BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45220.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937184 jgi|Araly1|937184|scaffold_501375.1 1842 0.0
Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1 893 0.0
> Ahg937184 jgi|Araly1|937184|scaffold_501375.1
Length=1225
Score = 1842 bits (997), Expect = 0.0
Identities = 1120/1181 (95%), Gaps = 2/1181 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTGGGAAAATCAATGGAGAATCAAACCGACGTCATGGTATTACTAGCAAAGCAT 60
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 21 ATGGAGTTGGGAAAATCAACGGAGAATCAAAACGACGTCATGGTATTACTAGCAAAGCAT 80
Query 61 GTCATCCCTACCGTTGCCAACGGCTCCAACCTTGTCTTCTCACCAATGTCAATCAACGTT 120
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 81 GTCATCGCTACCGTTGCCAACGGCTCCAACCTCGTCTTCTCACCAATGTCAATCAACATT 140
Query 121 TTGCTCTGCCTGATTGCCGCTGGTTCCAACTGCGTCACCAAAGAACAAATCTTATCATTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 TTGCTCTGCCTGATTGCCGCTGGTTCCAACTGCGTCACCAAAGAACAAATCCTATCATTC 200
Query 181 ATCATGTTACCCTCATCGGATTACCTCAACGCAGTCTTAGCGAAAACCGTATCTGTTGCC 240
||| |||||||||||||||| |||||||||| ||||| || || |||||||||||||||
Sbjct 201 CTCACGTTACCCTCATCGGATCACCTCAACGCGGTCTTGGCCAAGACCGTATCTGTTGCC 260
Query 241 TTAAATGATGGAATGGAGAGAAGTGACTTGCACTTATCTACGGCTTATGGTGTATGGATT 300
|| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 261 TTCGCTGATGGATTGGAGAGAAATGACTTGCACTTATCTACGGCTTATGGTGTATGGATT 320
Query 301 GACAAATCTTTATCCTTCAAACCTTCCTTTAAAGATCTTTTGGAGAACTCCTATAACGCT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 GACAAATCTTTATCCTTCAAGCCTTCCTTTAAAGATCTTTTGGAGAACTCCTATAACGCT 380
Query 361 ACTTGTAATCAAGTTGACTTCGCAACCAAGCCTGCTGAAGTGATTAATGAAGTGAATGCA 420
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 381 ACTTGTAGTCAAGCTGACTTCGCAACCAAACCTGCTGAAGTGATTAATGAAGTGAATACA 440
Query 421 TGGGCTGAAGTCCACACCAATGGACTCATCAAAGAGATTCTTTCAGACGATTCTATCAAG 480
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 441 TGGGCTGAAGCCCACACCAATGGACTCATCAAAGAGATTCTTTCACACGATTCTATCAAG 500
Query 481 ACTATCCGTGAAAGTATGCTAATACTTGCTAATGCAGTGTACTTCAAAGGAGCTTGGAGC 540
|||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||
Sbjct 501 ACTATCCGTGAAAGTACGCTAGTATTTGCAAATGCAGTGTACTTCAAAGGAGCTTGGAGC 560
Query 541 AAAAAATTTGATGCAAAGTTAACAAAAAGTTACGATTTTCATCTTCTTGACGGCACCATG 600
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |
Sbjct 561 AAAAAATTTGATGCAAAGTTAACAAAAAATAACGATTTCCATCTTCTTGACGGCACCACG 620
Query 601 GTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATACCTAGAATATTATGATGGTTTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 621 GTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATACCTAGAATATTATGATGGTTAC 680
Query 661 AAAGTTTTGCGTCTTCCTTATGTAGAAGATCAACGTCAATTCGCCATGTACATTTATCTT 720
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 681 AAAGTTTTGCGCCTTCCTTATGTAGAGGATCAACGTCAATTCGCCATGTACATTTATCTT 740
Query 721 CCTAATGATAGAGATGGATTACCTACTCTTCTTGAGGAAATAAGCTCCAAACCCCGATTT 780
