BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45060.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1 2828 0.0
Ahg937163 jgi|Araly1|937163|scaffold_501354.1 1155 0.0
> Ahg484901 jgi|Araly1|484901|fgenesh2_kg.5__893__AT3G45060.1
Length=1827
Score = 2828 bits (1531), Expect = 0.0
Identities = 1737/1837 (95%), Gaps = 12/1837 (1%)
Strand=Plus/Plus
Query 1 CAAAGGCCACAAAGAAGAAGAAAACCTTCTTCAACGTTTAAAGtctcttctctctctctc 60
||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1 CAAAGGCGACAAAGAAGAAGAAAACCTTCTTCATTGTTTAAAG-------TCTCT-TCTC 52
Query 61 tctTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 TCTTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 112
Query 121 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 172
Query 181 TCCGTCCAAGAAGATG-TCCCTTCATCTCAAGCCGTCCGAACAAACGATCCAACGGCTAA 239
|||||||| ||||||| ||| ||| ||||||||||||||| || ||||||||||||||||
Sbjct 173 TCCGTCCACGAAGATGGTCC-TTCGTCTCAAGCCGTCCGATCAGACGATCCAACGGCTAA 231
Query 240 GTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACTATCATTCGC 299
||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 232 GTTCGCCTTACCAGTGGACTCCGAGCATAGGGCAAAAGTGTTCAAACCATTATCATTCGC 291
Query 300 TAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 359
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAAACCACACATGAGAGCTTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 351
Query 360 CACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTCGCGACAATCTCGACCTGACCAAAAC 419
|||||||||||| ||||||||||||||||| || |||||||| ||| |||||||||||||
Sbjct 352 CACCTTCGCAGCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC 411
Query 420 CGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGAGACTCGCTAT 479
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 412 CGACATCGGAAATGCCGGAGTAGCATCAGTTTCCGGCGCCATTTTCTCAAGACTAGCTAT 471
Query 480 GGGTGCTGTATGTGACCTTCTAGGGGCACGTTATGGAACCGCCTTCTCACTTATGCTTAC 539
|||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 472 GGGTGCCGTATGTGACCTTCTAGGAGCACGTTATGGGACCGCTTTCTCTCTTATGCTTAC 531
Query 540 AGCTCCAGCAGTTTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGCTACTTAGCCGTAAG 599
||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || |
Sbjct 532 AGCTCCAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCG 591
Query 600 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTATCATGTCAGTACTGGACGAGTGTTAT 659
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 592 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTAT 651
Query 660 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGATATGGG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGACATGGG 711
Query 720 AGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCATCAAACTCACCGGAGC 779
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 712 AGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATCAAACTCACCGGAGC 771
Query 780 CACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGAT-AGTTA 838
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 772 CACTCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGATCA-TTA 830
Query 839 TGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGTAACCTCAGTACTCTCC 898
