BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45130.1
Length=2552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937171 jgi|Araly1|937171|scaffold_501362.1 3371 0.0
> Ahg937171 jgi|Araly1|937171|scaffold_501362.1
Length=2319
Score = 3371 bits (1825), Expect = 0.0
Identities = 2124/2271 (94%), Gaps = 10/2271 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAGGTTAAAGTTATCGGAAGGAGACGAAGAGAGCGTGAATCAACATGTTGGAAGA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 21 ATGTGGAGGTTAAAGTTATCGGAAGGAGACGAAGAGAGTGTGAATCAACATGTTGGAAGA 80
Query 61 CAGTTTTGGGAATATGATAACCAATTTGGAACCTCTGAAGAGAGACATCACATTAACC-A 119
||||||||||| ||||||||||||| |||||||||||||||||||||||||| | || |
Sbjct 81 CAGTTTTGGGAGTATGATAACCAATATGGAACCTCTGAAGAGAGACATCACA-TCGCCGA 139
Query 120 TCTTCGTAGCAACTTTACTCTCAATCGGTTTTCTTCTAAGCATAGTTCTGATCTTCTCTA 179
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TCTTCGGGGCAACTTTACTCTCAATCGGTTTTCTTCTAAGCATAGTTCTGATCTTCTCTA 199
Query 180 CCGTTTTCAGTGTTGGAAAGAGAAAGGAAAAGGAATGGAGAGACTTCCACAAGTGAAAGT 239
|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 200 CCGTTTTCAGTGTTGGAAAGAGGAAGGAAAAGGAAAGGAGAGGCTTCCACAAGTGAAAGT 259
Query 240 AAAAGAGGGGGAAGAAAGATTGATAAATGAAGAAGTGGTGAATGTTACATTAAGAAGAAG 299
||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 260 AAAAGAGGGGGGAGAAGGAGAGATAAATGAAGAAGTGGTGAATGTAACATTAAGAAGAAG 319
Query 300 TTTGAGATTCTACTCAATACTTCAATCACAAGATGGTTTTTGGCCTGGTGATTATGGTGG 359
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 320 TTTGAGATTCTACTCAACACTTCAATCACAAGATGGGTTTTGGCCTGGTGATTATGGTGG 379
Query 360 CCCTTTGTTTCTCTTGCCTGCTCTGGTGATCGGCTTATATGTGACGGAAGTTTTGGATGG 419
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||| || |
Sbjct 380 CCCTTTGTTTCTCTCGCCTGCTCTGGTGATCAGCTTATATGTGACAGAAGTTTTAGACGC 439
Query 420 AACTTTAACTGCGCAACATCAAATCGAGATTCGTCGTTATCTCTATAACCATCAGAACAA 479
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 440 AACTTTAACTGCTCAACATCAAATGGAGATTCGTCGTTATCTCTATAACCATCAGAACAA 499
Query 480 GGATGGAGGATGGGGACTACACGTAGAAGGGAATAGCACCATGTTTTGTACAG-TGCTCT 538
|||||||||||||||||||||| ||||||||| |||||||||||| ||||| | | ||||
Sbjct 500 GGATGGAGGATGGGGACTACACATAGAAGGGAGTAGCACCATGTTCTGTACGGCT-CTCT 558
Query 539 CATACGTAGCACTGAGACTAATGGGGGAAGAATTAGACGGTGGAGATGGAGCCATGGAAT 598
||||||||||||| || || |||||||||||| | |||||||||||||||||||||||||
Sbjct 559 CATACGTAGCACTAAGGCTCATGGGGGAAGAAATGGACGGTGGAGATGGAGCCATGGAAT 618
Query 599 CAGCTAGAAGTTGGATTCACCACCACGGTGGTGCCACTTTTATTCCCTCCTGGGGCAAGT 658
|||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||
Sbjct 619 CAGCTAGACTTTGGATTCACCACCGTGGTGGTGCCACCTTTGTTCCCTCTTGGGGCAAGT 678
Query 659 TCTGGCTCTCCGTTCTTGGAGCTTATGAGTGGAGTGGGAACAATCCTTTACCTCCAGAGC 718
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 679 TCTGGCTCTCCGTTCTTGGAGCTTATGAATGGAGTGGCAACAATCCTTTACCTCCAGAGC 738
