BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45100.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323188 jgi|Araly1|323188|fgenesh1_pm.C_scaffold_5000732 2169 0.0
> Ahg323188 jgi|Araly1|323188|fgenesh1_pm.C_scaffold_5000732
Length=1380
Score = 2169 bits (1174), Expect = 0.0
Identities = 1315/1378 (95%), Gaps = 29/1378 (2%)
Strand=Plus/Plus
Query 101 ATGGCGGAACCACCAAAGCTTAGGGTTTTAATGGTCTCTGATTTCTTCTTCCCAAACTTT 160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAACCACCAAAGCTCAGGGTTTTAATGGTCTCTGATTTCTTCTTCCCAAACTTT 60
Query 161 GGTGGTGTCGAGAATCACATCTATTACCTCTCTCAATGCTTGTTAAAGCTCGGTCACAAG 220
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGTGTCGAGAATCACATCTATTATCTCTCTCAATGCTTGTTAAAGCTCGGTCACAAG 120
Query 221 GTGGTTGTTATGACACATGCTTATGGGAACCGGTCTGGAGTTAGATACATGACTGGTGGA 280
||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 121 GTGGTGGTTATGACACATGCTTATGGGAACCGTTCTGGAGTTCGATACATGACTGGTGGA 180
Query 281 CTCAAAGTCTATTATGTACCTTGGAGACCTTTTGTTATGCAGACTACATTTCCGACGGTT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCAAAGTCTATTATGTACCTTGGAGACCTTTTGTTATGCAGACTACATTTCCGACGGTT 240
Query 341 TATGGAACACTTCCCATTGTGAGGACTATACTTAGACGCGAGAAAATCACGGTAGTTCAT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TATGGAACACTTCCCATTGTGAGGACTATACTTAGACGCGAGAAAATCACGGTGGTTCAT 300
Query 401 GGACATCAAGCTTTCTCTACGCTTTGTCATGAAGCTTTAATGCATGCCAGGACAATGGGC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGACATCAAGCTTTCTCTACGCTTTGTCATGAAGCTTTAATGCATGCCAGGACAATGGGC 360
Query 461 TATAAAGTTGTGTTCACAGATCATTCCTTGTACGGTTTTGCTGATGTTGGTAGCATCCAT 520
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 TATAAAGTTGTGTTCACTGATCATTCCTTGTACGGTTTTGCTGATGTTGGGAGTATCCAT 420
Query 521 ATGAACAAGGTTTTACAGTTTAGTTTAGCAGATATTGATCAGGCGATTTGTGTTTCACAC 580
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 ATGAACAAGGTTTTACAGTTTAGTTTAGCAGATATAGACCAGGCGATTTGTGTTTCACAC 480
Query 581 ACGAGCAAGGAGAATACGGTTCTAAGGTCTGGATTGTCCCCAGCAAAGGTTTTTATGATA 640
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGAGCAAGGAGAATACTGTTCTAAGGTCTGGATTGTCCCCAGCAAAGGTTTTTATGATA 540
Query 641 CCGAATGCTGTTGATACTGCTATGTTCAAGCCCGCTTCTGTTCGACCCAGTACTGATATT 700
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 CCAAATGCTGTTGATACTGCTATGTTCAAGCCCGCTTCTGTTCGACCCAGTGCTGATATC 600
Query 701 ATTACTATAGTTGTCATAAGTAGATTGGTTTATCGAAAAGGTGCGGATTTGCTCGTGGAA 760
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 601 ATTACTATAGTTGTCATAAGTAGATTGGTTTATCGGAAAGGTGCTGATTTGCTCGTTGAA 660
Query 761 GTCATTCCAGAAGTATGCCGTTTATACCCAAATGTTCGTTTTGTAGTTGGAGGGGATGGA 820
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GTCATTCCAGAAGTATGCCGTTTATACCCGAATGTTCGTTTTGTAGTTGGAGGGGATGGA 720
Query 821 CCAAAACATGTGCGACTCGAGGAAATGAGAGAGAAGCATTCTCTACAAGATAGAGTCGAA 880
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 CCTAAACATGTGCGACTCGAGGAAATGAGAGAGAAGCATTCTCTCCAAGATAGAGTCGAA 780
Query 881 ATGCTAGGTGCAGTTCCGCATTCTCGTGTGCGCTCTGTTTTGGTTACCGGTCATATTTT- 939
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 ATGTTGGGTGCAGTTCCGCATTCTCGTGTGCGCTCTGTTTTGGTGACCGGTCATATTTTT 840
Query 940 CTTAAACAGTTCTTTAACAGAAGCCTTCTGCATAGCTATATTAGAGGCGGCTAGTTGCGG 999
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 CTTAA-CAGTTCTTTAACAGAAGCCTTCTGCATAGCCATATTAGAGGCGGCTAGTTGCGG 899
Query 1000 ATTATTAACTGTCAGCACTCGTGTTGGAGGTGTCCCAGAGG--T-------C-----TT- 1044
||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 900 ATTATTAACTGTCAGCACTCGTGTTGGAGGTGTCCCAGAGGCGTTTTTTTTCCACGGTTT 959
Query 1045 AC----C--A---GATGACATGGTTGTACTTGCTGAACCAGATCCGGATGATATGGTACG 1095
|| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACAGGTCCTACCAGATGACATGGTTGTACTTGCTGAACCAGATCCGGATGATATGGTACG 1019
Query 1096 AGCTATTGAGAAGGCAATATCAATACTTCCAACTATTAACCCCGAGGAGATGCACAATCG 1155
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1020 AGCAATTGAGAAGGCAATATCAATACTTCCAAGTATTAACCCCGAGGAGATGCACAATCG 1079
Query 1156 AATGAAGAAGCTCTACAGTTGGCAAGATGTTGCTAAAAGAACCGAGATTGTGTATGACCG 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1080 AATGAAGAAGCTCTACAGTTGGCAAGATGTTGCTAAAAGAACCGAGATTGTGTACGATCG 1139
Query 1216 TGCCTTGAAGTGTTCAAATAGGAGTCTTCTAGAACGTCTAAT-GCGGTTCCTCTCGTGTG 1274
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1140 TGCCTTGAAGTGTTCAAATAGGAGTCTTCTAGAACGTCTA-TCGCGGTTCCTCTCGTGTG 1198
Query 1275 GAGCTTGGGCAGGGAAGCTATTTTGTATGGTTATGATCCTCGATTACTTGCTTTGGCGGT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAGCTTGGGCAGGGAAGCTATTTTGTATGGTTATGATCCTCGATTACTTGCTTTGGCGGT 1258
Query 1335 TACTTCAGTTACTGCAGCCTGATGAAGATATCGAGGAGGCACCCGATATCTGTCTTTGCC 1394
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 TACTTCAGTTACTACAGCCTGATGAAGATATCGAGGAGGCACCCGATATCCGTCTTTGCC 1318
Query 1395 ATCACCGAGGGGTTGAGGTATCTGAGGGTCT-AAGGAAGAAGATAAAGTGAGAAATGG 1451
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1319 ATCAGCGAGGCGTCGAGGTATCTGAGGGTCTCAAGGAAGAAGATAAAGTGAGAAATGG 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5