BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45160.1
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937177 jgi|Araly1|937177|scaffold_501368.1 398 3e-110
> Ahg937177 jgi|Araly1|937177|scaffold_501368.1
Length=320
Score = 398 bits (215), Expect = 3e-110
Identities = 287/321 (89%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 51 AGCTCAT-A-ATAAAACCAATATGGGGAT-AAACTCTAAGCATGTTGTGGTTGTTATTAT 107
||||||| | ||| |||| | ||||| || |||| ||||| || ||||||||||||| ||
Sbjct 1 AGCTCATAACATAGAACCGAGATGGGAATAAAAC-CTAAGTATATTGTGGTTGTTATCAT 59
Query 108 GGTGATGATGGTCATTATAAGCTCATGTTTGGCTGCAAGGAATATAATTCCCCGGGAAAC 167
|| ||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 60 GGCGATGATGATCATAATAAGCTCATGTTTGGCTGCGAGGAATATGATTCCCCGGGAAAA 119
Query 168 TAATCAAGAAAGCGAAAAAGTGTCCCGAGAGATGATCATAGGGAAAGAAGAAGACTCTAC 227
||||||| ||||||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 120 TAATCAACAAAGCGAAAAAATATCTCGAGAGATGATCATAGGGAAAGAAGAAGATTCTAC 179
Query 228 TGAGAAAATAGAGCACCCAAGAAGCAGCGTGGAGAATCACCATTATATCCCAAGACAAGA 287
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TGAGAAAATAGAGCACCCAAGAAGCAGCGTGGAGAATCACCATTACATCCCAAGACAAGA 239
Query 288 TTTCTACAACTATGGACCTGGAGGCGAAAATAATGGAGGAGGTGGTGGTGGTGG---ATA 344
|||| || |||||| |||||||||||| || |||||||| |||||||||||||| |||
Sbjct 240 TTTCAACTACTATGTACCTGGAGGCGATAACAATGGAGGTGGTGGTGGTGGTGGTGGATA 299
Query 345 ACTCAAAAGAAATCGCGAAAA 365
|||||||| |||||| |||||
Sbjct 300 ACTCAAAACAAATCG-GAAAA 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20031684225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5