BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45150.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937175 jgi|Araly1|937175|scaffold_501366.1                        326    1e-88


> Ahg937175 jgi|Araly1|937175|scaffold_501366.1
Length=586

 Score =  326 bits (176),  Expect = 1e-88
 Identities = 339/413 (82%), Gaps = 29/413 (7%)
 Strand=Plus/Plus

Query  1    ATGGATTCGAAAAATGGAATTAACAACAGCCAAAAGGCAAGAAGGACTCCAAAAGACCGC  60
            |||||||||| ||||  |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct  21   ATGGATTCGAGAAATAAAATTAACAACAGGCAAAAGGCAACAAGGACTCCAAGAGACCGC  80

Query  61   CATTTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTGTTGCTCCCCAA  120
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  81   CATGTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTATTGCTCCCCAA  140

Query  121  CTATTTAGATTGACAAAAGAACTCGGCTTTAAAACCGATGGTGAAACTGTCAGTTGGCTC  180
             |||||| |||||| |||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct  141  GTATTTAAATTGACTAAAGAACTCGGCTTCAAAACCGATGGTGAAACAGTCGGTTGGCTC  200

Query  181  CTCCAGAATGCCGAGCCTGCCATTTTCGCAGCCACGGGACATGGTGTCACCACCACCTCC  240
            ||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| ||
Sbjct  201  CTCCAAAATGCCGAGCCCGCCATTTTCGCCGCCACCGGCCACGGCGTCAACACCACCCCC  260

Query  241  AATGAAGAT-ATCCA-GC-CA-AAT-AG--GAA---T--TT-T--CCTAGTTACACCTTT  285
            | ||| | | | ||| |  || ||| |   |||   |  || |  || | || |||| ||
Sbjct  261  AGTGATG-TCACCCATGTTCATAATCATACGAACCGTGGTTATAACC-ACTT-CACCATT  317

Query  286  AATGGTGATAATATTAGTAATAACGTTTTCCCTTGTAC-GGTTGTAAATACTGGTCATCG  344
            |||  || | ||   | ||||||||||||| ||| ||| ||  | ||||| |||||||| 
Sbjct  318  AATATTGGTGATC--A-TAATAACGTTTTCTCTTATACAGGC-GCAAATATTGGTCATCA  373

Query  345  TCAGATGGTGTTTCCGGTT-TCTACAATGACAGA-TCATGCAC-CTTCAACTA  394
            | ||||||| ||||||| | | |||||||||||| | |||| | ||||| |||
Sbjct  374  TGAGATGGTCTTTCCGGGTGT-TACAATGACAGAAT-ATGC-CGCTTCATCTA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5