BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45320.1 Length=501 Score E Sequences producing significant alignments: (Bits) Value Ahg937202 jgi|Araly1|937202|scaffold_501393.1 765 0.0 Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1 75.0 5e-13 > Ahg937202 jgi|Araly1|937202|scaffold_501393.1 Length=544 Score = 765 bits (414), Expect = 0.0 Identities = 472/501 (94%), Gaps = 0/501 (0%) Strand=Plus/Plus Query 1 ATGGAGATGGAGAGTAGAACCTCTGGTTCTCGTGGCATCTCTTTCTGGTCAATCCTATTC 60 |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || Sbjct 24 ATGGAGATGGAGAGTAGAACCTCTGGTTCTGGAGGCATCTCTTTCTGGTCAATCCTACTC 83 Query 61 CACTCTCTTTGGACAACTATTATCGGAATCCTCTTCTTCCGTCTCGCAACCACCAATGGC 120 |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| Sbjct 84 CACTCTCTTTGGACAACTATTACCGGAATCCTCTTCTTCCGTCTCGCCACCACAAATGGC 143 Query 121 CACAAGTCCGGTTTCATCCACTTCTTTGCCATTTCCGGAACAGTACTCATTACCTTACCT 180 |||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct 144 CACAAGTCCGGTTTCATCCACTTCTTCGCCATATCCGGAACAATTCTCATTACCTTACCT 203 Query 181 TGGATCATCCAACTTCTCATCTCCACGACCGTAATACTTCTGCATAAGACCAAAGGTTAC 240 |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 204 TGGATCATCCAACTCCTCATCTCCACGACCGTAATACGTCTCCATAAGACCAAAGGTTAC 263 Query 241 AACCTCATGTGGATTGTTCAGTCACCAACAATAGCCAAAAAAGTTGTTGATCACACTAAA 300 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 264 AACCTCATGTGGATAGTTCAGTCACCAACAATATCCAAAAAAGTTGTTGATCACACAAAA 323 Query 301 GCTGGTACTTGTTCTGTTACATCTTCTCCTTCCTCAAATTGTCAAGTTTTGAAGGAAAGT 360 ||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||| Sbjct 324 TCTGGTACTTGTTCTGTTTCATCCTCTCCTTCCTCAAATCGCCAAGTTTTGAAGGAAAGT 383 Query 361 GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCGCTGCTGATGGTAAAAGAGAGGGT 420 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| Sbjct 384 GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCACTGCTGACGGTAAAAGAGATGGT 443 Query 421 TCCTCTCCAGGTTCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG 480 | |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 TGCTCTGCAGCTCCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG 503 Query 481 CTCACAAATGGATCCACTTGA 501 ||||||||||||||| ||||| Sbjct 504 CTCACAAATGGATCCGCTTGA 524 > Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1 Length=427 Score = 75.0 bits (40), Expect = 5e-13 Identities = 43/44 (98%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 229 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAACAAT 272 |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 115 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAA-AAT 157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18200215953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5