BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45252.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484921 jgi|Araly1|484921|fgenesh2_kg.5__913__AT3G45252.1 377 2e-104
> Ahg484921 jgi|Araly1|484921|fgenesh2_kg.5__913__AT3G45252.1
Length=279
Score = 377 bits (204), Expect = 2e-104
Identities = 257/282 (91%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 1 ATGCAAAGAA-AGTTGGCAATGAACATGATAGCTTTGATTATCATGCTATCAATATTTAC 59
||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAATAATA-TTGGCGATGAACATGATAGCTTTGATTATCATGCTATCAATATTTAT 59
Query 60 ACAAACAACAGGAAATGATCTTGCACCTGCTCCACACCC-GACAATACCTTGTCTTGACA 118
||||||| |||||||||||||||||||||||||| ||| |||| |||||||||| ||
Sbjct 60 ACAAACATCAGGAAATGATCTTGCACCTGCTCCAT-CCCAGACATTACCTTGTCTGGATG 118
Query 119 ACGTGAAAACAATTCCAAATTGTGTAAAAGCTGTGTTTCACTTCAAGTTCAAAGAGATCA 178
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 119 ACGTGAAAACAATTCCAAATTGTGTAAAAGCAGTGTTTCACTTCAAATTCAAAGAGGTCA 178
Query 179 CAGAGACGTGTTGCACTATTCTACTTACTCTTCCCGATGATTGTTTTGGGCTTTTGTTTC 238
||||||||||||||||||| || || || ||||||||||||||||| ||| |||||||||
Sbjct 179 CAGAGACGTGTTGCACTATCCTTCTCACCCTTCCCGATGATTGTTTCGGGTTTTTGTTTC 238
Query 239 CTATTCCTCGTGTGTACCATTTTCTTCTTA-GTTCTGCTTGC 279
||||||||||||| |||||||||||||||| || ||||||||
Sbjct 239 CTATTCCTCGTGTCTACCATTTTCTTCTTAAGT-CTGCTTGC 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5