BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45090.1
Length=2535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323187 jgi|Araly1|323187|fgenesh1_pm.C_scaffold_5000731 3253 0.0
Ahg496224 jgi|Araly1|496224|fgenesh2_kg.8__2040__AT5G60760.1 1288 0.0
> Ahg323187 jgi|Araly1|323187|fgenesh1_pm.C_scaffold_5000731
Length=2157
Score = 3253 bits (1761), Expect = 0.0
Identities = 2035/2166 (94%), Gaps = 23/2166 (1%)
Strand=Plus/Plus
Query 230 ATGATGACGGAG---GCGACGAAGGTGTTGTATATAGTGGTGCGTGAAGAAGGTGATGAT 286
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGATGACGGAGACAACGACGAAGGTTTTGTATATAGTGGTGCGTGAAGAAGGTGAGGAT 60
Query 287 GATGATAATAATGGAGATGATTCGTTTAGGTATACGCGTCCTGTTTTGCAGAGTACTCTT 346
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 61 GATGATAATAATGGAGATGATTCGTTTCGTTACACGCGTCCTGTTTTGCAGAGTACTCTT 120
Query 347 CAGCTTATGGGTTGCAAAGCTCGTCACGCCTTCAAGATCAGCCGTAGGGTTTTTGAGTTA 406
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CAGCTTATGGGTTGCAAAGCTCGTCACGCCTTCAAGATCAGCCAAAGGGTTTTTGAGTTA 180
Query 407 ATAAGAAGTGAGGGATCTTGTAATA-CTTCACCAGAGAATGGGAAGGAACCTGAATTTGC 465
|||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||| |
Sbjct 181 ATAAGAAGCGAGGGATCTTGTAATAGC-TCACCAGAGAATGGGAAGGAAACTGAATTTAC 239
Query 466 TAAGGAAGTTGGTGGTTCAACTTGTGTAGAGAAACTTAACTGTTTGGTTG-T--TGCTGG 522
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 240 TAAGGAAGTTGGTGGTTCAACTTGTGTAGAGAAACTTAACTGTTTGGTTGCTGATGATGT 299
Query 523 TGATGTTGACAAGAATAAGAGTAAGCCATTTGAGATGTACAAAAGACGGACAACTGTTGT 582
|||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 300 TGATGTTGACAAGAATAAAAGTAAACCGTTTGAGATGTACAAAAGGCGGACAACTGTTGT 359
Query 583 TGTTTCACGAGAGATATTCGTT-GATGTTGTGTGTGATGCACTGGCTGAATATAAGTATG 641
||||||||| || |||||| || ||||||||||||||||| |||||||| |||||||| |
Sbjct 360 TGTTTCACGGGAAATATTC-TTGGATGTTGTGTGTGATGCCCTGGCTGAGTATAAGTACG 418
Query 642 TTGGTCGCGACCAAAGGGCAGATTTGATTCTGGCATGCAGAATCCGAGAAAGGAAAGAAT 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGTCGCGACCAAAGGGCAGATTTGATTCTGGCATGCAGAATCCGAGAAAGGAAAGAAT 478
Query 702 CTGTAACTGTTTTGCTCTGTGGCACCAGCGGCTGTGGTAAATCTACGTTGTCTGCATTGC 761
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 479 CTGTAACTGTTTTGCTCTGTGGCACCAGTGGCTGTGGTAAATCTACATTGTCTGCATTGC 538
Query 762 TGGGTAGCAGGTTGGGTATTACGACTGTGGTATCAACTGACTCTATAAGGCACATGATGA 821
|||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TGGGTAACAGGCTGGGGATTACGACTGTGGTATCAACTGACTCAATAAGGCACATGATGA 598
