BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45200.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937181 jgi|Araly1|937181|scaffold_501372.1 1260 0.0
Ahg925324 jgi|Araly1|925324|scaffold_200885.1 435 4e-121
> Ahg937181 jgi|Araly1|937181|scaffold_501372.1
Length=935
Score = 1260 bits (682), Expect = 0.0
Identities = 834/906 (92%), Gaps = 15/906 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGACAGAGAGATATTC 60
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 22 ATGTCTCGTCTCAACGCACAAGAACTACATGTTTTCCATGCTCAAGATAGAGATATATTC 81
Query 61 TCTAAATTGGTCCTCAAATTCTCAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACA 120
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 82 TCTAAATTGGTCCTCAAATTCTTAAGACCTCCGGCTGAGTCACTTCTTGTCATGGCCACA 141
Query 121 TGGCTTTGGCTCGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCACA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 142 TGGCTTTGGCTTGAGGACTTTGGCTTTGAAAACATTTTCTCAATCATCCTCACTCTCCCA 201
Query 181 GATCCACTCATTGCCGGTCTTGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTA 240
||||||||||||| ||||||||| |||| |||||||||||||||| |||||||| |||
Sbjct 202 GATCCACTCATTGTGGGTCTTGCTAACGAGGCTGTCTCATGCTTTCGGTGCCTTTATTTC 261
Query 241 AACAATCCCCCAATTGGCCGAATCCCTCTCACCACAAAATATC-TGAAAAAGAATATATC 299
| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 262 AGCAATCCCCCAATTGGCCGAATCCCTCTCACCGCAAAATA-CATGAAAAAGAATATATC 320
Query 300 ACTCCAAATGATCTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAAC 359
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 321 ACTCCAAACAATCTACAAAAATCGCTATAGTGCTATCACAGGAATCAAGAACTTCTTAAC 380
Query 360 CACTGTTTGTACCAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAAT 419
|||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 381 CACTGTTTGTTCCAGAATCTTTACCGACATCCTTTTACGAGTTCTTCCATCTTCTTCAAT 440
Query 420 GTCTTCCTTTGACGCAAGACTTCGCCAACCTCTTCA-AATCCCCGGGTTCCCTCATCCGA 478
| ||||||||||| |||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct 441 GCCTTCCTTTGACACAAGACTTCGCCAACCTCGT-AGAATCCCCGGTTTCCCTCATCCGA 499
Query 479 TTTTTGGAAGCATCAATGTGATGCCTAATGAAGTTGATAGGGATAATTTCTCCAACAAGA 538
|||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 500 TTTTCGGAAGCATCAACGTGATGCCTATTGAAGTTGATAGAGATAATTTCTCCAACAA-- 557
Query 539 ACAACAACTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 598
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 558 -C------TTATTTTTCATCCCACATGGTCTATGGGGCTGGAACGCTAATTGCATCGCCA 610
Query 599 CTGAGAACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTG 658
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 611 CTGAGAATGATCGGTCCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCAG 670
Query 659 AGATAATTGAGCTCTTTACCAAGGAGTATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 718
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 671 AGATATTTGAGCTCTTTACCAAGGAATATGGAGAAAATTGTGTTGAGGGAGTTTACATGC 730
Query 719 AACATGACAACAAAAGATCTTTCAATGCAAACGCAAATAGGAGCTGCGAGCAACAATCAC 778
| ||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 731 AGCATGACAACAAAAAATCTCCCAATGCAAACGCGAATAGGAGCTGCGGGCAACAATCAT 790
Query 779 TATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAGC 838
|||| |||||||||||| ||||||||||| |||||||||||||||||||||| | ||| |
Sbjct 791 TATTCGCGAGGCTTGTCATGGACTCGGTTGCTACCGTGGACCGCGTACTCGACGGCGATC 850
Query 839 AGAAAAAAGAGCTT-ATGATTTACGGAAAGAACATTTGGGCTCGTAAGTATGATAAGAGG 897
||| |||||||||| | ||| |||||||||||||||||||||||||||| || ||||||