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 831 TGGGTATTCTCGTTCTCACTCTAGGCCAAGATCTTCCCGATGGTAACCTTAGTACTCTCC 890
Query 899 AAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 958
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AAAAGAGTGGTCAAGTTTCCAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 950
Query 959 ACTATAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ACTACAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1010
Query 1019 TCAACAACGTTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCTG 1078
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1011 TCAACAACATTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCCG 1070
Query 1079 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTTTTGGTGGCTACG 1138
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1071 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCTTTGGTGGCTATG 1130
Query 1139 CTTCAGATGTAGCTGCACGGCTCTTCGGTATGAGGGGACGGTTATGGATCTTGTGGATCT 1198
| ||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1131 CCTCAGACGTAGCTGCACGGCTCTTCGGCATGAGAGGCCGGTTATGGATCTTGTGGATCT 1190
Query 1199 TACAAACTGTTGGAGCTCTCTTTTGCATCTGGCTTGGTCGTGCTAGTTCACTACCTATAG 1258
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1191 TACAAACTGTTGGAGCTCTCTTTGGCATCTGGCTTGGTCGTGCTAGTTCACTCCCTATAG 1250
Query 1259 CTATCTTAGCCATGATGCTTTTTTCCATGGGCACACAAGCTGCTTGTGGAGCTCTCTTTG 1318
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 1251 CTATCTTAGCCATGATGCTCTTTTCCATCGGCACACAAGCGGCTTGTGGAGCTCTCTTTG 1310
Query 1319 GTGTTGCTCCTTTTGTTTCCCGCCGTTCTCTTGGACTTATCTCGGGATTAACTGGTGCTG 1378
||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1311 GTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTTGGGCTTATCTCTGGATTGACTGGTGCTG 1370
Query 1379 GTGGAAATTTTGGGTCGGGAGTTACTCAACTTCTTTTCTTCTCTTCCTCGAGGTTTAGTA 1438
| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1371 GAGGAAATTTTGGGTCGGGTGTTACTCAACTTCTTTTCTTCTCCTCGTCGAGGTTTAGTA 1430
Query 1439 CGGCGGAAGGACTATCGTTGATGGGCGTTATGGCTGTTGTGTGCTCTCTTCCGGTTGCGT 1498
| || ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1431 CAGCTGAAGGACTATCATTGATGGGTGTTATGGCTGTTGTGTGTTCCCTTCCGGTTGCGT 1490
Query 1499 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCACAAGATGGAGAGAAAT 1558
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1491 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCGCAAGACGGAGAGAAAT 1550
Query 1559 CAAAGGAAGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGACTAC 1618
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1551 CAAAGGAGGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGGCTAC 1610
Query 1619 ACGAAGGAAGCATTAAATTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1678
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ACGAGGGAAGCATTAAGTTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1670
Query 1679 TGGCTGATATTCCAACGCCGGAAACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1738
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGGCTGATATTCCAACACCGGAGACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1730
Query 1739 CATTACATCTTTTTCCACATATAAATAACCCTCAAACTTAGCTTTATGTTTGCATGTTTT 1798
|||||||| ||||||||||||||||||||| |||||||||||||||| ||| | ||||||
Sbjct 1731 CATTACATATTTTTCCACATATAAATAACCATCAAACTTAGCTTTATATTTCCTTGTTTT 1790