Query 822 GGAGCTTTGCTGATGAGAAGCAGAATCCTTTGCTGTGGGCTTCAACATACCATGCTGGAG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAGCTTTGCTGATGAGAAGCAGAATCCTTTGCTGTGGGCTTCAACATACCATGCTGGAG 658
Query 882 AGTACCTTGACCCTGTGGCAGTTGCCGAGTCaaaagccaaaagaaaagccaaaaaaCTGA 941
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 659 AGTACCTTGACCCTGTGGCAGTAGCTGAGTCAAAAGCCAAAAGAAAAGCCAAAAAGTTGA 718
Query 942 AAGGCTCTCGAGGTGTAAACTCCAATGCCCAAAAGACGGATGCTGGATCAAACTCTAGCA 1001
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 719 AAGGCTCTCGAGGTGTAAATTCCAATACCCAAAAGACGGATGCTGGATCAAACTCTGGCA 778
Query 1002 CCACTGAGTTGCTAAGTCATAAGCAGATGGCTATAGAAGGGTATAAGGCACAAAGTGAGA 1061
|||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 CCACTGAGCTATTAAGTCATAAGCAGATGGCTATAGAAGGCTATAAGGCACAAAGTGAGA 838
Query 1062 TGGTGATTGACAGTCTTGATAGGCTCATTACCACTTGGGAAGAGAGGAATGAGTCAGTAG 1121
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 839 TGGTGATTGACAGTCTCGATAGGCTCATTACAACTTGGGAAGAGAGGAAAGAGTCGGTAG 898
Query 1122 TCGTTGAAGGAGTCCACTTAAGCCTCAACTTTGTGATGGGACTGATGAAAAAGCACCCTT 1181
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 TCGTTGAAGGGGTTCACTTAAGCCTTAACTTTGTGATGGGACTGATGAAAAAGCACCCTT 958
Query 1182 CGATTGTTCCCTTCATGGTATACATCGCTAACGAGGAGAAACACTTGGAACGGTTTGCTG 1241
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
Sbjct 959 CGATTGTTCCCTTCATGGTATACATAGCCAACGAGGAGAAACAATTGGAACGGTTTGCAG 1018
Query 1242 TCCGAGCCAAGTACATGACATTGGACCCAGCAAAGAATAAGTATGTAAAATATATACGTA 1301
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TACGAGCCAAGTACATGACATTGGACCCAGCAAAGAATAAGTATGTAAAATATATACGTA 1078
Query 1302 ACATCAGAACAATACAGGATTATCTATGCAAACGAGCTGACAAACATCTCGTTCCTAAGA 1361
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1079 ACATCAGAACAATACAGGATTATCTATGTAAACGAGCTGACAAGCATCTCGTTCCTAAGA 1138
Query 1362 TAAACAACACAAATGTCGACAAGAGCGTGGCTACAATCCACGCGACGGTCTTTGGTTGCC 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAAACAACACAAATGTCGACAAGAGCGTGGCTACAATCCACGCGACGGTCTTTGGTTGCC 1198
Query 1422 TGCGTAGACGTGAAACTGGAGAGAAGCTCTATGATACAACCACAAACACCGTTTCTGTTA 1481
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1199 TGCGTAGACGTGAAACAGGAGAGAAGCTCTATGATACAACCACAAATACCGTTGCTGTTA 1258
Query 1482 TTGACGACGAGCATAGGAACCAATGTGCAGCCAATTCATTAACTTCCAAGGGAATGTTTC 1541
| ||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1259 TCGACGATGAGCACAGGAACCAATGTACAGCCAATTCATTAAGTTCCAAGGGAATGTTTC 1318
Query 1542 AGGTGATCCAAAGACAAGGCTCCTCTAGGCGATT-TATGGCTCTTTGCAATACTGATGGT 1600
