BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45300.1
Length=2886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937199 jgi|Araly1|937199|scaffold_501390.1 2087 0.0
Ahg897322 jgi|Araly1|897322|Al_scaffold_0005_1288 331 2e-89
> Ahg937199 jgi|Araly1|937199|scaffold_501390.1
Length=1271
Score = 2087 bits (1130), Expect = 0.0
Identities = 1226/1273 (96%), Gaps = 4/1273 (0%)
Strand=Plus/Plus
Query 178 AACTTACCGGTAATAACGAAGATATGCAGAGGTTTTTCTCCGCCAGATCGATTCTCGGTT 237
||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1 AACTTACCGGTAATATCGAAG--ATGCAGAGGTTTTTCTCCGCCAAATCGATTCTCGGTT 58
Query 238 ACGCCGTCAAGACGCGGAGGAGGTCTTTCTCTTCTCGTTCTTCGTCTCTCCTATTCGACG 297
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 59 ACGTCGTCAAGACGCGGAGGAGGTCGTTCTCTTCTCGTTCTTCGTGTCTCCTATTCGACG 118
Query 298 ACACTCAGTTACAGTTTAAAGAAAGTGTATCCAAGTTTGCGCAAGATAATATCGCTCCTC 357
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 119 ACACTCAGTTACAGTTTAAAGAAAGTGTATCAAAGTTTGCGCAAGATATTATCGCTCCTC 178
Query 358 ATGCAGAAAGAATTGATAAAACTAATTCATTTCCAAAGGATGTAAACTTATGGAAGCTAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 ATGCAGAAAGAATTGATAAAACTAATTCATTTCCAAAGGATGTAAACTTATGGAAGCAAA 238
Query 418 TGGGTGAGTTTAATCTCCATGGAATCACTGCGCCAGAGGAATATGGAGGGCTAGGTCTTG 477
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 239 TGGGGGAGTTTAATCTCCATGGAATCACTGCACCAGAGGAATATGGAGGTCTAGGTCTTG 298
Query 478 GTTACTTGTATCATTGTATTGCAATGGAGGAAATCAGTCGGGCCTCGGGTTCAGTTGCTT 537
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 299 GTTACTTGTATCATTGTATAGCAATGGAGGAAATCAGTCGGGCCTCGGGGTCAGTTGCTC 358
Query 538 TGTCTTATGGTGCTCATTCCAACCTTTGCATCAATCAATTGGTGAGGAATGGAACTGCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTCTTATGGTGCTCATTCCAACCTTTGCATCAATCAATTGGTGAGGAATGGAACTGCAG 418
Query 598 CCCAAAAGGAAAAGTATTTGCCAAAGCTTATCAGTGGAGAGCATGTTGGTGCTCTTGCAA 657
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCCAAAAGCAAAAGTATTTGCCAAAGCTTATCAGTGGAGAGCATGTTGGTGCTCTTGCAA 478
Query 658 TGAGTGAACCTAATGCTGGTTCAGATGTTGTTGGCATGAAATGCAAGGCTGAGAAGGTAG 717
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 479 TGAGTGAACCCAATGCCGGTTCAGATGTTGTCGGCATGAAATGCAAGGCTGAGAAAGTAG 538
Query 718 ATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCATCTGCTGAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 ATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCGTCTGCTGAAA 598
Query 778 CACTGGTTGTTTACGCGAAAACTGATACAAAAGCAGGTTCCAAAGGAATCACGGCTTTCA 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CACTGGTTGTTTACGCGAAAACTGATACAAAAGCAGGTTCTAAAGGAATCACGGCTTTCA 658
Query 838 TCATAGAGAAAGGAATGACCGGATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGC 897
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 TTATAGAGAAGGGAATGACCGGATTCAGTACTGCTCAGAAATTGGACAAACTGGGAATGC 718
Query 898 GGGGAAGCGATACGTGTGAGCTTGTTTTTGAGAATTGCTTCGTTCCAGAGGAAAATATTC 957
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 719 GGGGAAGCGATACGTGTGAGCTTGTTTTTGAGAATTGCTTTGTTCCAGAAGAAAACATTC 778
Query 958 TAGACAAGGAAGGAAAAGGAGTGTATGTTCTGATGTCAGGTCTGGATTTGGAGAGACTTG 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGACAAGGAAGGAAAAGGAGTGTATGTTCTGATGTCAGGTCTGGATTTGGAGAGACTTG 838
Query 1018 TTTTAGCAGCTGGGCCCTTAGGGATCATGCAGGCATGCCTCGACAATGTTCTTCCCTATA 1077
||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 839 TTTTATCAGCTGGGCCCTTAGGGATCATGCAGGCATGCCTCGACACCGTACTTCCCTATA 898
Query 1078 TTCGCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGGGTAAAG 1137
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 TTCGCCAGAGAGAACAATTTGGTCGTCCAGTTGGAGAATTTCAGTTTATACAGGGTAAAG 958
Query 1138 TTGCTGATATGTACACTGCATTACAATCTTCAAGGTCATACGTTTACTCTGTTGCGAGGG 1197
