BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45290.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897322 jgi|Araly1|897322|Al_scaffold_0005_1288 2222 0.0
> Ahg897322 jgi|Araly1|897322|Al_scaffold_0005_1288
Length=1515
Score = 2222 bits (1203), Expect = 0.0
Identities = 1427/1533 (93%), Gaps = 24/1533 (2%)
Strand=Plus/Plus
Query 43 ATGACGGATAAAGAAGAAAGCAACCACTCC-TCGGAGGTTGGCGCCGTCCGATCCCTCCA 101
|||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGACGGAAAAAGAAGAAAGCAACGACTCCAT-GGAGGTTGGCGCCGTCCGATCCCTCCA 59
Query 102 AGAAACTCCCACTTGGGCTCTGGCCACCGTTTGTTTCTTCTTCATCGCTGTTTCCATTTG 161
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 60 AGAAACTCCCACTTGGGCTCTGGCCACCGTTTGTTTCTTCTTCATCGCCGTTTCCA-TTG 118
Query 162 -CCTCGAGCGTCTCATCAATCTTCTATCCACTAGACTTAAGAAAAATAGAAAAACGTCGC 220
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 119 TTCTCGAGCGTCTCATCAATCTTCTCTCCACTAGACTTAAGAAAAATAGAAAAAAATCGC 178
Query 221 TACTTGAAGCTGTAGAGAAGCTCAAATCAGTTCTAATGGTGCTAGGATTCATGTCACTAA 280
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 179 TACTTGAAGCTGTAGAGAACCTCAAATCAGTTTTAATGGTGCTAGGATTCATGTCACTGA 238
Query 281 TGCTAAATGTAACTGAAGGAGAAGTTTCGAAGATATGCATTCCTATAAAGTATGCCAATC 340
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 TGCTAAATGTGACTGAAGGAGAAGTTTCGAAGATATGCATTCCCATAAAGTATGCCAATC 298
Query 341 GAATGTTGCCATGCCGTAAAACCATAAAATCACATAATGATGTTAGTGAAgatgatgatg 400
|||||||||| || ||||||||||||||||||||| ||||||||||| | | | ||||
Sbjct 299 GAATGTTGCCTTGTCGTAAAACCATAAAATCACATGATGATGTTAGT--A-A--A-GATG 352
Query 401 atgatgatgGTGATAATCATGACAACAGCTTCTTTCATCAATGCTCTTCCAAGGGTAAGA 460
||||||| || ||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 353 ATGATGA---TG---ATCGTGACAACAGCTTCTTTCATCAGTGCTCTTCCAAGGGGAAGA 406
Query 461 CTTCACTAATATCAGAAGAAGGGTTGACTCAGTTGAGTTACTTCTTCTTTGTGTTGGCAT 520
| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 407 CGTCACTAATATCACAAGAAGGGTTGACTCAGTTGAGTTTCTTCTTCTGTGTGTTGGCAT 466
Query 521 GCATGCATATTCTCTGCAATCTTGCTATTCTTCTCCTTGGAATGGCCAAGATGAGAAAAT 580
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 467 GTATGCATATTCTCTGCAATCTTGCCATTCTTCTTCTTGGAATGGCCAAGATGAGAAAAT 526
Query 581 GGAATTCGTGGGAGAAAGAGACCCAAACAGTGGAGTATCTAGCAGCAAACGATCCGAATA 640
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GGAAATCGTGGGAGAAAGAGACCCAAACAGTGGAGTATCTAGCAGCAAACGATCCGAATA 586
Query 641 GGTTTAGAATAACAAGAGATACAACATTTGCTCGACGACACCTGAGTTCATGGACTGAAA 700
|||||||||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||
Sbjct 587 GGTTTAGAATAACAAGAGATACCACATTTGCCCGACGACACTTAAGTTCTTGGACTGAAA 646
Query 701 CATC-ATTTCAACTTTGGATTAAATGTTTCTTCAGGCAATTTTACAACTCAGTGGCGAAA 759
|||| | |||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 647 CATCGA-TTCAACTTTGGATTAAATGTTTCTTCAGACAATTTTTCAACTCGGTGGCGAAA 705
