BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45243.1
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937190 jgi|Araly1|937190|scaffold_501381.1 440 3e-123
Ahg937191 jgi|Araly1|937191|scaffold_501382.1 263 7e-70
> Ahg937190 jgi|Araly1|937190|scaffold_501381.1
Length=394
Score = 440 bits (238), Expect = 3e-123
Identities = 322/360 (89%), Gaps = 15/360 (4%)
Strand=Plus/Plus
Query 1 ATGCAAAGAATGTGGGTGACGATCATGTTAGCTTTGAT-A--GTACTATCAATATCTATA 57
|||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||
Sbjct 21 ATGCAAAGAATGTGGGAAACGATCATATTAGCTTTGATAATGGTACTATCAATATCTATA 80
Query 58 CAAACAAAGGGAAATGAGAAAGTAAATGATCTTGCTCGTGCTCCCTCGTT-GACACTAGC 116
|||||| |||||||||||||||||||||||||||| |||||||| |||| | |||| ||
Sbjct 81 CAAACACAGGGAAATGAGAAAGTAAATGATCTTGCCCGTGCTCCATCGTCCG-CACTCGC 139
Query 117 ACCTCAATCAGAGAATGGAGTATTGCCTAAGCCTCTACCTTGTTTAAACGACTTTAAACT 176
||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||
Sbjct 140 ACCTCAATCCGAGAATGGAGTATTGCCTAAGCCTATACCTTGTTTAAACGACCT-AA-CT 197
Query 177 AA--TTTCAAATTGTACAAAAGCAGTGAAGCATTTCCAAATCAAAAGGGTCACAAAAAAC 234
|| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 198 AAAATTTCGAATTGTACAAATGCAGTGAAACATTTCCAAATCAAAAGGGTCACAAAAAGC 257
Query 235 TGTTGTATCATCCTACTCAATCTTCCAGAA-GATTGTTTTGGTCGTTTATTCGCCATGAA 293
||||||||||||||||||| |||||| ||| |||||||| |||||||||||||| |||
Sbjct 258 TGTTGTATCATCCTACTCAGTCTTCC-GAACGATTGTTTCGGTCGTTTATTCGCTATGC- 315
Query 294 G-TGGATCTATCGTACTGTCCTTACGATTG-CTTGCAAAGCACTAGGTTACATTAAATAA 351
| |||||||||| |||| |||| ||| ||| || ||||||||||||||||||||||||||
Sbjct 316 GCTGGATCTATCATACTATCCTGACGGTTGTCT-GCAAAGCACTAGGTTACATTAAATAA 374
> Ahg937191 jgi|Araly1|937191|scaffold_501382.1
Length=392
Score = 263 bits (142), Expect = 7e-70
Identities = 292/360 (81%), Gaps = 27/360 (8%)
Strand=Plus/Plus
Query 1 ATGCAAAGAATGTGGG-TGACGATCATGTTAGCTTTG--A-TAGTACTATCAATATCTAT 56
|||||||||||||||| | |||||| ||||||||||| | |||||||||||||||||||
Sbjct 21 ATGCAAAGAATGTGGGCT-ACGATCGTGTTAGCTTTGATAGTAGTACTATCAATATCTAT 79
Query 57 ACAAACAAAGGGAAATGAGAAA-GTAAATGATCTTGCTCG-TGCTCCCTCGT-TGACACT 113
|||||||||| | ||||||||| | ||||||| |||| || | |||| |||| || ||||
Sbjct 80 ACAAACAAAGAGTAATGAGAAAAG-AAATGATATTGC-CGGTCCTCCATCGTCTG-CACT 136
Query 114 AGCACCTCAATCAGAGAATGGAGT-ATTGCCTAAGCCT-CTACCTTGTTTAAACGACTTT 171
|||||||||||||||||| || || ||| ||||| ||| | | ||||||| ||| | |
Sbjct 137 AGCACCTCAATCAGAGAACGG-GTTATTACCTAATCCTAC-ATCTTGTTTGGCCGA-TGT 193
Query 172 AAA--CTAATTTCAAATTGTACAAAAGCAGTGAAGCATTTCCAAA-TCAAAAGGGTCACA 228
||| | |||| | |||||| |||||||||||| | ||| ||| |||||| ||||||
Sbjct 194 AAAAAC-AATTCCGAATTGTGTAAAAGCAGTGAAACGCTTC-AAACTCAAAAATGTCACA 251
Query 229 AA-AAACTGTTGTATCATCCTACTCAATCTTCCAGAAGATTGTTTTGG-TCGTTTATTCG 286
|| ||| |||||| |||||||||| |||||||| |||||||||||||| | ||| ||
Sbjct 252 AAGAAA-TGTTGTGTCATCCTACTAAATCTTCCGGAAGATTGTTTTGGATA-TTTGTTT- 308
Query 287 CC-ATGAAGTGGATCTATCGTACTGTCCTTACGATTGCTTGCAAAGCACTAGGTTACATT 345
|| || | |||||||||||| | | |||| |||||| |||||| ||||||| |||||
Sbjct 309 CCTATTCATTGGATCTATCGTTTTTTGCTTAAGATTGCCTGCAAAATACTAGGTCACATT 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12476877603
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5