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1319 AGCTGATCCAAAGACAAGGCTCCTCTAGGCG-TTATATGGCTCTTTGCAATACTGATGGT 1377
Query 1601 ACGGTAGCAAAAACTTGGCCTGTTGCTTCCGTTGGTAAGATCAGGAAGCCCGTCG-TGAA 1659
|| || || | |||||||||||||| |||||||| |||||||||||||||||||| || |
Sbjct 1378 ACTGTGGCCAGAACTTGGCCTGTTGGTTCCGTTGATAAGATCAGGAAGCCCGTCGTTG-A 1436
Query 1660 TACTGAGATGGATGATGGAACAGAGCATCAACTACATAAAGCTGAACCAGTGAATCTTCA 1719
||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1437 TACTGAGATGGGTAATGGAACAGAGCATCAGCTACATAAAGCTGAACCTGTGAATCTTCA 1496
Query 1720 ATTTGGTCACTTTGGGATCAGCGCTTGGCCTAGTGATGGCGCAACTAGCCACGCCGGGAG 1779
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1497 GTTCGGTCACTTTGGGATCAGCGCTTGGCCTAGTGATGGCGCAACTAGCCATGCCGGGAG 1556
Query 1780 TGTGGATGACTTAAGAGCAGATATTATTGAAACCGGAAGCAGGCATTACTCTTCTTGCTG 1839
||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1557 TGTGGATGAATCAAGAGCAGATAATATTGAAACTGGAAGCAGGCATTACTCTTCTTGCTG 1616
Query 1840 CAGTTCGCCTCGGACATCTGATGGGCCTTCAAAAGAGCTGATGGAGGAGCAGTCTGTGA- 1898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1617 CAGTTCGCCACGGACATCTGATGGGCCTTCAAAAGAGCTGATGGAGGAGCAGTCTGT-AG 1675
Query 1899 ATGGGAGCGATGAAGATGATGAAGAAGGCGACGATGATTTTCATGAGCCTGATTCTGATG 1958
|||||||||||| | | |||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 1676 ATGGGAGCGATG-A-A-GATGAAGAAGGCGATGATGATTTTCCTGAGCCAGATTCTGATG 1732
Query 1959 AAGATCTCAGCGATAACAATGACGAGCGCAACCGCGACGAGATTGGATCGGTGGATGAGG 2018
|||||||||| ||||||||||| || |||||||| |||||| ||||||||||||||||||
Sbjct 1733 AAGATCTCAGAGATAACAATGATGAACGCAACCGTGACGAGGTTGGATCGGTGGATGAGG 1792
Query 2019 AATCGACAAAGTCAGATGAAGAGTACGATGATCTGGCAATGGAAGACAAGAGTTACTGGA 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 AATCGACAAAGTCAGATGAAGAGTACGATGATCTGGCAATGGAAGACAAGAGTTACTGGA 1852
Query 2079 CAGACAACGAAGAAGAAGAGTCTCGAGACACAATCTCCATGGTATCGCAAAA-CAACCAC 2137
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1853 CAGACAACGAAGAAGAAGAGTCTCGAGACACAATCTCCATGGTGTC-CAAAAACAACCAC 1911
Query 2138 AACGAGGCTTCAAAGACCA-ACAAAGATGACAAATACTCCCAAAACCTCGATCTTTTCCT 2196
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AACGAGGCTACAAAG-CCTTACAAAGATGACAAATACTCCCAAAACCTCGATCTTTTCCT 1970
Query 2197 CAAGACAACGAACCAGCCATTGACTGAATCCCTTGAGCTCACGAGTGAATACAGAAACAG 2256
|| ||| ||||||||||||| | ||||||| ||||||| ||||||||||| | |||||
Sbjct 1971 CAGGACCGCGAACCAGCCATTAATTGAATCCTTTGAGCTGTCGAGTGAATACGGGAACAG 2030
Query 2257 AATGGGAGTAGCCGCCTCGGATAAAGCCAAGATGAGGAAACGTTCACTTAGTATTCCGCC 2316
