BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45180.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937179 jgi|Araly1|937179|scaffold_501370.1                        311    1e-84


> Ahg937179 jgi|Araly1|937179|scaffold_501370.1
Length=266

 Score =  311 bits (168),  Expect = 1e-84
 Identities = 205/223 (92%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  1    ATGATAGAGGTGGTGCTTAATGATCGGCTTGGGAAGAA-GGTGAGAGTGAAGTGCAACGA  59
            |||||||||||||||||||| |||||||| | ||| ||  || || ||||||||||||||
Sbjct  21   ATGATAGAGGTGGTGCTTAACGATCGGCTAGAGAA-AACAGTTAGGGTGAAGTGCAACGA  79

Query  60   GGAAGACACCATCGGAGATCTCAAGAAGCTTGTGGCGGCCCAAACTGGAACCCGACCCGA  119
            ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  80   GGACGACACCATTGGAGATCTCAAGAAGCTTGTGGCAGCCCAAACTGGAACCCGACCCGA  139

Query  120  AAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCCCTCTCAAGGACTA  179
             ||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct  140  TAAGATTCGGATCCAAAAATGGTACAACATCTACAAGGATCATATCACTCTAAACGATTA  199

Query  180  CGAAATCCATGACGGCATGGGTCTCGAGCTCTACTACAACTAA  222
             ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  200  TGAAATCCATGATGGCATGGGTCTCGAGCTCTACTACAACTAA  242



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5