BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45210.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1 878 0.0
> Ahg484911 jgi|Araly1|484911|fgenesh2_kg.5__903__AT3G45210.1
Length=666
Score = 878 bits (475), Expect = 0.0
Identities = 618/682 (91%), Gaps = 29/682 (4%)
Strand=Plus/Plus
Query 29 CTTCTTCTCCTTCAATGGCGACAG-CGACGAGAAAGAGCTATTACCAACGCCCGAGTCAT 87
|||||||||| |||||||| || | |||||||||| |||||||||||||| |||||||||
Sbjct 1 CTTCTTCTCCATCAATGGCAAC-GACGACGAGAAAAAGCTATTACCAACGGCCGAGTCAT 59
Query 88 CGCTTCCTTCCAACAGATCGGACTTACAACGTCACCGGAGATTCAGAATTCGAGTTCGAC 147
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 60 CGCTTCCTTCCAACAGATCGGACTTACCACATCACCGGAGATTCAGAATTCGAGTTCGAC 119
Query 148 GAGTCTGATCTATACTCTAACCGCTCCGATTCGCCTGAATTTCGTCGGAAACTCATCACA 207
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GAGTCCGATCTATACTCTACCCGCTCCGATTCGCCTGATTTTCGTCGGAAACTCATCACA 179
Query 208 TCAAACCGTAAATCGTCTCCGGCAACCGTAACCACCACTACAGTAGCTTCTTCACTTCCG 267
|| | |||| ||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 180 TCTAGCCGTCGATCATCTCCGGCAACCGTAACCACCACGACGGTAGCTTCTTCACTTCCG 239
Query 268 ATGAACGTACAGAACTGGTCTAAGATTCTCGGGAAAGAGAATCGGAAAAGCATCGAAAAC 327
||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 240 ATGAATGTACCGGACTGGTCTAAGATTCTCGGGAAAGAGAATCGGAGAAGCATCGATAAC 299
Query 328 GATGACGATGGCGGCGAAGGAAAATTGCCGCCGCATGAGTATTTGGCGAAGACGAGAATG 387
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATGACGACGGAGACGGTGGAAAATTGCCGCCGCATGAGTATTTGGCGAAGACGAGAATG 359
Query 388 GCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAGATATGAGTAGG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAGATATGAGTAGG 419
Query 448 GTGAGAAATGCAATTTTGGAAAAGACTGGGTTCTTAGATTAATTT-TTAAAAAGTATAA- 505
|| |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 420 GTTCGAAATGCAATTTTGGAAAAGACTGGGTTTTTAGATTAATTTCTTAAAA-GTATAAG 478
Query 506 -TTCTCttttttttgggggggTTTAGTTTTCT-TATAATAACAATTTTTACTAAATAACT 563
|||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 479 GTTCTCTTTTTTT-GGGG---TTTAGTTTTCTCT-TAATAACAATTTTTACTAAATAACT 533
Query 564 TTTGAGAAGAAGAAGCATATAATATTTTCTAGATTATGCCTTCTTTT--ACTA----AAT 617
||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 534 GGTGAGAAGAAGAAGCATATAATATTTTCTAGATTATGCCTTCTTTTTTA-TATTGTAAT 592
Query 618 AAAGTTTT-AATGTTGAGCAT-TTGAGATTATAAAATTAGTACTGTAACTAACTATTGTA 675
|||||||| ||||||||| || ||| |||||||| || |||||||||||| | | |||
Sbjct 593 AAAGTTTTTAATGTTGAGTATCTTG-GATTATAAGTTTTGTACTGTAACTA--T-T-GTA 647
Query 676 CTGCTACCAAATTCCAAATCGG 697
|| |||||||||||||||||
Sbjct 648 CT---ACCAAATTCCAAATCGG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5