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2031 AATGGGAGTAGCCGACTCGGATAAAGCCAAGATGAGGAAACGTTCACTTAGTATTCCGGC 2090
Query 2317 TGTCGGGAAACATGGTTCAATCATAGATGACCAGATTTTGGCTAACCAGACTGATTCAGT 2376
||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2091 TGTTGGGAAACATCGTTCAATCATTGATGACCAGATTTTGGCTAACCAGACTGATCCAGT 2150
Query 2377 ACTCTA 2382
|||||
Sbjct 2151 TCTCTA 2156
> Ahg496224 jgi|Araly1|496224|fgenesh2_kg.8__2040__AT5G60760.1
Length=2603
Score = 1288 bits (697), Expect = 0.0
Identities = 1523/1903 (80%), Gaps = 132/1903 (7%)
Strand=Plus/Plus
Query 298 TGGAGATGATTCGTTTAGGTATACGCGTCCTGTTTTGCAGAGTACTCTTCAGCTTATGGG 357
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGA-AAGATTCGTTTAGGTATACGCGTCCTGTTTTGCAGAGTACTCTTCAGCTTATGGG 239
Query 358 TTGCAAAGCTCGTCACGCCTTCAAGATCAGCCGTAGGGTTTTTGAGTTAATAAGAAGTGA 417
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 240 ATGCAAAGCTCGTCATGCCTTCAAGATTAGCCGCAGGGTTTTTGAGTTAATAAGAAGTGA 299
Query 418 GGGATCTTGTAATAC--T-T-CA-C-C---AG---A-GAAT-GGGAAGGAACCTGAATTT 463
|||||| | |||| | | | || | | | | | || | ||| ||| ||||||||
Sbjct 300 GGGATCCT-TAATCCTTTCTCCATCTCTTTCGCCCACGCATAGTGAA-GAATCTGAATTT 357
Query 464 GCTA-AGGA-AGTTGGTGGTTCAACTTGTG-T-A-G-AG-AAA--CTTAAC--TGTT--- 509
| | | || || || | |||| |||||| | | | || ||| | |||| |||
Sbjct 358 -C-AGAAGAGAGGTGATACTTCAGCTTGTGCTAATGTAGAAAAGGC-TAACAAAGTTAAC 414
Query 510 TGGTT-GTTGCTGGTGATGTTGACAAGAATAAGAGTAAGCCATTTG-AGATGTACAAAAG 567
| || | | ||| ||||||||| |||| ||| |||||||| |||| || ||||||||||
Sbjct 415 AGTTTGGCTACTGATGATGTTGATAAGAGTAAAAGTAAGCCGTTTGAAG-TGTACAAAAG 473
Query 568 ACGGACAACTGTTGTTGTTTCACGAGAGATATTCGTTGATGTTGTGTGTGATGCACTGGC 627
|| ||||| ||||||||||| || || ||||||||| | ||||| ||||||||| ||||
Sbjct 474 GCGAACAACGGTTGTTGTTTCGCGGGATATATTCGTTAACGTTGTCTGTGATGCATTGGC 533
Query 628 TGAATATAAGTATGTTGGTCGCGACCAAAGGGCAGATTTGATTCTGGCATGCAGAATCCG 687
||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 534 TGAATATAAGTATGTGGGTCATGACCAAAGGGCAGACTTGATTCTGGCGTGCAGAATCCG 593
Query 688 AGAAAGGAAAGAATCTGTAACTGTTTTGCTCTGTGGCACCAGCGGCTGTGGTAAATCTAC 747
|||||||||||||||||| |||||| |||| || || || || |||||||| ||||||||
Sbjct 594 AGAAAGGAAAGAATCTGTGACTGTTCTGCTGTGCGGTACTAGTGGCTGTGGCAAATCTAC 653
Query 748 GTTGTCTGCA-TTGCTGGGTAGCAGG-TTGGGTATTACGACTGTGGTATCAACTGACTCT 805
| || ||| || |||| || ||| ||||| ||||| || ||||| ||||| |||||
Sbjct 654 ACTCTCCGCACTT-TTGGGAAGTAGGCTTGGG-ATTACAACGGTGGTCTCAACCGACTCA 711
