BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45242.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937188 jgi|Araly1|937188|scaffold_501379.1 1831 0.0
Ahg950803 jgi|Araly1|950803|scaffold_802690.1 1046 0.0
> Ahg937188 jgi|Araly1|937188|scaffold_501379.1
Length=1243
Score = 1831 bits (991), Expect = 0.0
Identities = 1129/1196 (94%), Gaps = 8/1196 (1%)
Strand=Plus/Plus
Query 439 CATAAATTTTGGAGTAGATAATGTTTTGTGATAGTTTTGCATTTGCCCAAGTGATGAGTT 498
||||| |||||||||||||||||||| | ||||||||| |||||| ||||| ||||||||
Sbjct 1 CATAATTTTTGGAGTAGATAATGTTTCGCGATAGTTTTTCATTTGTCCAAGCGATGAGTT 60
Query 499 GCTTCGGGTGTTTTGGTGGCTCTGAGAGATCAAGACATTCACCAAATCCATATGATGATG 558
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GCTTCGGTTGTTTTGGTGGCTCTGAGAGATCAAGACAGTCACCAAATCCATATGATGATG 120
Query 559 ATACATATTCCCATGATAGTGGTGAAACCAGCAATCCGGGAGGAGATGATGAAGAAGGAG 618
||||||||||| ||||| ||| || |||||||||| ||||||||||||||||| | ||
Sbjct 121 ATACATATTCCAATGATGGTGATGTAACCAGCAATGTGGGAGGAGATGATGAAG-A--AG 177
Query 619 AAGAGGAAGAGGAAGTAGAGGAGCTA-AGTCGTTCCAAACGATCTGAAGAAATTTTGAAA 677
| | ||||||||||||||||||| | || |||||||| |||||||| ||||||||||||
Sbjct 178 -A-A-GAAGAGGAAGTAGAGGAGC-AGAGCCGTTCCAATCGATCTGAGGAAATTTTGAAA 233
Query 678 TGTAAACTACAAAATGGACTAGTCTGCAGGCAGTTTCCAGTCAAGGAAACTAATAAACTT 737
| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 234 TCTAAATTACAAAATGGACTAATCTGCAGGCAGTTTCCAGTGAAGGAAACTAATAAACTT 293
Query 738 ACACGCGGAGAGGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 797
| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 294 ATACGTGGAGAGGATGAAGATGGAAATAAGACAATAAATGAGTTTGTTCGTGAGCGTAAA 353
Query 798 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTCTATCGAAGCACTGTCGATGACAAGCAT 857
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 ATTGGATCTGGTAGTTATGGGAAAGTGGTTCTATATCGAAGCACTGTCGATGACAAGCAT 413
Query 858 TATGCTATTAAGGCTTTTCACAAGTCACATTTATCGAGGCTACGGGTTGCACCTTCAGAA 917
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 414 TATGCTATTAAGGCTTTTCACAAGTCATATTTATTAAAGCTACGGGTTGCACCTTCAGAA 473
Query 918 ACTGCTATGGGTGATGTTCTTCGTGAGGTTATGATTATGAAAACCCTGGAGCATCCTAAT 977
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 474 ACTGCGATGGGGGATGTTCTTCGTGAGGTTATGATTATGAAAATCCTGGAGCATCCTAAT 533
Query 978 ATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 1037
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 534 ATCGTTAATCTCATTGAGGTGATAGATGACCCTGAGTTTGATGATTTTTACATGGTTCTC 593
Query 1038 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAA 653
Query 1098 ATTACTGCTAGAAAGTACTTGCGCGATGTAGTTGCCGGCCTCATGTACCTTCATGCTCAT 1157
| || |||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 654 ACTATTGCTAGAAAGTACTTGCGCGATGTAGTTACTGGCCTCATGTACCTCCATGCTCAT 713
Query 1158 AATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGGAGAGTG 1217
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 714 AATGTAATTCATGGGGACATCAAACCGGACAATTTGCTGGTTACTAGTACCGGGAGAGTG 773
Query 1218 AAAATAGGAGATTTCAGTGTCAGCCAAGTATTCAAAGATGATGATGATCAACTCCGTAGA 1277
