BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45170.1 Length=688 Score E Sequences producing significant alignments: (Bits) Value Ahg897304 jgi|Araly1|897304|Al_scaffold_0005_1270 525 2e-148 > Ahg897304 jgi|Araly1|897304|Al_scaffold_0005_1270 Length=615 Score = 525 bits (284), Expect = 2e-148 Identities = 481/569 (85%), Gaps = 41/569 (7%) Strand=Plus/Plus Query 21 AGAAGAAGATCTTGGAACTGCCATGCAGAAAATTCCCATCCCTGTCAACGTATTCGATAA 80 |||||||||| ||||||||||||||||| || |||| || |||||||||| | ||||||| Sbjct 33 AGAAGAAGATTTTGGAACTGCCATGCAGCAACTTCCTATACCTGTCAACGAACTCGATAA 92 Query 81 AGAACCCATGGATTTGGA-TACGGTTT-TCGGTTTTGCTGATGGAGTAAGAGAGATCATA 138 | ||||||||||||||| | |||||| | |||||||| |||| | |||||||||||||| Sbjct 93 ATTACCCATGGATTTGGACT-CGGTTTAT-GGTTTTGCGGATGAATTAAGAGAGATCATA 150 Query 139 GAAGATTCCAATTTACTACTTGAGGAATCTCGAGAG-TT--TGA---T-------AC-AA 184 |||||||||||||||||| ||||||| |||||| || || ||| | || || Sbjct 151 GAAGATTCCAATTTACTAATTGAGGATTCTCGAAAGTTTGATGATCTTAACCACAACAAA 210 Query 185 ---A-CGA---TTCCAAACCGTCTCGAAACTTCTCAAATCTGCCAACCGCGACAAGAGGT 237 | ||| ||| ||||||||| |||||| |||| || ||||||||||||||||||| Sbjct 211 TTTATCGATGTTTCAAAACCGTCTAGAAACTCCTCAGCTCAGCCAACCGCGACAAGAGGT 270 Query 238 CGTCTTCATGCACCAAAACGATCTGGAAACAAGCGAGGAAGACAAAAAAGACT-GTCTTT 296 ||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| | || Sbjct 271 CGTTTTCATGCACCAACACGATCTAGAAACAAGCGAGGAAGAAAAAAAAGACTAAAC-TT 329 Query 297 CAAGAGTCCATCAGATCTTTTTGATTCTAAATTTGGCATTACCGACAAGAGTTGTTCACA 356 || |||||| |||||| || ||||||||||| |||||||||||||||| Sbjct 330 CACTAGTCCAGCAGATC--------TC----TTTGGCATTACAAACAAGAGTTGTTCACA 377 Query 357 TTGCGGGACGAGAAAGACTCCGCT-ATGGAGAGAAGGACCGAGAGGAGCGGGAACGCTAT 415 ||||||||||||||||||||| || |||||| |||||||||||||||||||| ||||||| Sbjct 378 TTGCGGGACGAGAAAGACTCC-CTTATGGAGGGAAGGACCGAGAGGAGCGGGTACGCTAT 436 Query 416 GTAACGCGTGCGGGATGCGATACAGGACAGGTCGGCTACTTCCCGAGTACCGCCCTGCTT 475 ||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 437 GTAACGCATGCGGAATGCGATACAGAACAGGTCGGCTACTACCCGAGTACCGTCCTGCTT 496 Query 476 CAAGTCCGGATTTCAAACCTAACGTTCACTCCAACTTTCATCGAAAGGTTATGGAAATCA 535 ||||||| ||||||| ||| ||||||||||| || |||||||| |||||||||||||||| Sbjct 497 CAAGTCCCGATTTCATACCAAACGTTCACTCGAATTTTCATCGGAAGGTTATGGAAATCA 556 Query 536 GAAGGGAGAGGAAGTCATCTCCTCCGAAT 564 ||||||||||||||||| ||||||| ||| Sbjct 557 GAAGGGAGAGGAAGTCACCTCCTCCCAAT 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25275493971 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5