|||||||| | |||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 741 CCTAATGACAAAGATGGATTACCTACTCTGCTTGACGAAATAAGCTCCAAACCCGGATTT 800
Query 781 CTTGATAACCATATTCCGCGCCAACGTATATTAACGGAAGCTTTCAAGA-TTCCAAAGTT 839
||||||||||||||||||||||| ||||||||| |||| | ||| || |||| |||||
Sbjct 801 CTTGATAACCATATTCCGCGCCAGCGTATATTAGTGGAACCGTTC-GGAGTTCCCAAGTT 859
Query 840 TAAGTTCTCTTTCGAGTTTAAAGCTTCAGATGTTTTGAAGGAAATGGGGCTGACTTTACC 899
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TAAGTTCTCTTTTGAATTTAAAGCTTCAGATGTTTTGAAGGAAATGGGGCTGACTTTACC 919
Query 900 ATTTACACATGGTAGTCTAACCGAGATGGTTGAGTCGCCTTCCATTCCCGAGAATCTATG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 ATTTACACATGGTAGTCTAACCGAGATGGTTGAGTCGCCTTCCATTCCCGAGAATCTATG 979
Query 960 CGTCGCTGAGAATTTGTTCGTCTCAAATGTTTTTCACAAAGCTTGCATTGAGGTGGATGA 1019
|| || |||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 980 TGTTGCCGAGAATTTGTACGTCTCAAATTTTTTTCACAAAGCTTGCATTGAGGTGGATGA 1039
Query 1020 AGAGGGAACTGAAGCTGCAGCCGTTTCTGTTGCCAGCATGACAAAGGACATGTTGTTGAT 1079
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGAGGGAACTGAAGCTGTTGCCGTTTCTGTTGCCAGCATGACAAAGGACATGTTGTTGAT 1099
Query 1080 GGGAGATTTCGTAGCTGATCATCCATTTCTATTCACAGTGAGAGAAGAGAAGAGTGGAGT 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GGGAGATTTCGTAGCTGACCATCCATTTCTATTCACAGTGAGAGAAGAGAAGAGTGGAGT 1159
Query 1140 GATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAATACATT 1180
||||||||||||||||||||||||||||||||||| |||||
Sbjct 1160 GATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAAAACATT 1200
> Ahg481380 jgi|Araly1|481380|fgenesh2_kg.4__440__AT2G25240.1
Length=1261
Score = 893 bits (483), Expect = 0.0
Identities = 975/1204 (81%), Gaps = 68/1204 (6%)
Strand=Plus/Plus
Query 1 ATGGAGTTGGGAAAATCAATGGAGAATCAAACCGACGTCATGGTATTACTAGCAAAGCAT 60
|||||||||||||||||||| ||||| |||| |||||| ||||| |||| ||||||||
Sbjct 1 ATGGAGTTGGGAAAATCAATTGAGAACCAAAACGACGTGGTGGTAAGACTAACAAAGCAT 60
Query 61 GTCATCCCTACCGTTGCCAACGGCTCCAACCTTGTCTTCTCACCAATGTCAATCAACGTT 120
|||||| ||||| ||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 61 GTCATCTCTACCATTGCCAATGGTTCCAACCTTGTCTTCTCACCAACGTCAATCAACGTT 120
Query 121 TTGCTCTGCCTGATTGCCGCTGGTTCCAA-CTGCGTCACCAAAGAACAAATCTTATCATT 179
|||||| |||| || || || |||| ||| || || ||||| ||| ||||| | |||||
Sbjct 121 TTGCTCAGCCTCATCGCGGCCGGTT-CAAGTTGTGTGACCAATGAAAAAATCCTCTCATT 179
Query 180 CATCATGTTACCCTCATCGGATTACCTCAACGCAGTCTTAGCGAAAACCGTATCTGTTGC 239
| |||||||||| ||| ||||| |||||||| |||||| || |||| | || | |
Sbjct 180 CCTCATGTTACCGTCAACGGATCACCTCAACATAGTCTTGGCCAAAATC--AT-AGACGG 236
Query 240 CTTAAATGATGGAATGGAGAGAAGTGACTTGCACTTATCTACGGCTTATGGTGTATGGAT 299
| || | ||||| |||||| |||| ||| |||| || ||||||| |||||
Sbjct 237 C------GA---CACGGAGACAAGTGATTTGCGCTTGTCTATAGCCAATGGTGTTTGGAT 287
Query 300 TGACAAATCTTTATCCTTCAAACCTTCCTTTAAAGATCTTTTGGAGAACTCCTATAACGC 359
||||| | ||| ||||| || ||||||||||||| ||||||||||| || || || ||
Sbjct 288 CGACAAGTTTTTCTCCTTGAAGCCTTCCTTTAAAGCGCTTTTGGAGAATTCTTACAAGGC 347
Query 360 TACTTGTAATCAAGTTGACTTCGCAACCAAGCCTGCTGAAGTGATTAATGAAGTGAATGC 419