Query 719 TATGGCTCCTTCCATATAGTCTTCCTTTTCATCCGGGCCGAATGTGGTGCCATTGTAGGA 778
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 739 TATGGCTCCTTCCTTATAGTCTTCCATTTCATCCAGGCCGAATGTGGTGCCATTGTAGGA 798
Query 779 TGGTTTATCTTCCAATGTCATATCTATATGGAAGAAGATTTGTTTGTCGTACTAATGGAA 838
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 799 TGGTTTATCTTCCAATGTCATATCTATACGGAAGAAGATTTGTTTGTCGCACTAATGGAA 858
Query 839 CTATTTTATCGCTTCGACGAGAGCTCTACACTATTCCTTATCACCATATCGATTGGGACA 898
||||||| || |||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 859 CTATTTTGTCCCTTCGACGAGAGCTTTACACTGTTCCTTATCATCATATCGATTGGGACA 918
Query 899 CCGCCCGTAATCAATGTGCCAAGGAGGACTTGTACTATCCACATCCAAAGATTCAAGACG 958
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CGGCTCGTAATCAATGTGCCAAGGAGGACTTGTACTATCCACATCCAAAGATTCAAGACG 978
Query 959 TCCTTTGGAGTTGTCTGAATAAATTTGGAGAGCCTCTTCTTGAAAGATGGCCATTGAATA 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TTCTTTGGAGTTGTCTGAATAAATTTGGAGAGCCTCTTCTTGAAAGATGGCCATTGAATA 1038
Query 1019 ACCTCAGAAACCATGCTCTTCAGACAGTAATGCAACACATTCACTATGAAGACCAAAACA 1078
| || |||| || |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1039 AGCTAAGAAGCCGGGCTCTTCAGACAGTGATGCAACATATTCAATATGAAGACCAAAACA 1098
Query 1079 GCCACTATATTTGTATCGGTCCTGTCAACAAAGTCTTGAATATGCTTTGTTGTTGGGTCG 1138
|||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
Sbjct 1099 GCCACTATATTTGTATCGGTCCTGTCAATAAAGTCTTGAATCTTCTTTGTTGTTGGGTTG 1158
Query 1139 AGTCCTCGAATTCCGAGGCATTTAAATCTCACCTCTCGCGGATTAAAGACTATTTGTGGG 1198
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1159 ATTCCTCGAATTCCGAGGCATTTAAATCTCACCTCTCGCGTATTAAAGACTATTTATGGG 1218
Query 1199 TGGCTGAGGATGGAATGAAAATGCAGGGATACAACGGATCTCAGCTGTGGGACGTGACTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TGGCTGAGGATGGAATGAAAATGCAGGGATACAACGGATCTCAGCTGTGGGACGTGACTT 1278
Query 1259 TAGCGGTCCAAGCAATCTTGGCGACGAATTTGGTTGATGACTATGGTTTGATGCTTAAGA 1318
|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1279 TAGCGGTCCAAGCAATCTTGGCTACGAATTTGGTTGATGAGTATGATTTGATGCTTAAGA 1338
Query 1319 AAGCCCATAACTACATCAAGAACACTCAAATAAGGAAAGACACA-AGTGGAGATCCGGGG 1377
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1339 GAGCGCATAACTACATCAAGAACACTCAAATAAGGAAAGACACTTA-TGGAGATCCGGGG 1397
Query 1378 TTGTGGTACCGACACCCGTGCAAGGGAGGATGGGGTTTCTCCACTGGAGACAATCCATGG 1437
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1398 TTGTGGTACCGACACCCGTGCAAGGGAGGATGGGGTTTCTCCACCGCAGACAATCCATGG 1457
Query 1438 CCTGTCTCTGATTGTACTGCTGAAGCCTTGAAGGCGGCGTTGCTATTGTCACAAATGCCG 1497
||||| ||||| |||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 1458 CCTGTTTCTGACTGTACTGCTGAAGCCTTGAAGGCGTCGTTGTTATTGTCACAGATACCA 1517
