BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45245.1

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937191 jgi|Araly1|937191|scaffold_501382.1                        477    2e-134


> Ahg937191 jgi|Araly1|937191|scaffold_501382.1
Length=392

 Score =  477 bits (258),  Expect = 2e-134
 Identities = 320/351 (91%), Gaps = 0/351 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAAGAATGTGGGCGACGTTCATGCTAGCTTTGATAATTTTACTAACAACATCCATA  60
            ||| ||||||||||||| ||| || || ||||||||||| |  ||||| ||| ||| |||
Sbjct  21   ATGCAAAGAATGTGGGCTACGATCGTGTTAGCTTTGATAGTAGTACTATCAATATCTATA  80

Query  61   CAAGCAAAGGGTAATGAGAAAGGAAATGATATTGCCGGTGCTCCATCGCCTACATTAGCA  120
            ||| ||||| ||||||||||| ||||||||||||||||| |||||||| || || |||||
Sbjct  81   CAAACAAAGAGTAATGAGAAAAGAAATGATATTGCCGGTCCTCCATCGTCTGCACTAGCA  140

Query  121  CCTCAATCAGAGAATGGATTATTACCTAATCCTGCATCTTGTTTGGCCGACGTAAAAACA  180
            |||||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||
Sbjct  141  CCTCAATCAGAGAACGGGTTATTACCTAATCCTACATCTTGTTTGGCCGATGTAAAAACA  200

Query  181  ATTCCGAATTGTGTAAAAGCAGTGAAGCGCTTCAAACTCAGAAATGTCACAAAGAAATGT  240
            |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  201  ATTCCGAATTGTGTAAAAGCAGTGAAACGCTTCAAACTCAAAAATGTCACAAAGAAATGT  260

Query  241  TGTGTCATCCTACTTTATCTTCCGGAAGATTGTTTCGGATATTTGTTTCCTGTTCGTTGG  300
            ||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct  261  TGTGTCATCCTACTAAATCTTCCGGAAGATTGTTTTGGATATTTGTTTCCTATTCATTGG  320

Query  301  ATCTATCGTATTCTGCTTAAGATTGCCTGCAAAATACTAGGTCACATTTGA  351
            ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  321  ATCTATCGTTTTTTGCTTAAGATTGCCTGCAAAATACTAGGTCACATTTGA  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12476877603


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5