|||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
Sbjct 348 TACTTGTAATCAAGTTGACTTCGCAACCAAGCCTTCTGAAGTGATTGATGAGGTGAATAC 407
Query 420 ATGGGCTGAAGTCCACACCAATGGACTCATCAAAGAGATTCTTTCA-GACGATTCTATCA 478
||||| ||||||||| || |||||||||||||| |||||||||||| | ||||||||||
Sbjct 408 ATGGGTTGAAGTCCAAACTAATGGACTCATCAAGGAGATTCTTTCACG-CGATTCTATCG 466
Query 479 AGACTATCCGT-GAAAGTATGCTAATACTTGCTAATGCAGTGTACTTCAAAGGAGCTTGG 537
| ||||||||| | | | | || | ||||| |||||||| |||||||||||||| |||
Sbjct 467 ATACTATCCGTAGCA-GCACACTCGTTCTTGCAAATGCAGTCTACTTCAAAGGAGCATGG 525
Query 538 AGCAAAAAATTTGATGCAAAGTTAACAAAAAGTTA-CGATTTTCATCTTCTTGACGGCAC 596
|||| |||||||||||||| | |||||| | || |||||||||||| |||||||| ||
Sbjct 526 AGCAGTAAATTTGATGCAAACCTGACAAAA-GATAACGATTTTCATCTGCTTGACGGTAC 584
Query 597 CAT-GGTGAAAGTCCCCTTCATGACCAATTACAAGAAGCAATACCTA-GAATATTATGAT 654
| | |||||||||||||||||||||||||||| || | || |||||| ||| | |||||
Sbjct 585 C-TCGGTGAAAGTCCCCTTCATGACCAATTACGAGGACCAGTACCTAAGAAGCT-ATGAT 642
Query 655 GGTTTCAAAGTTTTGCGTCTTCCTTATGTAGAAGATCAACGTCAATTCGCCATGTACATT 714
||||||||||||||||| || |||||| |||| |||| |||||||||| | |||||||||
Sbjct 643 GGTTTCAAAGTTTTGCGCCTCCCTTATATAGAGGATCTACGTCAATTCTCTATGTACATT 702
Query 715 TATCTTCCTAATGATAGAGATGGATTACCTACTCTTCTTGAGGAA-ATAAGCTCCAAACC 773
||||||||||| |||| ||| |||||| || |||| |||||| | ||| ||||| ||||
Sbjct 703 TATCTTCCTAACGATAAAGACGGATTAGCTGCTCTGCTTGAG-ATGATAGGCTCCGAACC 761
Query 774 CCGA-TTTCTTGATAACCATATTCCGCGCCAACGTATATTAAC-GGAAGCTTTCAAGATT 831
|| ||| | |||||||||||||||| ||| ||||||| | || |||||| |||
Sbjct 762 A-GAATTTATCGATAACCATATTCCGCTCCACCGTATATCAGTTGGT-GCTTTCCGGATC 819
Query 832 CCAAAGTTTAAGTTCTCTTTCGAGTTTAAAGCTTCAGATGTTTTGAAGGAAATGGGGCTG 891
||||||||||| ||||||||||||||||| |||||||| ||| |||| || |||||||||
Sbjct 820 CCAAAGTTTAAATTCTCTTTCGAGTTTAATGCTTCAGAAGTTCTGAAAGATATGGGGCTG 879
Query 892 ACTTTACCATTTACACA-TGG---TAGTCTAACCGAGATGGTTGAGTCGCCTTCCATTCC 947
|||| |||||||| | | ||| | || |||| ||||||||||| || |||||||
Sbjct 880 ACTTCACCATTTA-ATAATGGAGGTGGTTTAACTGAGATGGTTGATTCACCTTCCA---- 934
Query 948 CGAGAATCTATGCGTCGCTGAGAATTTGTTCGTCTCAAATGTTTTTCACAAAGCTTGCAT 1007
| | | || | |||| | | | |||||||| || |||| |||||||| ||
Sbjct 935 --A----C---G-GT-G--GAGA-TCTATACGTCTCAAGCATTCTTCATAAAGCTTGTAT 980
Query 1008 TGAGGTGGATGAAGAGGGAACTGAAGCTGCAGCCGTTTCTGTTGCCAG-CATGACAAAG- 1065
||| ||||||||||||||||| |||||||||||||| || |||| | | ||| | | |
Sbjct 981 TGAAGTGGATGAAGAGGGAACCGAAGCTGCAGCCGTCTCCGTTGGC-GTCAT-A-AT-GT 1036
Query 1066 G-ACATGTTGTTGATG-GGA----G-ATTTCGTAGCTGATCATCCATTTCTATTCACAGT 1118
| || | || | || | ||| | ||||||||||||| | ||||||||| ||||| ||
Sbjct 1037 GCACTTCTT-T-GAGGCGGAATCCGGATTTCGTAGCTGACCGTCCATTTCTGTTCACTGT 1094
Query 1119 GAGAGAAGAGAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAATACA 1178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1095 CAGAGAAGACAAGAGTGGAGTGATTTTGTTCATGGGTCAAGTTCTTGATCCTTCAAAACA 1154
Query 1179 TTAA 1182
||||
Sbjct 1155 TTAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5