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 TTGCGGATATGTACACTGCATTACAATCTTCAAGGTCATACGTCTACTCTGTTGCGAGGG 1018
Query 1198 ACTGTGACAATGGGAAAGTTGACCCAAAGGACTGCGCCGGAACTATTCTTTGTGCGGCCG 1257
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1019 ACTGTGACAATGGGAAAGTTGACCCAAAGGACTGCGCTGGAACTATTCTATGTGCGGCCG 1078
Query 1258 AGAGAGCAACGCAGGTCGCTTTACAGGCGATACAATGTTTAGGCGGAAATGGATACATAA 1317
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1079 AGAGAGCAACGCAAGTCGCTTTACAGGCAATACAATGTTTAGGCGGAAATGGGTACATAA 1138
Query 1318 ACGAATATGCAACAGGACGCCTTCTAAGAGATGC-AAAGCTATATGAAATCGGTGCAGGG 1376
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||
Sbjct 1139 ACGAATATGCAACAGGACGCCTTCTAAGAGATGCGAAA-CTATATGAAATCGGAGCGGGG 1197
Query 1377 ACAAGCGAGATCAGAAGGATTGTCATCGGTCGCGAGCTTTTCAAAGAAGAATAGAGATAA 1436
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 ACAAGCGAGATCAGAAGGATTGTCATCGGTCGCGAGCTTTTCAAAGAACAATAGAGATAA 1257
Query 1437 GTCTGTTTTCTGC 1449
|||||||||||||
Sbjct 1258 GTCTGTTTTCTGC 1270
> Ahg897322 jgi|Araly1|897322|Al_scaffold_0005_1288
Length=1515
Score = 331 bits (179), Expect = 2e-89
Identities = 234/260 (90%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 1737 TCACCTTTCAGTTTTCTCTTGTATCTGTATCTCTTGTAAAATCGGCGATTGTCTACCCGA 1796
||||||||| |||| |||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 1515 TCACCTTTCGGTTTGCTCTTGTATCGGTATCTCTTGTAAAATCGGTGGTTGTCTACCCGA 1456
Query 1797 AAATCT-AAACTCAGAAGCAACTTCTGTCTGAACCGGACTTTCTCCAGAATCAATATCAC 1855
|||||| ||| ||| |||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 1455 AAATCTGAAA-TCATAAGCAACTTCTGACTGAACCGGACTTTCGCCAGAATCGATATCGC 1397
Query 1856 CATTGTTATTGTTACT-GTTGTTGTCGGTGTCTGGCGTTTGGATAG-TCTTTTTCTTGTC 1913
|||||||||||||| | |||||||||||| ||||| |||| | | | |||| || ||||
Sbjct 1396 CATTGTTATTGTTA-TCGTTGTTGTCGGTTTCTGGTGTTT-GTTCGTTCTTCCTCCTGTC 1339
Query 1914 TCTAACCATCCCTTGCCAGTGCCTTAACACATTTGCTAGTTGTTCTTCTAAGATTGCTCT 1973
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TCTAACTATACCTTGCCATTGCCTTAACACATTTGCTAGTTGTTCTTCTAAGATTGCTCT 1279
Query 1974 CTTGTAGCTTGACCCCATCT 1993
||||||||||||||||||||
Sbjct 1278 CTTGTAGCTTGACCCCATCT 1259
Score = 272 bits (147), Expect = 1e-71
Identities = 165/174 (95%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 2578 CAGAAACAGCGTGTAGTGTAGAATGCTTAAGAGAAAACGAGGATTGGAAAACCAGAAATG 2637
|||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||
Sbjct 1095 CAGAAACAGCGTGTAGTGTAGAATACTTATGAGGATACGAGGATTGGAAAACCAGAAATG 1036
Query 2638 CGTGTCGTTTGACTCAACGAGAGGGGTTCCTCTAATTACACTGTTATTCTCCTTAATTGT 2697
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CGTGTCGTTTGGCTCAACAAGAGGGGTTCCTCTAATTACACTGTTATTCTCCTTAATTGT 976
Query 2698 GACCGCCATTTTCGCTACTATCATCTCTAGTTTCGTCCCGATCACTAAAACTAT 2751
||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 GACAGCCATTTTCGCTACTATCATCTCTAGTTTCGTCCCGATCACTAGCACTAT 922
Score = 111 bits (60), Expect = 2e-23
Identities = 66/69 (96%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2288 CGCTAATACAAGTCGTGTGATTATGATCCCTTGGTTATCATGGTAGCAAGAGTTAATCCC 2347
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 CGCTAATACAAGTCGTGTGATGATGATCCCTCGGTTATCATGGTAGCAAGAGTTAATCCC 1141
Query 2348 AAATTGCCA 2356
|| ||||||
Sbjct 1140 AAGTTGCCA 1132
Score = 102 bits (55), Expect = 1e-20
Identities = 62/65 (95%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 2119 CTGAGTTACAATGGCATAAAGAGGCAATGTAATGTAGCTGCTCAAGAACTGGACTGTCAC 2178
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1260 CTGAGTTACAATGGCATAAAGAGGCAGTGTTATGTAGCTGCTCAAGAACTGGACTGTCAC 1201
Query 2179 C-CTA 2182
| |||
Sbjct 1200 CGCTA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108938100700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5