BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45110.1 Length=363 Score E Sequences producing significant alignments: (Bits) Value Ahg937168 jgi|Araly1|937168|scaffold_501359.1 363 7e-100 > Ahg937168 jgi|Araly1|937168|scaffold_501359.1 Length=698 Score = 363 bits (196), Expect = 7e-100 Identities = 307/358 (86%), Gaps = 18/358 (5%) Strand=Plus/Plus Query 19 CATTGTACTA-ACACAAGCGGTGTTGTTTGTCATAACAATTACAACTG-TACTATTGATA 76 |||| ||| | ||||||| |||||||||| |||||||||||||||| | ||||||||||| Sbjct 313 CATTTTAC-AGACACAAGTGGTGTTGTTTATCATAACAATTACAAC-GTTACTATTGATA 370 Query 77 ACTCTATCCATTATGCGGATACACGTGGTGTTGTTAGCCATCACCGAGAGAATATTACTG 136 ||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||| Sbjct 371 ACTCTATCCATTATGCGGACACAAGTGGTGTTGTCAGCCATCAGCGAGAGAATATTACTG 430 Query 137 GCCATCATGGACTGGTATTTCCGGCGGCTACAATGAACG-GATATGGTCCTGCAACTAGT 195 | ||||||||||||||||| ||| ||||| |||||| || | ||||||||| |||||||| Sbjct 431 GTCATCATGGACTGGTATTCCCGACGGCTGCAATGACCGAG-TATGGTCCTTCAACTAGT 489 Query 196 TTTCC----A-G-ATATGAGGGAAAATGGGCACTTGATGGTGAATCAAAATAGAC-C--T 246 ||||| | | |||||||||||||||||||||||||||| ||||| || || | | | Sbjct 490 TTTCCGGCGAAGGATATGAGGGAAAATGGGCACTTGATGGTTAATCATAACAGCCGCCCT 549 Query 247 GTGACGCTACGACCATCAATGTCC-CAGCAGCAACCACAACCACAACCACTGTCTGATGA 305 || | |||||||||||||||| || || |||||||| || || |||||||||| |||||| Sbjct 550 GTTATGCTACGACCATCAATG-CCTCAACAGCAACCCCAGCCGCAACCACTGTTTGATGA 608 Query 306 GTATAATAAGGTGGAGACGGGGACTGCTGAGCAAGTCTATGTCCCCTCTCGAGACTAA 363 || |||||||||||||| ||||| | || |||||| | ||||| |||| | ||||||| Sbjct 609 GTTTAATAAGGTGGAGATGGGGAATTCTAAGCAAGCC-ATGTCTCCTCACAAGACTAA 665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12934744671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5