BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45170.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897304 jgi|Araly1|897304|Al_scaffold_0005_1270 525 2e-148
> Ahg897304 jgi|Araly1|897304|Al_scaffold_0005_1270
Length=615
Score = 525 bits (284), Expect = 2e-148
Identities = 481/569 (85%), Gaps = 41/569 (7%)
Strand=Plus/Plus
Query 21 AGAAGAAGATCTTGGAACTGCCATGCAGAAAATTCCCATCCCTGTCAACGTATTCGATAA 80
|||||||||| ||||||||||||||||| || |||| || |||||||||| | |||||||
Sbjct 33 AGAAGAAGATTTTGGAACTGCCATGCAGCAACTTCCTATACCTGTCAACGAACTCGATAA 92
Query 81 AGAACCCATGGATTTGGA-TACGGTTT-TCGGTTTTGCTGATGGAGTAAGAGAGATCATA 138
| ||||||||||||||| | |||||| | |||||||| |||| | ||||||||||||||
Sbjct 93 ATTACCCATGGATTTGGACT-CGGTTTAT-GGTTTTGCGGATGAATTAAGAGAGATCATA 150
Query 139 GAAGATTCCAATTTACTACTTGAGGAATCTCGAGAG-TT--TGA---T-------AC-AA 184
|||||||||||||||||| ||||||| |||||| || || ||| | || ||
Sbjct 151 GAAGATTCCAATTTACTAATTGAGGATTCTCGAAAGTTTGATGATCTTAACCACAACAAA 210
Query 185 ---A-CGA---TTCCAAACCGTCTCGAAACTTCTCAAATCTGCCAACCGCGACAAGAGGT 237
| ||| ||| ||||||||| |||||| |||| || |||||||||||||||||||
Sbjct 211 TTTATCGATGTTTCAAAACCGTCTAGAAACTCCTCAGCTCAGCCAACCGCGACAAGAGGT 270
Query 238 CGTCTTCATGCACCAAAACGATCTGGAAACAAGCGAGGAAGACAAAAAAGACT-GTCTTT 296
||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| | ||
Sbjct 271 CGTTTTCATGCACCAACACGATCTAGAAACAAGCGAGGAAGAAAAAAAAGACTAAAC-TT 329
Query 297 CAAGAGTCCATCAGATCTTTTTGATTCTAAATTTGGCATTACCGACAAGAGTTGTTCACA 356
|| |||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 330 CACTAGTCCAGCAGATC--------TC----TTTGGCATTACAAACAAGAGTTGTTCACA 377
Query 357 TTGCGGGACGAGAAAGACTCCGCT-ATGGAGAGAAGGACCGAGAGGAGCGGGAACGCTAT 415
||||||||||||||||||||| || |||||| |||||||||||||||||||| |||||||
Sbjct 378 TTGCGGGACGAGAAAGACTCC-CTTATGGAGGGAAGGACCGAGAGGAGCGGGTACGCTAT 436
Query 416 GTAACGCGTGCGGGATGCGATACAGGACAGGTCGGCTACTTCCCGAGTACCGCCCTGCTT 475
||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 437 GTAACGCATGCGGAATGCGATACAGAACAGGTCGGCTACTACCCGAGTACCGTCCTGCTT 496
Query 476 CAAGTCCGGATTTCAAACCTAACGTTCACTCCAACTTTCATCGAAAGGTTATGGAAATCA 535
||||||| ||||||| ||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 497 CAAGTCCCGATTTCATACCAAACGTTCACTCGAATTTTCATCGGAAGGTTATGGAAATCA 556
Query 536 GAAGGGAGAGGAAGTCATCTCCTCCGAAT 564
||||||||||||||||| ||||||| |||
Sbjct 557 GAAGGGAGAGGAAGTCACCTCCTCCCAAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5