Query 1799 ATGTTCCTCTTATGAGAGATGTACCGAGTAAGATCCT 1835
||||||||||||||| ||||||||||||| |||||||
Sbjct 1791 ATGTTCCTCTTATGAAAGATGTACCGAGTTAGATCCT 1827
> Ahg937163 jgi|Araly1|937163|scaffold_501354.1
Length=1669
Score = 1155 bits (625), Expect = 0.0
Identities = 1325/1654 (80%), Gaps = 83/1654 (5%)
Strand=Plus/Plus
Query 116 ATGAAGACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCT 175
|||| || ||||||||||| |||||| |||||||||| ||||| ||||| ||||||||||
Sbjct 37 ATGATGAAGGCTCTATTGGGACCTCCATGCATGGAGTTACGGCGAGGGAACAAGTCTTCT 96
Query 176 CCTTCTCCGTCCA-AG-AA-GAT-GTCC-CTTCATCTCAAGCCGTCCGAACAAACGATCC 230
||||||| ||| | | || | | | || || || ||||| ||||||| | | |||||
Sbjct 97 CCTTCTCTGTCGACGGCAATGCTAG-CCATTTGAT-TCAAGTCGTCCGATCGGATGATCC 154
Query 231 AACGGCTAAGTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACT 290
||||||||||||| || | || || ||||| |||||||| |||||||||||||||||| |
Sbjct 155 AACGGCTAAGTTTTCCTTGCCGGTTGACTCAGAACATAGAGCAAAAGTGTTCAAACCATT 214
Query 291 ATCATTCGCTAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTG 350
|||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 215 TTCATTCGCCAAACCACACATGAGAGCTTTTCACTTAGGATGGATTTCTTTCTTCACTTG 274
Query 351 CTTCATCTCCACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTC-GCGACAATCTCGACC 409
||||||||| || || || ||||||||||| || ||| ||| || | || || |||||
Sbjct 275 CTTCATCTCTACTTTTGCCGCCGCACCTCTCGTTCCCATCA-TCAGAGATAACCTCGATT 333
Query 410 TGACCAAAACCGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGA 469
||||||||| || || ||||| || ||||| || || ||||||||||| |||||||| |
Sbjct 334 TGACCAAAAATGATATTGGAAACGCCGGAGTCGCCTCGGTTTCCGGCGCTATTTTCTCTA 393
Query 470 GACTCGCTATGGGTGCTGTATGTGACCTT-CTAGGGGC-ACGTTATGGAACCGCCTTCTC 527
| ||||||||||| ||||| ||||| ||| || ||||| | | || ||||| || || |
Sbjct 394 GGCTCGCTATGGGAGCTGTTTGTGA-CTTGCTCGGGGCTA-GGTACGGAACGGCGTTTTT 451
Query 528 ACTTATGCTTA-CAGCTCCAGCAGT-TTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGC 585
|| ||| ||| |||||||| |||| ||| |||||| || || ||| |||| || ||
Sbjct 452 GCTGATG-TTATCAGCTCCAACAGTGTTT-AGCATGTCCTTTGTGGCTAACGCTGGTGGC 509
Query 586 TACTTAGCCGTAAGGTTCATGATCGGTTTTTGCT-TAGCAACGTTCGTATCATGTCAGTA 644
||||||||||| |||||||||| |||||||| | ||||||||||||| |||||||| ||
Sbjct 510 TACTTAGCCGTCCGGTTCATGATTGGTTTTTG-TCTAGCAACGTTCGTGTCATGTCAATA 568
Query 645 CTGGACGAGTGTTATGTTC-ACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAG 703
||||| || || |||||| || || ||||| |||||||| || ||||||||||| ||||
Sbjct 569 TTGGACAAGCGTGATGTTCAAC-GGCAAGATAATCGGACTTGTCAACGGATGTGCCGGAG 627
Query 704 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCA 763
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 628 GGTGGGGAGATATGGGAGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCA 687
Query 764 TCAAACTCACCGGAGCCACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCA 823
|||||||| ||||||||| |||||| ||| |||||| ||||||||||| |||||||
Sbjct 688 TCAAACTCGCCGGAGCCAGTCCCTTTGTGGCGTGGAGGATCGCCTTCTTCGTCCCCGGGT 747
Query 824 TTCTTCAGAT-AGTTATGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGT 882
|||| ||| | | ||||||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 748 TTCTACAGGTCA-TTATGGGCATTCTTGTGCTCACTCTTGGACAAGATCTTCCTGATGGA 806
Query 883 AACCTCAGTACTCTCCAAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTT 942
||||| |||||||| || |||| || | ||||| |||||||| ||||||||||| |||
Sbjct 807 AACCTTAGTACTCTACAGAAGAAAGGAGATGTTTCCAAAGACAAGTTCTCCAAGGTATTT 866
Query 943 TGGT-TCGCTGTGAAAAACTATAGAAC--ATGGATCTTATTCATGCTCTATGGATTTTCT 999
|||| | ||||||| ||||||||||| ||| | || ||| | ||||||||||||||
Sbjct 867 TGGTAT-GCTGTGATGAACTATAGAACGTATG--TGTTGTTCCTTCTCTATGGATTTTCC 923
Query 1000 ATGGGAGTTGAATTAACGATCAACAACGTTATATCTG-GATACTTCTACGATAGGTTT-A 1057
|||||| | ||| | || |||||||| ||||| || | | || |||| ||| |||||| |
Sbjct 924 ATGGGAATCGAAATGACCATCAACAATGTTATCTCAGAG-TATTTCTTCGACAGGTTTCA 982
Query 1058 ACCTT-ACGCTTCACACAGCTGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTT 1116
|| || | ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 983 AC-TTCAA-CTTCACACAGCTGGTATGATAGCAGCCAGCTTTGGTATGGCTAACTTCTTC 1040
Query 1117 GCCCGTCCTTTTGGTGGCTACGCTTCAGA--TGTAGCTGCACGGCTCTTCGGTATGAG-G 1173
|| ||||| |||||||||| || || || ||| |||| ||| | ||||||||||| |
Sbjct 1041 GCTCGTCCCCTTGGTGGCTATGCATCTGACATGT--CTGCTCGGTTTTTCGGTATGAGAG 1098
Query 1174 GGACGGTTATGGATC-TTGTGGATCTTACAAACTGT-TGGAGCTCTCTTT-TGCATCTGG 1230
|| |||||||||| | || ||||| ||||||||| | ||| | || ||| || | |||
Sbjct 1099 GG-CGGTTATGGACCCTT-TGGATTTTACAAACT-TCTGGTGGACT-TTTCTGTGTTTGG 1154
Query 1231 CTTGGTCGTGCTAGTTCACTACCTATAGCTATCTTAGCCATGATGCTTTTTTCCA-TGGG 1289
|| || ||||||| |||||| ||||||||||| |||||||||||||| || || | | ||
Sbjct 1155 CTAGGCCGTGCTACTTCACTTCCTATAGCTATTTTAGCCATGATGCTCTTCTC-AGTTGG 1213
Query 1290 CACACAAGCTGCTTGTGGAGCTCTCTTTGGTGTTGCTCCTTTTGTTTCCCGCCGTTCTCT 1349
| |||||||||||||||||| |||| || | | ||||||||| || ||||| || ||
Sbjct 1214 CGTGCAAGCTGCTTGTGGAGCTATCTTCGGCATCGTTCCTTTTGTCTCGCGCCGCTC-CT 1272
Query 1350 T-GGACTTATCTCGGGA-TTAACTGGTGCTGGTGGAAATTTTGGGTCGGGAGTTACTCAA 1407
| || || || || ||| ||| | ||||| || ||||||||||| |||||| | ||||||
Sbjct 1273 TAGGGCTAATATCAGGACTTACC-GGTGCAGGAGGAAATTTTGGATCGGGACTAACTCAA 1331
Query 1408 CTTCTTTTCTTCTCTTCCTCGAGGTTT-AGTACGGCGGAAGGACTA-TCGTTGATGGGCG 1465
|| |||| ||||||||||| || || | || || || || || ||| |||||||
Sbjct 1332 CTGATTTTTTTCTCTTCCTCAAGATTCCAC-ACTGCCGATGG-CTTGTCGCTGATGGGAA 1389
Query 1466 TTATGGC--TG-TTGTGTGCTCTCTTCCGGTTGCGTTTATACATTTTCCGCAGTGGGGAA 1522
| ||||| || || | | | || || |||||||||||||||||||||||| |||||||
Sbjct 1390 TCATGGCGATGGTTTT-TACGCTTTT--GGTTGCGTTTATACATTTTCCGCAATGGGGAA 1446
Query 1523 GCATGTTCTTGAGG-CCATCACAAGATG--GAGA-GAAA-TCAAAGGAAGAGCATTACTA 1577
| ||||| || || ||| ||||| || |||| |||| | | |||||||||||| ||
Sbjct 1447 GTATGTTTTTT-GGACCA--ACAAG-TGACGAGAAGAAAGT-ATTGGAAGAGCATTATTA 1501
Query 1578 TGGAGCGGAATGGACAGAGGAAGAGAAGAG-CTTAGGACTACACGAAGGAAGCATTAAAT 1636
| ||| || ||||| |||||||||||| | | |||| | || ||||| ||| ||||||
Sbjct 1502 CGCAGCCGAGTGGACTGAGGAAGAGAAGCGGCA-AGGATTGCATGAAGGTAGCCTTAAAT 1560
Query 1637 TTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGA-TGTTGG-CTGATAT-TCCAA 1693
|||| || || || || ||||| |||||||| |||||| ||| || | | | ||||
Sbjct 1561 TTGCAGAGAATAGTCGATCAGAAAGAGGCCGAAAGGCGGCTGT-GGACGG-TGCCTCCA- 1617
Query 1694 CGCCGGAAAC-CGGATCTCCGGCTCATGTCTAGT 1726
|||| |||| || | | ||||||||||| ||||
Sbjct 1618 CGCCAGAAAATCGAACC-CCGGCTCATGTTTAGT 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5