BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45080.1 Length=999 Score E Sequences producing significant alignments: (Bits) Value Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1 1098 0.0 > Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1 Length=765 Score = 1098 bits (594), Expect = 0.0 Identities = 711/767 (93%), Gaps = 10/767 (1%) Strand=Plus/Plus Query 9 ATGGATGAGAAAAAGATTACGATGAACGTGAGAAACGATGAGTTAAGCGAAGAATCAAAA 68 |||||||||||||||||| |||||||||| |||||||| || |||||||||||| |||| Sbjct 1 ATGGATGAGAAAAAGATTGCGATGAACGTTAGAAACGAAGACTTAAGCGAAGAAACAAAG 60 Query 69 ACTCTAATCTCTTCACTTCCTTCAGACAAAAATTCCACTGGG-GTAAATGTTTGTAAGTA 127 |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 61 ACTCTAATCTCTTCACTTCCTTCAGACAAAGATTCCACTGGGAG-AAATGTTTGTAAGTA 119 Query 128 CCAAGGATGTTGGTATACTCCGCC-TATTCTCCAAGGTGTCCTCAATTTCCAGAAAAACT 186 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||| Sbjct 120 CCAAGGATGTTGGTATACTCC-CCATATTCTCCAAGCTGTCCTCAATTTCCAGAAGAACT 178 Query 187 TTAAGCCTCAAGACACCGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACCACTTGGC 246 | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 179 TCAAGCCTCAAGACACTGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACTTGGC 238 Query 247 TCAAGGCGCTTACATTCGCACTCGTTCGTAGATCGAAGCACCCTTCTCATGATGATCATC 306 |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 239 TCAAGGCGCTTACATTCGCAGTCGTTTGTAGATCGAAACACCCTTCTCATGATGATCATC 298 Query 307 ATCCACTTCTTTCTGATAATCCACACGTTCTT-TCACCCTCCCTTGAGATGTATCTCTAT 365 |||| ||||||||||||||||||||||||||| | ||||| |||||||||| |||||||| Sbjct 299 ATCCTCTTCTTTCTGATAATCCACACGTTCTTGT-ACCCTACCTTGAGATGAATCTCTAT 357 Query 366 CTA-TGTAGCGAAAATCCCGACCTTACCAAGTTCTCATCATCTTCGAGGCTGTTTTCGAC 424 || | ||||| ||| || ||| |||||||||||||||||||| ||||||||||||| || Sbjct 358 -TACTATAGCGCAAAGCCGGACTTTACCAAGTTCTCATCATCTCCGAGGCTGTTTTCAAC 416 Query 425 ACACATGCCGTCACATACATTGCAAGAAGGTCTCAAAGGTTCTACTTGTAAAATTGTGTA 484 ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| Sbjct 417 ACACATGCCGTCACATATGTTGCAAGAAGGTCTCAAAGATTCTACTTGTAAATTTGTGTA 476 Query 485 TATGTCTAGAAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 544 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TATGTCCAGGAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 536 Query 545 AACCGATGATAACATAATAAGCAGTGTCGAGGATACATTTGAGATGTTTTGTAGGGGAGT 604 ||||||||||||| | ||||| || |||||||||| ||||||||||||||||||||||| Sbjct 537 AACCGATGATAACGTTTTAAGCGGTTTCGAGGATACGTTTGAGATGTTTTGTAGGGGAGT 596 Query 605 CAAC-TTTTTCGGGCCTTTTTGGGACCATGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 663 || | ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 597 CACCATTTTT-GGACCTTTTTGGGACCAAGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 655 Query 664 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGAAGAACCTCGTGAGCAGA 723 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 656 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGCAGAACCTCGTGAGCAGA 715 Query 724 TCAAGAGACTAGCCGAATTCTTAGGATGTCTTTTTACTAAGGAAGAA 770 |||||||||| || || |||||||| |||| |||||||||||||||| Sbjct 716 TCAAGAGACTTGCAGAGTTCTTAGGTTGTCCTTTTACTAAGGAAGAA 762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37131721158 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5