||||| | | || ||||| || || | Sbjct 394 GGCTCGCTATGGGAGCTGTTTGTGA-CTTGCTCGGGGCTA-GGTACGGAACGGCGTTTTT 451 Query 528 ACTTATGCTTA-CAGCTCCAGCAGT-TTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGC 585 || ||| ||| |||||||| |||| ||| |||||| || || ||| |||| || || Sbjct 452 GCTGATG-TTATCAGCTCCAACAGTGTTT-AGCATGTCCTTTGTGGCTAACGCTGGTGGC 509 Query 586 TACTTAGCCGTAAGGTTCATGATCGGTTTTTGCT-TAGCAACGTTCGTATCATGTCAGTA 644 ||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||| || Sbjct 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTG-TCTAGCAACGTTCGTGTCATGTCAATA 568 Query 645 CTGGACGAGTGTTATGTTC-ACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAG 703 ||||| || || |||||| || || ||||| |||||||| || ||||||||||| |||| Sbjct 569 TTGGACAAGCGTGATGTTCAAC-GGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAG 627 Query 704 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCA 763 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 628 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCA 687 Query 764 TCAAACTCACCGGAGCCACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCA 823 |||||||| ||||||||| |||||| ||| |||||| ||||||||||| ||||||| Sbjct 688 TCAAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGT 747 Query 824 TTCTTCAGAT-AGTTATGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGT 882 |||| ||| | | ||||||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 748 TTCTACAGGTCA-TTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGA 806 Query 883 AACCTCAGTACTCTCCAAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTT 942 ||||| |||||||| || |||| || | ||||| |||||||| ||||||||||| ||| Sbjct 807 AACCTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT 866 Query 943 TGGT-TCGCTGTGAAAAACTATAGAAC--ATGGATCTTATTCATGCTCTATGGATTTTCT 999 |||| | ||||||| ||||||||||| ||| | || ||| | |||||||||||||| Sbjct 867 TGGTAT-GCTGTGATGAACTATAGAACGTATG--TGTTGTTCCTTCTCTATGGATTTTCC 923 Query 1000 ATGGGAGTTGAATTAACGATCAACAACGTTATATCTG-GATACTTCTACGATAGGTTT-A 1057 |||||| | ||| | || |||||||| ||||| || | | || |||| ||| |||||| | Sbjct 924 ATGGGAATCGAAATGACCATCAACAATGTTATCTCAGAG-TATTTCTTCGACAGGTTTCA 982 Query 1058 ACCTT-ACGCTTCACACAGCTGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTT 1116 || || | ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 983 AC-TTCAA-CTTCACACAGCTGGTATGATAGCAGCCAGCTTTGGTATGGCTAACTTCTTC 1040 Query 1117 GCCCGTCCTTTTGGTGGCTACGCTTCAGA--TGTAGCTGCACGGCTCTTCGGTATGAG-G 1173 || ||||| |||||||||| || || || ||| |||| ||| | ||||||||||| | Sbjct 1041 GCTCGTCCCCTTGGTGGCTATGCATCTGACATGT--CTGCTCGGTTTTTCGGTATGAGAG 1098 Query 1174 GGACGGTTATGGATC-TTGTGGATCTTACAAACTGT-TGGAGCTCTCTTT-TGCATCTGG 1230 || |||||||||| | || ||||| ||||||||| | ||| | || ||| || | ||| Sbjct 1099 GG-CGGTTATGGACCCTT-TGGATTTTACAAACT-TCTGGTGGACT-TTTCTGTGTTTGG 1154 Query 1231 CTTGGTCGTGCTAGTTCACTACCTATAGCTATCTTAGCCATGATGCTTTTTTCCA-TGGG 1289 || || ||||||| |||||| ||||||||||| |||||||||||||| || || | | || Sbjct 1155 CTAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTC-AGTTGG 1213 Query 1290 CACACAAGCTGCTTGTGGAGCTCTCTTTGGTGTTGCTCCTTTTGTTTCCCGCCGTTCTCT 1349 | |||||||||||||||||| |||| || | | ||||||||| || ||||| || || Sbjct 1214 CGTGCAAGCTGCTTGTGGAGCTATCTTCGGCATCGTTCCTTTTGTCTCGCGCCGCTC-CT 1272 Query 1350 T-GGACTTATCTCGGGA-TTAACTGGTGCTGGTGGAAATTTTGGGTCGGGAGTTACTCAA 1407 | || || || || ||| ||| | ||||| || ||||||||||| |||||| | |||||| Sbjct 1273 TAGGGCTAATATCAGGACTTACC-GGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAA 1331 Query 1408 CTTCTTTTCTTCTCTTCCTCGAGGTTT-AGTACGGCGGAAGGACTA-TCGTTGATGGGCG 1465 || |||| ||||||||||| || || | || || || || || ||| ||||||| Sbjct 1332 CTGATTTTTTTCTCTTCCTCAAGATTCCAC-ACTGCCGATGG-CTTGTCGCTGATGGGAA 1389 Query 1466 TTATGGC--TG-TTGTGTGCTCTCTTCCGGTTGCGTTTATACATTTTCCGCAGTGGGGAA 1522 | ||||| || || | | | || || |||||||||||||||||||||||| ||||||| Sbjct 1390 TCATGGCGATGGTTTT-TACGCTTTT--GGTTGCGTTTATACATTTTCCGCAATGGGGAA 1446 Query 1523 GCATGTTCTTGAGG-CCATCACAAGATG--GAGA-GAAA-TCAAAGGAAGAGCATTACTA 1577 | ||||| || || ||| ||||| || |||| |||| | | |||||||||||| || Sbjct 1447 GTATGTTTTTT-GGACCA--ACAAG-TGACGAGAAGAAAGT-ATTGGAAGAGCATTATTA 1501 Query 1578 TGGAGCGGAATGGACAGAGGAAGAGAAGAG-CTTAGGACTACACGAAGGAAGCATTAAAT 1636 | ||| || ||||| |||||||||||| | | |||| | || ||||| ||| |||||| Sbjct 1502 CGCAGCCGAGTGGACTGAGGAAGAGAAGCGGCA-AGGATTGCATGAAGGTAGCCTTAAAT 1560 Query 1637 TTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGA-TGTTGG-CTGATAT-TCCAA 1693 |||| || || || || ||||| |||||||| |||||| ||| || | | | |||| Sbjct 1561 TTGCAGAGAATAGTCGATCAGAAAGAGGCCGAAAGGCGGCTGT-GGACGG-TGCCTCCA- 1617 Query 1694 CGCCGGAAAC-CGGATCTCCGGCTCATGTCTAGT 1726 |||| |||| || | | ||||||||||| |||| Sbjct 1618 CGCCAGAAAATCGAACC-CCGGCTCATGTTTAGT 1650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68905253205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5