BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45248.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937192 jgi|Araly1|937192|scaffold_501383.1                        438    1e-122


> Ahg937192 jgi|Araly1|937192|scaffold_501383.1
Length=391

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 307/341 (90%), Gaps = 3/341 (1%)
 Strand=Plus/Plus

Query  1    ATGCAAAAAATGTTGAATACGATCATGATACCTTTGATTATCATGCTTTCAATATTTATA  60
            |||||||| ||||||  || || ||||||| ||||||||||||| || ||||||||||||
Sbjct  12   ATGCAAAACATGTTGGCTATGAGCATGATAGCTTTGATTATCATCCTATCAATATTTATA  71

Query  61   CAAACAAAAGGAAATGATCTTGCACCAATTCCATCGTCGGTATCACCAGAACCTCAATCA  120
            |||||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||||
Sbjct  72   CAAACAAAAGGAAATGATCTTGCACCGATTCCGTCGTCGATAGCACCAGAACCACAATCA  131

Query  121  GAGAACCAATTCTTTCTTGACCCACTAACTTGTATTCACGATGTGAAAAAGGTTCCAAAG  180
            || ||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||
Sbjct  132  GATAACCAATTCTTTCTTGATCCAATAACTTGTATTCACGATGTGAAAACGATTCCAAAG  191

Query  181  TGTATGGACGCAGTGTTGCACTTCCGATTCAAACAGGTCACAAAGAAGTGTTGTTATGTC  240
            |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| |||| |
Sbjct  192  TGTATGGATGCTGTGTTGCACTTTCGATTCAAGCAGGTCACAAAAAAGTGTTGCTATGCC  251

Query  241  ATATTCTCTCTTCCCGAAAGTTGCTTT-GGGTTTTTGTTTCCTATTCCTTATCTCTACCA  299
            ||  ||||||||||||||||||| ||| ||| | |||||||||||||||||| |||||||
Sbjct  252  ATGCTCTCTCTTCCCGAAAGTTG-TTTCGGGGTATTGTTTCCTATTCCTTATGTCTACCA  310

Query  300  TCCTCTTCTTAAGGCTGCTTGCAAA-TTACTTACTCACCAT  339
            || |||||||||||||||||||||| |||||||||||||||
Sbjct  311  TCTTCTTCTTAAGGCTGCTTGCAAAATTACTTACTCACCAT  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5