BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45280.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897321 jgi|Araly1|897321|Al_scaffold_0005_1287 1258 0.0
> Ahg897321 jgi|Araly1|897321|Al_scaffold_0005_1287
Length=804
Score = 1258 bits (681), Expect = 0.0
Identities = 764/805 (95%), Gaps = 2/805 (0%)
Strand=Plus/Plus
Query 37 ATGCCGGTCATTGATATCATCTTCAGAGTCGACGAGATTTGCAAAAAGTACGACAAGTAC 96
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGCCGGTCATTGATATTATCTTCAGAGTCGAAGAGATTTGCAAAAAGTATGACAAGTAC 60
Query 97 GACATCGACAAACACCGTGAGATCGGCGCTTCCGGCGACGATGCCTTCTCTCGCCTCTTC 156
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 GACGTCGACAAACACCGTGAGATAGGTGCTTCCGGCGACGATGCCTTCTCTCGCCTCTTC 120
Query 157 ACCTCCATTGATTCCGACATCGAAGCAGTTCTTCGTAAAGCGGAGTTGGCATCAACGGAG 216
|||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||
Sbjct 121 ACCTCCATTGATTCCGACATTGAAGCTGTTCTTCGTAAAGCCGAGTTGGCGTCGACGGAG 180
Query 217 AAGAATAGAGCTGCCGCGGTGGCTATGAATGCTGAGGTTCGAAGGACAAAAGCGCGATTA 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AAGAATAGAGCTGCCGCGGTGGCTATGAATGCTGAGGTTCGAAGGACAAAAGCGCGTTTA 240
Query 277 GCTGAAGATGTTGTTAAGCTTCAGAAACTCGCTGTTAAGAAGATTAAAGGGCTCACGAGA 336
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 241 GCTGAAGATGTTGTTAAGCTTCAGAAACTTGCTGTTAAAAAGATTAAAGGGCTTACAAGA 300
Query 337 GAGGAACGAGAATCTCGGTGCGATCTAGTTATCGCTTTAGCCGATAGGCTTCAAGCGA-T 395
||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| | |
Sbjct 301 GAGGAACGAGAATCTCGCTGTGATTTAGTTATCGCGTTAGCCGATAGGCTTCAAGC-AGT 359
Query 396 ACCTGATGGAAATGAACATGGAGCAAAACAAGCAAATAGTGATTGGGGAGGTGCTTCTGC 455
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 360 ACCTGATGGAAATGAACATGGAGCAAAACAAGCTAATAATGATTGGGGAGGTGCTTCTGC 419
Query 456 ACCTAACAAGAACATCAAGTTTGATATGTCTGAGGAAGACATGGATGATGGATTTTTCCA 515
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 ACCTAACAAGAACATCAAGTTTGATATGTCTGAGGAAGACATGCATGATGGATTTTTCCA 479
Query 516 GCAAAGTGAAGAATCCAGCCAGTTTCGACAAGAATATGAGATGAGAAGAAAGAAACAGGA 575
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 480 GCAAACTGAAGAATCTAGCCAGTTTCGACAAGAATATGAGATGAGAAAAAAGAAACAAGA 539
Query 576 TGAGGGTCTTGATATCATATCAGAAGGTTTGGATGCACTAAAGAACTTAGCGCGTGACAT 635
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGAGGGTCTTGATGTCATATCTGAAGGTTTGGATGCACTAAAGAACTTAGCGCGTGACAT 599
Query 636 GAACGAGGAACTTGACAAGCAAGTCCCATTGATGGAAGAAATGGAAACAAAGGTCGATGG 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACGAGGAACTTGACAAGCAAGTCCCATTGATGGAAGAAATGGAAACAAAGGTCGATGG 659
Query 696 AGCCACTTCGGATTTGAAGAATACCAACGTTCGGCTCAAGAAACAGCTTGTGCAGATGCG 755
||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 660 AGCAACTTCGGATTTGAAGAACACCAATGTTCGGCTCAAGAAACAGCTTGTGCAGATGAG 719
Query 756 ATCCAGCCGAAACTTCTGCATCGACATTATTCTTCTCTGTGTGATCCTTGGAATTGTCTC 815
||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 720 ATCTAGCCGCAACTTCTGCATCGACATTGTTCTTCTATGTGTGATCCTTGGAATCGTCTC 779
Query 816 TTACATTTACAATGCTCTAAACTAA 840
|||||||||||||||||||||||||
Sbjct 780 TTACATTTACAATGCTCTAAACTAA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5