BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45150.1 Length=498 Score E Sequences producing significant alignments: (Bits) Value Ahg937175 jgi|Araly1|937175|scaffold_501366.1 326 1e-88 > Ahg937175 jgi|Araly1|937175|scaffold_501366.1 Length=586 Score = 326 bits (176), Expect = 1e-88 Identities = 339/413 (82%), Gaps = 29/413 (7%) Strand=Plus/Plus Query 1 ATGGATTCGAAAAATGGAATTAACAACAGCCAAAAGGCAAGAAGGACTCCAAAAGACCGC 60 |||||||||| |||| |||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 21 ATGGATTCGAGAAATAAAATTAACAACAGGCAAAAGGCAACAAGGACTCCAAGAGACCGC 80 Query 61 CATTTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTGTTGCTCCCCAA 120 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 81 CATGTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTATTGCTCCCCAA 140 Query 121 CTATTTAGATTGACAAAAGAACTCGGCTTTAAAACCGATGGTGAAACTGTCAGTTGGCTC 180 |||||| |||||| |||||||||||||| ||||||||||||||||| ||| |||||||| Sbjct 141 GTATTTAAATTGACTAAAGAACTCGGCTTCAAAACCGATGGTGAAACAGTCGGTTGGCTC 200 Query 181 CTCCAGAATGCCGAGCCTGCCATTTTCGCAGCCACGGGACATGGTGTCACCACCACCTCC 240 ||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| || Sbjct 201 CTCCAAAATGCCGAGCCCGCCATTTTCGCCGCCACCGGCCACGGCGTCAACACCACCCCC 260 Query 241 AATGAAGAT-ATCCA-GC-CA-AAT-AG--GAA---T--TT-T--CCTAGTTACACCTTT 285 | ||| | | | ||| | || ||| | ||| | || | || | || |||| || Sbjct 261 AGTGATG-TCACCCATGTTCATAATCATACGAACCGTGGTTATAACC-ACTT-CACCATT 317 Query 286 AATGGTGATAATATTAGTAATAACGTTTTCCCTTGTAC-GGTTGTAAATACTGGTCATCG 344 ||| || | || | ||||||||||||| ||| ||| || | ||||| |||||||| Sbjct 318 AATATTGGTGATC--A-TAATAACGTTTTCTCTTATACAGGC-GCAAATATTGGTCATCA 373 Query 345 TCAGATGGTGTTTCCGGTT-TCTACAATGACAGA-TCATGCAC-CTTCAACTA 394 | ||||||| ||||||| | | |||||||||||| | |||| | ||||| ||| Sbjct 374 TGAGATGGTCTTTCCGGGTGT-TACAATGACAGAAT-ATGC-CGCTTCATCTA 423 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18085749186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5