Query 806 ATAAGGCACATGATGAGGAGCTTT-GCTGATGAGAAGCAGAATCCTTTGCTGTGGGCTTC 864
|| | |||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||
Sbjct 712 ATCCGTCACATGATGAGGAG-TTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTTC 770
Query 865 AACATACCATGCTGGAGAGTACCTTGACCCTGTGGCAGTTGCCGAGTCaaaagccaaaag 924
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 771 AACATACCATGCTGGAGAGTACCTTGACCCCGTGGCAGTTGCTGAGTCAAAAGCCAAAAG 830
Query 925 -a-aa-agcc--aa-a----a-a--aCTGA-AA-G-----GC-----TCTC-G-AGGTGT 957
| || |||| || | | | | ||| || | || ||| | ||||||
Sbjct 831 AAGAAGAGCCAAAAGATTGGATAGTATTGAGAACGAAAAAGCGAAGGCCTCTGAAGGTGT 890
Query 958 -AA-ACT-CCAATGCCCAAAAGACGGATGCTGGATCAAACTCTAGCACCACTG-AGTTGC 1013
|| || ||| | ||| |||| |||| ||||||||| || | |||| ||| | |||
Sbjct 891 GAAGGCTAATAATACTCAACAGACTGATGTTGGATCAAAATCAACCACCCCTGTA-TTGT 949
Query 1014 TAAGTCATAAGCAGATGGCTATAGAAGGGTATAAGGCACAAAGTGAGATGGTGATTGACA 1073
|||||| ||||| |||||| ||||||| | |||||| |||||||| ||||| |||||||
Sbjct 950 TAAGTCCCAAGCAAATGGCTGTAGAAGGATTTAAGGCTCAAAGTGAAATGGTTATTGACA 1009
Query 1074 GTCTTGATAGGCTCATTACCACTTGGGAAGAGAGGAATGAGTCAGTAGTCGTTGAAGGAG 1133
||| ||||||||||||||| | |||||||| | ||| ||||| || || |||||||| |
Sbjct 1010 ATCTCGATAGGCTCATTACCGCATGGGAAGAAAAGAAAGAGTCTGTTGTTGTTGAAGGTG 1069
Query 1134 TCCACTTAAGCCTCAACTTTGTGATGGGACTGATGAAAAAGCACCCTTCGATTGTTCCCT 1193
||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 1070 TCCACTTAAGCCTCAACTTTGTGATGGGACTAATGAAAAAGCATCCTTCGATAGTTCCTT 1129
Query 1194 TCATGGTATACATCGCTAACGAGGAGAAACACTTGGAACGGTTTGCTGTCCGAGCCAAGT 1253
|||||||||||||||| |||||||||||||| |||||||| ||||| || |||| ||||
Sbjct 1130 TCATGGTATACATCGCAAACGAGGAGAAACATTTGGAACGATTTGCAGTTAGAGCTAAGT 1189
Query 1254 ACATGACATTGGACCCAGC-AAAGAATAAGTATGTAAAATATATACGTAACATCAGAACA 1312
||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 1190 ACATGACCCTGGACCCAGAGAAA-AACAAGTATGTAAAATATATACGTAACATCAGAACA 1248
Query 1313 ATACAGGATTATCTATGCAAACGAGCTGACAAACATCTCGTTCCTAAGATAAACAACACA 1372
||||||||||| || || ||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 1249 ATACAGGATTACCTTTGTAAACGAGCTGACAAACACCTAGTTCCCAAGATAAACAATACC 1308
Query 1373 AATGTCGACAAGAGCGTGGCTACAATCCACGCGACGGTCTTTGGTTGCCTGCGTAGACGT 1432
|||||||||||||| |||||| | ||||||||||| ||||| ||||||||||||| ||
Sbjct 1309 AATGTCGACAAGAGTGTGGCTGCGATCCACGCGACAGTCTTCAGTTGCCTGCGTAGGCGA 1368
Query 1433 GAAACTGGAGAGAAGCTCTATGATACAACCACAAACACCGTTTCTGTTATTGACGACGAG 1492
||| | |||||| ||||||||||| | ||||| || || || || || || || || |||