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 774 AAAATAGGAGATTTCAGTGTCAGCCAAGTGTTCAAGGATGATGATGATCAACTCCGTAGA 833
Query 1278 TCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 1337
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCTCCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGA 893
Query 1338 AGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATAC 1397
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 894 AGATCTGCAGACACGTGGGCAGTGGGAGTTACTTTGTATTGTATGATATTAGGACAATAC 953
Query 1398 CCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1457
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCGTTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATA 1013
Query 1458 ATACCGGAAGGACTCAATCCTCGTCTAAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1517
|| || || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1014 ATCCCAGATGGACTGAATCCTCATCTCAGGGACTTGATCGAAGGTCTCCTTTGCAAAGAT 1073
Query 1518 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGATCACAGGAGAAGAC 1577
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1074 CCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGGTCACAGGAGAAGAC 1133
Query 1578 GGGGCTATTTCGGAATACTGTTGTTGGTGCAAACGCAAAGCTGAAGAAGAAGAAGA 1633
||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1134 GGGGCTATTTCAGAATATTTTTGTTGGTGCAAACGCAAAGCTGAAGAAGAGGAAGA 1189
> Ahg950803 jgi|Araly1|950803|scaffold_802690.1
Length=1319
Score = 1046 bits (566), Expect = 0.0
Identities = 996/1200 (83%), Gaps = 43/1200 (4%)
Strand=Plus/Plus
Query 445 TTTTG-G-AGTAGATAATGTTTTGTGATAGTTTTGCATTTGCCCAAGT--GATGAGTTGC 500
||||| | ||||||| |||||| ||||||||||| ||||||| || ||| |||||
Sbjct 5 TTTTGAGAAGTAGATCATGTTTCGTGATAGTTTTTTGTTTGCCC--GTACCATGGGTTGC 62
Query 501 TTCGGGTGTTTTGGTGGC-TCT-G-AG-AGATCAAGACATTCACCAAATCCATATGATGA 556
|| || || ||||| | ||| | || ||| | |||| || || || || || |||||
Sbjct 63 TTTGGATGCTTTGG-CACTTCTGGTAGTAGAACCCGACAATCGCCTAAGCCCTACGATGA 121
Query 557 TGATACATATTCCCATGATAGTGGTGAAACCAGCAATCCGGGAGGAGATGATGAAGAAGG 616
||||||||||||| |||||||| || ||| ||| | ||| || ||| || |||||||
Sbjct 122 TGATACATATTCCTGTGATAGTGATGTAACTAGC-A-CCGCGA-GAG--GA-GAAGAAGA 175
Query 617 AGAAGAGGAAGAGGAAGTAGAGGAGCTA-AGTCGTTCCAAACGATCTGAAGAAATTTTGA 675
|||||| ||||| ||||||||| || | || || || ||||||||||| ||||||||||
Sbjct 176 AGAAGATGAAGAAGAAGTAGAGCAG-AAGAGCCGCTCTAAACGATCTGAGGAAATTTTGA 234
Query 676 AATGTAAACTACAAAATGGACTAGTCTGCAGGCAGTTTCCAGTCAAG-GAAACTAATAAA 734
||| || | || | |||||| || |||||||||| ||||||| || ||||||||| ||
Sbjct 235 AATATAGATTAGATAATGGATTAATCTGCAGGCACATTCCAGT-GAGAGAAACTAATGAA 293
Query 735 CTTACACGCGGAGAGGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTG-AGCG 793
|||| ||| |||||||||||| |||| ||||||| || ||||||| |||||| | | |
Sbjct 294 CTTATACGTGGAGAGGATGAAAATGGTGACAAGACTATCAATGAGTATGTTCGCGTA-TG 352
Query 794 TAAAATTGGATCTGGTAGTTATGGGAAAGTGGTTCTCTATCGAAGCACTG-TCGATGACA 852
|||||||||| ||||||| ||||| ||||||||| | ||||||||||| | | || | |
Sbjct 353 TAAAATTGGAGCTGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCAC-GTTAGACGGCC 411
Query 853 AGCATTATGCTATTAAGGCTTTTCACAAGTCACATTTATCGAGGCTACGGGTTGCACCTT 912
|| |||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 412 AGTATTATGCTATCAAGGCATTTCACAAGTCACATTTATTAAGGCTAAGGGTTGCACCTT 471
Query 913 CAGAAACTGCTATGGGTGATGTTCTTCGTGAGGTTATGATTATGAAAACCCTGGAGCATC 972
|||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 472 CAGAGACTGCTATGAGTGATGTTCTTCGAGAGGTTATGATTATGAAAATTTTGGAGCATC 531
Query 973 CTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGG 1032
|||| ||||| || |||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 532 CTAACATCGTGAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGG 591
Query 1033 TTCTCGAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCG 1092
|||||||||| |||||||| ||||||| ||||| | ||||||||| || ||||||||||
Sbjct 592 TTCTCGAATACGTTGATGGGAAATGGGTGTATGACGGTTCTGGACCGCCAGGTGCTCTCG 651
Query 1093 GAGA-AATTACTGCTAGAAAGTACTTGCGCGATGTAGTTGCCGGCCTCATGTACCTTCAT 1151
|||| || |||||||||||||| ||||| ||| ||||| | ||||| ||||| ||||||
Sbjct 652 GAGAGAA-AACTGCTAGAAAGTATTTGCGGGATATAGTTACTGGCCTGATGTATCTTCAT 710
Query 1152 GCTCATAATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGG 1211
|||||| |||||||||| || ||||| ||||| |||||||| ||||||||||||| |||
Sbjct 711 GCTCATGATGTAATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGT 770
Query 1212 AGAGTGAAAATAGGAGATTTCAGTGTCAGCCAAGTATTCAAAGATGATGATGATCAACTC 1271
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 771 ACAGTGAAGATAGGAGATTTCAGTGTCAGCCAAGTATTCAAGGATGATGATGATCAACTG 830
Query 1272 CGTAGATCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAG-----G-TATA 1325
||| |||| ||||| ||||| ||||| ||||| |||||||||||||||| | ||||
Sbjct 831 CGTCGATCTCCCGGGACTCCAGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATA 890
Query 1326 ACATACAGTGGAAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATT 1385
|| || ||||| ||| |||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 891 ACGTATAGTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACTTTGTATTGTATGATA 950
Query 1386 TTAGGACAATACCCATTTCTGG-GTGATACACTTCAAGATACTTATGACAAGATTGTTCA 1444
|| ||||||||||| ||||| | | ||||| ||||| || || || |||||||||||| |
Sbjct 951 TTGGGACAATACCCGTTTCTTGCG-GATACTCTTCAGGACACGTACGACAAGATTGTTAA 1009
Query 1445 CAACCCGT-TGATAATACCGGAAGGACTCAATCCTCGTCTAAGGGACTTGATCGAAGGTC 1503
|||||| | ||||||| ||||| ||||| ||||||| ||| || || |||||||||||||
Sbjct 1010 CAACCC-TCTGATAATCCCGGATGGACTGAATCCTCTTCTTAGAGATTTGATCGAAGGTC 1068
Query 1504 TCCTTTGCAAAGATCCAAACCAGAGGATGACGTTGAA-AGCTGTGGCGGAGCATCCATGG 1562
|||||||||||||||| | |||||| ||||| |||| | |||| ||||||||||||||
Sbjct 1069 TCCTTTGCAAAGATCCGAGCCAGAGAATGACACTGAAGAA-TGTGTCGGAGCATCCATGG 1127
Query 1563 ATCACAGGAGAAGACGGGGCTATTTCG--GAATACTGTTGTTGGTGCAAACGCAAAGCTG 1620
||| |||||||||||| | | || || || | |||||||||||||||||| ||||
Sbjct 1128 GTCATTGGAGAAGACGGG-C-ACGTCCCTGAGTATTTTTGTTGGTGCAAACGCAATGCTG 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5