BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45310.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323209 jgi|Araly1|323209|fgenesh1_pm.C_scaffold_5000753 922 0.0
> Ahg323209 jgi|Araly1|323209|fgenesh1_pm.C_scaffold_5000753
Length=954
Score = 922 bits (499), Expect = 0.0
Identities = 548/572 (96%), Gaps = 2/572 (0%)
Strand=Plus/Plus
Query 555 CACAACTGGAGCTCTTGAAGCAGCTTACCATCAAGCATTTGGAAAAGGAATATCTTTGTC 614
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CACGACGGGAGCTCTTGAAGCAGCTTACCATCAAGCATTTGGAAAAGGAATATCTTTGTC 443
Query 615 CGAGCAACAGCTTGTGGATTGTGCTGGTACTTTCAATAACTTTGGTTGTCATGGTGGACT 674
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 444 TGAGCAACAGCTTGTTGATTGTGCTGGAACTTTTAATAACTTTGGTTGTCATGGCGGACT 503
Query 675 TCCTTCTCAAGCCTTTGAATACATTAAATACAACGGTGGGCTCGACACGGAGGAGGCTTA 734
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 504 TCCTTCTCAAGCCTTTGAATACATTAAATATAACGGTGGGCTCGATACAGAGGAGGCTTA 563
Query 735 TCCTTACACCGGAAAAGACGGTGGCTGCAAATTTTCAGCGAAAAACATCGGTGTACAAGT 794
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TCCTTACACGGGAAAAGACGGTGGCTGCAAATTTTCAGCGAAAAACATCGGTGTACAAGT 623
Query 795 CCGTGACTCTGTCAACATTACCCTGGGTGCAGAAGATGAACTGAAGCACGCGGTCGGGTT 854
|| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 CCTTGACTCTGTTAACATTACCCTGGGTGCAGAAGATGAACTGAAGCATGCGGTCGGGTT 683
Query 855 GGTAAGGCCAGTGAGTGTGGCGTTTGAGGTTGTACATGAA-TTCAGGTTTTATAAGAAGG 913
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 684 GGTAAGGCCAGTGAGTGTGGCGTTTGAGGTTGTACATGAATTTC-GGTTTTACAAGAAGG 742
Query 914 GAGTTTTTACTAGCAATACATGTGGTAACACTCCAATGGATGTAAACCATGCAGTGTTAG 973
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 743 GAGTTTTTACTAGTAATACTTGTGGAAACACTCCAATGGATGTAAACCATGCAGTGTTAG 802
Query 974 CAGTTGGTTATGGAGTTGAAGACGACGTCCCGTACTGGCTTATAAAGAACTCATGGGGAG 1033
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 803 CAGTTGGTTATGGAGTTGAAGACGACGTCCCGTATTGGCTTATAAAGAACTCATGGGGAG 862
Query 1034 GTGAATGGGGAGACAATGGCTACTTCAAGATGGAAATGGGAAAGAACATGTGTGGTGTTG 1093
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 863 GTGATTGGGGAGACAATGGCTATTTCAAGATGGAAATGGGAAAGAACATGTGTGGTGTTG 922
Query 1094 CAACATGTTCATCGTATCCGGTTGTAGCCTGA 1125
||||||||||||||||||||||||| ||||||
Sbjct 923 CAACATGTTCATCGTATCCGGTTGTGGCCTGA 954
Score = 510 bits (276), Expect = 9e-144
Identities = 333/361 (92%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 49 ATGTCTGTGAAACTAAACCTATCTTCCTCAATCCTAT-TGATTCTCTTTGCGGCGGCGGC 107
|||||||| ||||||| | ||||||| |||||||| | ||||| |||| |||||||| ||
Sbjct 1 ATGTCTGTAAAACTAATCTTATCTTCATCAATCCT-TCTGATTTTCTTCGCGGCGGCTGC 59
Query 108 GAGTAAAGAGATCGGATTCGATGAATCTAATCCAATCAAAATGGTCTCCGACAATCTCCA 167
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 GACTAAAGAGATCGGGTTCGATGAATCAAATCCAATCAAAATGGTCTCCGACAATCTCCA 119
Query 168 TGAGCTTGAAGACACCGTCGTCCAGATCCTAGGACAGTCCCGTCATGTTCTATCCTTTTC 227
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 120 CGAGCTTGAAGACACCGTCGTTCAGATCCTAGGCCAGTCCCGTCATGTTCTCTCCTTTTC 179
Query 228 TCGCTTCACTCACAGGTATGGGAAGAAGTATCAGAGTGTGGAGGAGATGAAGTTAAGATT 287
||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 180 TCGCTTCGCTCACCGGTATGGGAAGAAGTATCAGAGCGTGGAAGAGATGAAGTTACGATT 239
Query 288 CTCTGTTTTTAAGGAGAATCTTGATTTAATCAGATCCACTAATAAGAAAGGCTTATCCTA 347
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 240 CTCTGTTTTTAAAGAGAATCTTGATTTAATCAGATCCACTAATAAGAAAGATTTATCTTA 299
Query 348 TAAACTCTCTCTTAATCAGTTTGCTGACTTGACATGGCAAGAGTTTCAAAGATACAAGCT 407
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 300 TAAACTCTCTCTTAATCAGTTTGCTGATTTGACATGGCATGAGTTTCAAAGATATAAGCT 359
Query 408 T 408
|
Sbjct 360 T 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5