Query 760 GTAGATTACCTCACACTTCGGCATGGGTTCATCTTTGCTCATGTATCGTCAAATAATGCT 819
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 706 GTCGATTACCTCACACTTCGTCATGGGTTCATCTTTGCTCATGTACCGTCAAATAATGCT 765
Query 820 TTCAACTTCCAAAACTATATACAGAGATCTTTACATGAAGATTTTAAAACTGTGGTTGGT 879
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 766 TTCAACTTCCAAAATTATATACAAAGATCTTTACATGAAGATTTTAAAACCGTGGTTGGT 825
Query 880 ATAAGTCCTTTAATGTGGCTAACTGTGGTCATCTTTATGCTCCTCGACGTTTCTGGTTGG 939
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 826 ATAAGTCCTTTAATTTGGCTAACCGTGGTCATCTTTATGCTCCTCGACGTTTATGGTTGG 885
Query 940 AGAGTATATTTTTATATGTCATTTGTGCCACTCATTATAGTTTTAGTGATCGGGACGAAA 999
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 886 AGAGTATACTTTTATATGTCATTTGTGCCACTAATTATAGTGCTAGTGATCGGGACGAAA 945
Query 1000 CTAGAGATGATAGTAGCGAAAATGGCGGTCACAATTAAGGAGAATAACAGTGTAATTAGA 1059
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 946 CTAGAGATGATAGTAGCGAAAATGGCTGTCACAATTAAGGAGAATAACAGTGTAATTAGA 1005
Query 1060 GGAACCCCTCTCGTTGAGTCAAACGACACGCATTTCTGGTTTTCCAATCCTCGTTTTCTC 1119
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1006 GGAACCCCTCTTGTTGAGCCAAACGACACGCATTTCTGGTTTTCCAATCCTCGTATCCTC 1065
Query 1120 TTAAGCATTCTACACTACACGCTGTTTCTGAACACCTTCGAGATGGCATTTATTGTGTGG 1179
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1066 ATAAGTATTCTACACTACACGCTGTTTCTGAACACCTTCGAGATGGCATTTTTTCTGTGG 1125
Query 1180 ATCACTTGGCAATTTGGGATTAACTCTTGCTACCATGATAACCAAGGGATCATAATCACA 1239
||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1126 GTCACTTGGCAACTTGGGATTAACTCTTGCTACCATGATAACCGAGGGATCATCATCACA 1185
Query 1240 CGACTTGTATTAGCGGTGACAGTCCAGTTCTTGAGCAGCTACATTACATTGCCTCTTTAT 1299
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1186 CGACTTGTATTAGCGGTGACAGTCCAGTTCTTGAGCAGCTACATAACACTGCCTCTTTAT 1245
Query 1300 GCCATTGTAACTCAGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCCATTGTAACTCAGATGGGGTCAAGCTACAAGAGAGCAATCTTAGAAGAACAACTAGCA 1305
Query 1360 AATGTGTTAAGGCACTGGCAAGGGATGGTTAGAGACAAGAAAAAGA-CTATCCAAACGCC 1418
|||||||||||||| |||||||| || |||||||||| || |||| | | | |||| ||
Sbjct 1306 AATGTGTTAAGGCAATGGCAAGGTATAGTTAGAGACAGGAGGAAGAACGAAC-AAACACC 1364
Query 1419 AGACACCGACAACAAC-AGTAACAATAACAATGGTGATATTGATTCTGGAGAAAGTCCGG 1477
||| |||||||||||| | ||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1365 AGAAACCGACAACAACGA-TAACAATAACAATGGCGATATCGATTCTGGCGAAAGTCCGG 1423
Query 1478 TTCAGACAGAAGTTGCTTCTGAGTTT-AGATTTTCGGGTAGACAATCGCCGATTTTACAA 1536
||||| |||||||||||| ||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 1424 TTCAGTCAGAAGTTGCTTATGA-TTTCAGATTTTCGGGTAGACAACCACCGATTTTACAA 1482
Query 1537 GAGATACAGATACAAGAGAAAACTGAAAGGTGA 1569
||||||| |||||||||| |||| |||||||||
Sbjct 1483 GAGATACCGATACAAGAGCAAACCGAAAGGTGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5