Sbjct 1369 GAAGCAGGAGAGCAGCTCTATGATGCTACCACCAATACTGTCTCAGTGATCGATGATGAG 1428
Query 1493 CATAGGAACCAATGTGCAGCCAATTCATTAACTTCCAAGGGAATGTTTCAGGTGATCCAA 1552
| || ||||| ||| | |||||||| || | |||||| |||||||||||| ||||||||
Sbjct 1429 TACAGAAACCAGTGTACTGCCAATTCGTTGAGTTCCAAAGGAATGTTTCAGCTGATCCAA 1488
Query 1553 AGACAAGGCTCCTCTAGGCGATTTA-TGGCTCTT-TGCAATACTGATGGTACGGTAGCAA 1610
||| |||| || ||| ||| || || |||||||| | |||||||||||| || | ||||
Sbjct 1489 AGAAAAGGTTCTTCTCGGC-ATCTAATGGCTCTTCT-CAATACTGATGGCACTTTCGCAA 1546
Query 1611 AAACTTGGCCTGTT-GCT--TCCG-TTGGTAAGATCAGGAA-GCCCGTCGTGAATACTGA 1665
||||||||||||| | | | | ||| | ||| | |||| ||| ||| | || |||
Sbjct 1547 GAACTTGGCCTGTTAG-TGGTAAGGTTGATGAGAGC-GGAAAGCCAGTCTTTTGTAATGA 1604
Query 1666 GATG--G-ATGA---TGGAACAGAGCA-----TC-A---A--C-TACATAAAGCTGAACC 1707
|||| | | || ||||| ||||| || | | | |||| ||||| |||||
Sbjct 1605 GATGATGGAAGAAAATGGAATGGAGCACCCGGTCTATGGATACCTACAGAAAGCCGAACC 1664
Query 1708 AGTGAATCTTCAATTTGGTC-ACTTTGGGATCAGCGCTTGGCCTAGTGATGGCGCAACTA 1766
||| |||||||| ||||||| | ||||||||||| ||||||||||||||||| || || |
Sbjct 1665 AGTAAATCTTCAGTTTGGTCTA-TTTGGGATCAGTGCTTGGCCTAGTGATGGAGCCACGA 1723
Query 1767 GCCACGCCGGGAGTGTGGATGACT-TAAGAGCAGATATTATTGAAACCGGAAG-CAGGCA 1824
||| |||||||||||| ||||||| || |||| || | ||||||| | || | || |
Sbjct 1724 GCCGCGCCGGGAGTGTAGATGACTCTA-GAGCTGACGTGGCTGAAACCAGCAGTC-GGTA 1781
Query 1825 TTACTCTTCTTGCTGCAGTTCGCCTCGGACATCTGATGGGCCTTCAAAAGAGCTGATGGA 1884
|||||||||||||||||| |||||| ||| ||||| || |||| |||||||| | |||
Sbjct 1782 TTACTCTTCTTGCTGCAGCTCGCCTAGGATGTCTGAAGGAACTTCTAAAGAGCTTAAGGA 1841
Query 1885 GGAGCAGTCTGTGAATGGGAGCGATGAAGATGATGAAGAAGGCGACGATGATTTTCATGA 1944
||| ||||| ||| |||||||||||||||| | | || || | |||| || ||
Sbjct 1842 GGATCAGTCGGTGCATGGGAGCGATGAAGAAG-TC--GA-GG--A---TGATCCTCCCGA 1892
Query 1945 GCCTGATTCTGATGAAGATCTCAGCGATAACAATGACGAGCGCA-ACCGCGACGAGATTG 2003
||| ||| | ||| | | |||||| || || || |||| | ||| |||||| | |
Sbjct 1893 GCCAGATACAGATT----T-T-AGCGATGACGATAACAAGCG-AGACCATGACGAGGTGG 1945
Query 2004 GATCGGTGGATGAGGAATCGACAAAGTCAGATGAAGAGTACGATGATCTGGCAATGGAAG 2063
| ||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1946 GTTCGGTTGATGAGCAATCAACAAAGTCAGATGAGGAGTACGATGATCTTGCAATGGAAG 2005
Query 2064 ACAAGAGTTACTGGACAGACAACGAAGAAGAAGAGTCTCGAGA 2106
|||| | |||||||| || |||| | |||||||| |||||
Sbjct 2006 ACAAAAACTACTGGACGGATGACGA-G--GAAGAGTCACGAGA 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95568424705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5