Query 1498 GTTAATTTAGTTGGAGAACCCATGCCTGAAGAGCATTTAGTTGATGCTGTAAACTTTATC 1557
||| |||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 1518 GTTGATTTGGTTGGAGAAGCCATGCCTGAAGAGCATTTATTTGATGCTGTTGACTTTATC 1577
Query 1558 TTATCATTACAGAACAAGAATGGGGGATTTGCGTCATATGAGCTAACTAGATCATATCCC 1617
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1578 TTATCATTACAGAACAACAATGGGGGATTTGCGTCATACGAGCTAACTAGATCATATCCC 1637
Query 1618 GAGCTAGAGGTTATCAACCCATCAGAGACTTTTGGGGATATCATCATAGATTATCAATAC 1677
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GCGCTAGAGGTGATCAATCCATCAGAGACTTTTGGGGATATCATCATAGATTATCAATAC 1697
Query 1678 GTAGAATGCACGTCAGCTGCCATCCAAGGTCTCGTGTTATTCACAACGTTAAATTCGAGC 1737
|||||||| ||||||||||| ||||||||||| | ||||||||||||| | ||| | | |
Sbjct 1698 GTAGAATGTACGTCAGCTGCAATCCAAGGTCTTGCGTTATTCACAACGATCAATCCAA-C 1756
Query 1738 -TACAAGAGGAAGGAGATAGTAGGAAGCATCAACAAAGCAGTTGAGTTTATTGAAAAAAC 1796
||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 1757 ATACAAGAGGAAAGAGATACTAATATGCATTAACAAAGCAGTTGAGTTTATTGAAAAAAC 1816
Query 1797 ACAACTTCCTGATGGTTCATGGTATGGCTCGTGGGGAGTGTGTTTCACCTATGCAACATG 1856
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1817 ACAACTTCCGGATGGTTCATGGTACGGCTCGTGGGGAGTGTGTTTCACCTATGCGACATG 1876
Query 1857 GTTTGGTATTAAAGGCATGTTGGCTTCAGGCAAAACATATGAGAGCAGTCTTTGTATTAG 1916
||||||||||||||| ||||| ||| | |||||||||||||||| |||||||||||||||
Sbjct 1877 GTTTGGTATTAAAGGGATGTTAGCTGCTGGCAAAACATATGAGACCAGTCTTTGTATTAG 1936
Query 1917 AAAAGCTTGTGGTTTCTTGCTCTCCAAACAACTTTGTTGTGGTGGATGGGGAGAGAGCTA 1976
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1937 AAAAGCTTGTGGTTTCTTGCTCTCCAAACAACTTTGTTGTGGTGGGTGGGGAGAGAGCTA 1996
Query 1977 CCTTTCTTGCCAAAACAAAGTATACACCAATCTTCCTGGGAATAAATCGCATATTGTGAA 2036
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1997 CCTTTCTTGCCAAAACAAAGTATACACCAATCTTCCAGGGAACAAATCGCATATCGTGAA 2056
Query 2037 CACATCATGGGCACTCTTGGCTCTCATTGAAGCGGGACAAGCTAGTAGAGATCC-GATGC 2095
||||||||||||| | ||||||||||||||||| |||||||||| |||||| || |||||
Sbjct 2057 CACATCATGGGCAGTTTTGGCTCTCATTGAAGCAGGACAAGCTAATAGAGA-CCTGATGC 2115
Query 2096 CATTGCATCGCGGGGCAAAATCGCTGATCAACTCGCAGATGGAAGATGGAGATTACCCAC 2155
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2116 CATTGCATCGCGGGGCAAAATCGCTGATCAACTCGCAGATGGAAGACGGAGATTACCCTC 2175
Query 2156 AACAAGAGATACTAGGAGTCTTTAATCGGAATTGTATGATCAGTTACTCAGCTTATAGAA 2215
|||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2176 AACAGGAGATATTGGGAGTCTTTAATCGGAATTGTATGATCAGCTACTCAGCTTATAGAA 2235
Query 2216 ACATATTCCCCATTTGGGCTCTTGGAGAATACCGCAAACTCATGTTGTCTT 2266
|||||||||| ||||||||||| ||||| |||| |||||||||||||||||
Sbjct 2236 ACATATTCCCTATTTGGGCTCTAGGAGAGTACCACAAACTCATGTTGTCTT 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96215958870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5