BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45093.1

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937166 jgi|Araly1|937166|scaffold_501357.1                        279    4e-75
  Ahg477834 jgi|Araly1|477834|fgenesh2_kg.3__535__AT3G05460.1         54.7    3e-07


> Ahg937166 jgi|Araly1|937166|scaffold_501357.1
Length=286

 Score =  279 bits (151),  Expect = 4e-75
 Identities = 192/211 (91%), Gaps = 6/211 (3%)
 Strand=Plus/Plus

Query  1    ATGAGAAGCATTTCATTCAAACTTTTGTTATTGGTTTCTCTTCTTGTCGTCGTTTCTCGA  60
            |||| |||||||||||| | |||||||||||| ||||||||||| |||||||||||||||
Sbjct  24   ATGAAAAGCATTTCATTTATACTTTTGTTATTAGTTTCTCTTCTAGTCGTCGTTTCTCGA  83

Query  61   TACACTCTTGCGTATGAAGATTCTTGTTCGACAGATGAAGAATGCAGAAGAAACTGCCTA  120
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  84   CACACTCTTGCGTATGAAGATTCTTGTTCGACAGATGAAGAATGCAGAAAAAACTGCCTA  143

Query  121  TGTGATGTAGCATATTGCGACAAAAGCCGTGATAAGTGCGATTATGGATTT-ATG--A--  175
            ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||  |  
Sbjct  144  TGTGATGTAGCGTATTGCGACAAAAGCCGTGATAAGTGTGATTATGGATTTCATGTTATG  203

Query  176  A-TAGAGTTGATGTCCGTTTTCCCAAACATC  205
            | || |||||||||| |||||  ||||||||
Sbjct  204  AATAAAGTTGATGTCGGTTTTTTCAAACATC  234


> Ahg477834 jgi|Araly1|477834|fgenesh2_kg.3__535__AT3G05460.1
Length=460

 Score = 54.7 bits (29),  Expect = 3e-07
 Identities = 43/49 (88%), Gaps = 4/49 (8%)
 Strand=Plus/Plus

Query  1   ATG-AGAAGCATTT-CATTCAAACTTTTGTTATTGGTTTCTCTTCTTGT  47
           ||| |||| | ||| | ||| ||||||||||||||||||||||||||||
Sbjct  43  ATGAAGAA-CGTTTCCTTTC-AACTTTTGTTATTGGTTTCTCTTCTTGT  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8401417420


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5