Sbjct 851 AGAGAAAAGAGCTTGA-GATAAACGGAAAGAACATTTGGGCTCGTAAGTACGAGAAGAGG 909
Query 898 GAGTGA 903
||||||
Sbjct 910 GAGTGA 915
> Ahg925324 jgi|Araly1|925324|scaffold_200885.1
Length=952
Score = 435 bits (235), Expect = 4e-121
Identities = 682/891 (77%), Gaps = 57/891 (6%)
Strand=Plus/Plus
Query 23 AACTACATGTTTTCCATGCTCAAGACAGAGAGATATTCTCTAAATTGGTCCTCAAATTCT 82
||||||||| ||||||||| |||||||||||||| ||||||||| | ||||| ||||| |
Sbjct 43 AACTACATGCTTTCCATGCACAAGACAGAGAGATTTTCTCTAAACTAGTCCTAAAATTTT 102
Query 83 CAAGGCCTCCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGCTCGAGGACTTTG 142
||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 103 TAAGACCACCAGCTGAGTCACTTCTTGTCATGGCCACATGGCTTTGGCTTGAAGACTTTG 162
Query 143 GCTTTGAAAACATTTTCTCAATCATCCTCACTCTC-A-CAGATCCACTCATTGCCGGTCT 200
|||| | |||||||||||| |||||| || | | | | |||| ||| |||| | |||
Sbjct 163 GCTTCGGAAACATTTTCTCCATCATCA-CAATTTTTAGC-GATCTACTAATTGTAGATCT 220
Query 201 TGCTTACGAAGCTGTCTCATGCTTTCAGTGCCTTTCTTTAAACAATCCCCCAATTG--G- 257
||| |||| ||||||| ||||| ||||||||| | || | ||||||| || |
Sbjct 221 CGCTAACGAGGCTGTCTTGTGCTTCCAGTGCCTTGAGTCCGACCAGCCCCCAAATGATGT 280
Query 258 C---C-GAATCCCTCTCACC-ACAAAATATC-TGAAAAAGAATATATCACTCCAAATGA- 310
| | || ||||||||||| | | | | || |||||||| | ||||| || ||||| |
Sbjct 281 CAATCAGA-TCCCTCTCACCGAGAGA-T-TCATGAAAAAGGACATATCCCTTCAAAT-AC 336
Query 311 TCTACAAAAATCGATATAGTGCTATCACAGGAATCAAAAACTTCTTAACCACTGTTTGTA 370
|| ||||| ||||||| | ||| || |||||||| |||||||| ||||||||| |||||
Sbjct 337 TCCACAAACATCGATACACTGCCATTACAGGAATAAAAAACTTTTTAACCACTATTTGTT 396
Query 371 C-CAGAATCTTCACCGACATCCTTCTACGAGTTCTTCCACCTTCTTCAATG-TC-TTCCT 427
| | |||| ||| | || ||||||| |||||||||||| ||||| ||| | || ||| |
Sbjct 397 CTC-GAATTTTCTCTGATATCCTTCAACGAGTTCTTCCGCCTTCATCA-TCCTCATTCAT 454
Query 428 TTGACGCAAGACTTCGCCAACCTCTTCAA-ATCCCCGGGTTCCCTCATCCGATTTTTGGA 486
|| ||| | | || || ||||| || || ||||| ||||||||||||| ||||||
Sbjct 455 C--AC-CAAAA-TCCGTCACCCTCT-CATCATTCCCGGTTTCCCTCATCCGACTTTTGGG 509
Query 487 AGCATCAATGTGAT-GCCTAATGAAGTTGATAGGGATAAT-TTCTCCAACAAGAACAACA 544
||||||||||| || |||| ||| |||| ||||||||| |||| |||| || |
Sbjct 510 AGCATCAATGT-ATTGCCTGATGTCGTTGCCAGGGATAATCTTCTA-AACAC-AA-ATTT 565
Query 545 ACTTATTTTTCATCCCAAATGGTCTATGGGGCTGGAACGCTAA-T-TGCATCGCCACTGA 602
| || |||||| || | |||||| |||||||||||||||| | || |||| |||||
Sbjct 566 ATTTCTTTTTCCTC--A--TGGTCTTTGGGGCTGGAACGCTACCTATG--TCGCGACTGA 619
Query 603 GAACGATCGGACCTTGTTTTTAACATTTTCTCGTGGTTATCCAGTGACTCATGCTGAGAT 662
|| || ||||| | ||| |||| ||||||||||||| ||| ||| | || |||||| |
Sbjct 620 TAAAGAACGGACGGTATTTCTAACGTTTTCTCGTGGTTTTCCCGTGTCACAAGCTGAGGT 679
Query 663 A-ATTGAGCTCTTTACCAAGG-AGTATGGAGAAAATTGTGTTGAGGGAGTTTACATGCAA 720
|| | ||||| ||| || | |||||||||||||||||||| | ||||||||||||
Sbjct 680 GTATC-ATCTCTTCACCGAGATA-TATGGAGAAAATTGTGTTGAAAGCGTTTACATGCAA 737
Query 721 CATGACAACAAA-AGATCTTTCAATGCAAACGCAAATAGGA--GCTGCGAGCAACAATCA 777
| || | || || | ||| | |||| | ||| | | | | | |||||||| ||
Sbjct 738 GAGGA-AGGTGGTAGTTCCTCCAACGAAAACACCAATTGCAATGGT-C-AGCAACAACCA 794
Query 778 CTATTTGCGAGGCTTGTCTTGGACTCGGTTACTACCGTGGACCGCGTACTCGATGACGAG 837
|||| |||| | | ||||||||||||||| |||||| || || ||||| | | ||||
Sbjct 795 CTATACGCGAAGATGGTCTTGGACTCGGTTGTTACCGTAGATCGTATACTCAACGGCGAG 854
Query 838 CAGAAAAAAGAGCTTAT-G-ATTTACGGAAAGAACATTTGGGCTCGTAAGT 886
| |||||| || | || | || |||||||| | ||||||||||||||||
Sbjct 855 GAAAAAAAAAAG-T-ATCGGATCAACGGAAAGCATATTTGGGCTCGTAAGT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5