BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45275.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937196 jgi|Araly1|937196|scaffold_501387.1                        460    2e-129


> Ahg937196 jgi|Araly1|937196|scaffold_501387.1
Length=388

 Score =  460 bits (249),  Expect = 2e-129
 Identities = 317/349 (91%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  1    ATGAGTGGGAACAAGCGAGTGT-CTGTGTCCATCTTAGTAGTGATGATAATGATGCTATC  59
            |||||||||||||||| ||| | | ||||||||||||| |||||||||  ||||||||||
Sbjct  21   ATGAGTGGGAACAAGCAAGTATGC-GTGTCCATCTTAGCAGTGATGATTTTGATGCTATC  79

Query  60   CATTTCCCAAATTACGAAAGGTAATAATGATTTTGCCTTTGCTCCAATGTCaaaaaaaGG  119
             ||||||||||| |||||||||||||||||| |||| ||||||||| ||||  | |||||
Sbjct  80   AATTTCCCAAATCACGAAAGGTAATAATGATCTTGCGTTTGCTCCAGTGTCGGAGAAAGG  139

Query  120  ATTGTTGCCAAAACCATTGTCTTGTGCGACAGACGCAGGAAAAATTCC-GGATTGTGTAG  178
             ||||||||||||||| |||||||||||  |||||||| ||||||||| || |||||| |
Sbjct  140  GTTGTTGCCAAAACCAGTGTCTTGTGCGGGAGACGCAGAAAAAATTCCAGG-TTGTGTTG  198

Query  179  AAGCAGTGAAGCATTTCAAATTTAAAAATGTCAAAAAAGAATGTTGCTTT-ATACTACTC  237
            |||||||||||||||||||||||||||||||||||||||||||||| |||  | ||||| 
Sbjct  199  AAGCAGTGAAGCATTTCAAATTTAAAAATGTCAAAAAAGAATGTTG-TTTCGTTCTACTT  257

Query  238  GGTCTTACCGAAGACTGTTTTGGAATTTTGTTTCCTATGCGTTTTGCGTATCGTGAAATG  297
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  GGTCTTACCGAAGATTGTTTTGGAATTTTGTTTCCTATGCGTTTTGCGTATCGTGAAATG  317

Query  298  CTTAAGATTACATGTAAA-TTGATAGGCTTTAAGCCACCTTCTTATTAA  345
            |||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct  318  CTTAAGATTACATGCAAAATT-ATAGGCTTTAAGCCACCTTCTTATTAA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5