BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45230.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484913 jgi|Araly1|484913|fgenesh2_kg.5__905__AT3G45230.1 822 0.0
> Ahg484913 jgi|Araly1|484913|fgenesh2_kg.5__905__AT3G45230.1
Length=604
Score = 822 bits (445), Expect = 0.0
Identities = 560/613 (91%), Gaps = 17/613 (3%)
Strand=Plus/Plus
Query 26 TCATCATCACAACTTCTCAGAGAAAGATCTCAGaaaaaaaCTTGAAAATGAAGCTCGAAT 85
||||||||||||||||||||| |||||||| | | | |||||||||||||||||||
Sbjct 1 TCATCATCACAACTTCTCAGAAAAAGATCT--G----AGATTTGAAAATGAAGCTCGAAT 54
Query 86 TCATTATTGTTGCTATGATGCTAAGT-CTCGTACTCGTCTCCGGTGAGATTTTAACTAAA 144
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 55 TCACCATTGTTGCTATGATGCTAA-TGCTCGTACTCGTCTCCGGTGAGATTTTAACTAAA 113
Query 145 TCCTCACCGGCTCCGTCACCGGATCTAGCAGATTCGCCTTTAATCCACGCATCACCACCA 204
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 114 TCCTCACCGGCTCCGTCACCGGATCTAACAGATTCGCCTTTAATCCACGCACCACCACCA 173
Query 205 TCGA-AACTCGGATCTCATAATTCTCCAGCGGAATCTCCAATTGAATACTCTTCTCCTCC 263
||| || ||||||||| | |||| |||||||||||||||| ||||||||||||||||||
Sbjct 174 CCGACAA-TCGGATCTCCTCATTCACCAGCGGAATCTCCAACTGAATACTCTTCTCCTCC 232
Query 264 AGAGCCTGAAACAGAACACTCTCCATCTCC-T----T-CTCCGGCGAATTCTCCATCGGT 317
||||||||||||| |||||||||||||||| | | |||||| ||| ||||||||| |
Sbjct 233 AGAGCCTGAAACAAAACACTCTCCATCTCCATCCCCTTCTCCGGTGAACTCTCCATCGAT 292
Query 318 TTCTCCACCATTACCGAATGATTCTCAATCTCCTTCTTCGTCTGCTTCTCCGTCTCCGTC 377
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTCTCCACCATTACCGAATGAATCTCAATCTCCTTCTTCGTCTGCTTCTCCGTCTCCGTC 352
Query 378 ACCGGAAGCTAGCGATGTGAATCACAGTGATATTACTGGGATCGAAGGGGAGAAGTTGCC 437
|| |||||||||||| |||||||||||||||||| || ||||||||||| || | |
Sbjct 353 GCCTGAAGCTAGCGATTTGAATCACAGTGATATTAAAGGAATCGAAGGGGAAAAATCATC 412
Query 438 GTCGGGAAGCGGTGGAGGAATGAGCGGCGGGAAGAAAGTTGGAGTTGCTTTTGGAGCGAT 497
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 413 GTCGGGAGGCGGTGGAGGAATGAGCGGCGGGAAGAAAGTTGGGGTTGCTTTTGGAGCGAT 472
Query 498 TGCGGCGGTTTGTGTGGTTGGAGTCGCCGGATTTGTGTACAAGAAACGGCAAGAGAATAT 557
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TGCGGCGGTGTGTGTGGTTGGAGTCGCCGGATTTGTGTACAAGAAACGGCAAGAGAATAT 532
Query 558 TCGCAGGTCTCGTTACGGTTACGCCGCCAGAGAGATTCTGTAATTagagagagagagaga 617
||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 533 TCGTAGATCTCGTTACGGTTACGCCGCCAGAGAGATTCTGTAATGAGAGA-AGAGAGAGA 591
Query 618 gaTCCAGCGAGGA 630
||||| |||||||
Sbjct 592 GATCCGGCGAGGA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5