BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45080.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1 1098 0.0
> Ahg484902 jgi|Araly1|484902|fgenesh2_kg.5__894__AT3G45070.1
Length=765
Score = 1098 bits (594), Expect = 0.0
Identities = 711/767 (93%), Gaps = 10/767 (1%)
Strand=Plus/Plus
Query 9 ATGGATGAGAAAAAGATTACGATGAACGTGAGAAACGATGAGTTAAGCGAAGAATCAAAA 68
|||||||||||||||||| |||||||||| |||||||| || |||||||||||| ||||
Sbjct 1 ATGGATGAGAAAAAGATTGCGATGAACGTTAGAAACGAAGACTTAAGCGAAGAAACAAAG 60
Query 69 ACTCTAATCTCTTCACTTCCTTCAGACAAAAATTCCACTGGG-GTAAATGTTTGTAAGTA 127
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 61 ACTCTAATCTCTTCACTTCCTTCAGACAAAGATTCCACTGGGAG-AAATGTTTGTAAGTA 119
Query 128 CCAAGGATGTTGGTATACTCCGCC-TATTCTCCAAGGTGTCCTCAATTTCCAGAAAAACT 186
||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||
Sbjct 120 CCAAGGATGTTGGTATACTCC-CCATATTCTCCAAGCTGTCCTCAATTTCCAGAAGAACT 178
Query 187 TTAAGCCTCAAGACACCGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACCACTTGGC 246
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCAAGCCTCAAGACACTGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACTTGGC 238
Query 247 TCAAGGCGCTTACATTCGCACTCGTTCGTAGATCGAAGCACCCTTCTCATGATGATCATC 306
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 239 TCAAGGCGCTTACATTCGCAGTCGTTTGTAGATCGAAACACCCTTCTCATGATGATCATC 298
Query 307 ATCCACTTCTTTCTGATAATCCACACGTTCTT-TCACCCTCCCTTGAGATGTATCTCTAT 365
|||| ||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||
Sbjct 299 ATCCTCTTCTTTCTGATAATCCACACGTTCTTGT-ACCCTACCTTGAGATGAATCTCTAT 357
Query 366 CTA-TGTAGCGAAAATCCCGACCTTACCAAGTTCTCATCATCTTCGAGGCTGTTTTCGAC 424
|| | ||||| ||| || ||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 358 -TACTATAGCGCAAAGCCGGACTTTACCAAGTTCTCATCATCTCCGAGGCTGTTTTCAAC 416
Query 425 ACACATGCCGTCACATACATTGCAAGAAGGTCTCAAAGGTTCTACTTGTAAAATTGTGTA 484
||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 417 ACACATGCCGTCACATATGTTGCAAGAAGGTCTCAAAGATTCTACTTGTAAATTTGTGTA 476
Query 485 TATGTCTAGAAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 544
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATGTCCAGGAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 536
Query 545 AACCGATGATAACATAATAAGCAGTGTCGAGGATACATTTGAGATGTTTTGTAGGGGAGT 604
||||||||||||| | ||||| || |||||||||| |||||||||||||||||||||||
Sbjct 537 AACCGATGATAACGTTTTAAGCGGTTTCGAGGATACGTTTGAGATGTTTTGTAGGGGAGT 596
Query 605 CAAC-TTTTTCGGGCCTTTTTGGGACCATGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 663
|| | ||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 CACCATTTTT-GGACCTTTTTGGGACCAAGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 655
Query 664 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGAAGAACCTCGTGAGCAGA 723
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 656 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGCAGAACCTCGTGAGCAGA 715
Query 724 TCAAGAGACTAGCCGAATTCTTAGGATGTCTTTTTACTAAGGAAGAA 770
|||||||||| || || |||||||| |||| ||||||||||||||||
Sbjct 716 TCAAGAGACTTGCAGAGTTCTTAGGTTGTCCTTTTACTAAGGAAGAA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5