BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45110.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937168 jgi|Araly1|937168|scaffold_501359.1                        363    7e-100


> Ahg937168 jgi|Araly1|937168|scaffold_501359.1
Length=698

 Score =  363 bits (196),  Expect = 7e-100
 Identities = 307/358 (86%), Gaps = 18/358 (5%)
 Strand=Plus/Plus

Query  19   CATTGTACTA-ACACAAGCGGTGTTGTTTGTCATAACAATTACAACTG-TACTATTGATA  76
            |||| ||| | ||||||| |||||||||| |||||||||||||||| | |||||||||||
Sbjct  313  CATTTTAC-AGACACAAGTGGTGTTGTTTATCATAACAATTACAAC-GTTACTATTGATA  370

Query  77   ACTCTATCCATTATGCGGATACACGTGGTGTTGTTAGCCATCACCGAGAGAATATTACTG  136
            ||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||
Sbjct  371  ACTCTATCCATTATGCGGACACAAGTGGTGTTGTCAGCCATCAGCGAGAGAATATTACTG  430

Query  137  GCCATCATGGACTGGTATTTCCGGCGGCTACAATGAACG-GATATGGTCCTGCAACTAGT  195
            | ||||||||||||||||| ||| ||||| |||||| || | ||||||||| ||||||||
Sbjct  431  GTCATCATGGACTGGTATTCCCGACGGCTGCAATGACCGAG-TATGGTCCTTCAACTAGT  489

Query  196  TTTCC----A-G-ATATGAGGGAAAATGGGCACTTGATGGTGAATCAAAATAGAC-C--T  246
            |||||    | | |||||||||||||||||||||||||||| ||||| || || | |  |
Sbjct  490  TTTCCGGCGAAGGATATGAGGGAAAATGGGCACTTGATGGTTAATCATAACAGCCGCCCT  549

Query  247  GTGACGCTACGACCATCAATGTCC-CAGCAGCAACCACAACCACAACCACTGTCTGATGA  305
            || | |||||||||||||||| || || |||||||| || || |||||||||| ||||||
Sbjct  550  GTTATGCTACGACCATCAATG-CCTCAACAGCAACCCCAGCCGCAACCACTGTTTGATGA  608

Query  306  GTATAATAAGGTGGAGACGGGGACTGCTGAGCAAGTCTATGTCCCCTCTCGAGACTAA  363
            || |||||||||||||| ||||| | || |||||| | ||||| |||| | |||||||
Sbjct  609  GTTTAATAAGGTGGAGATGGGGAATTCTAAGCAAGCC-ATGTCTCCTCACAAGACTAA  665



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5