BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45320.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937202 jgi|Araly1|937202|scaffold_501393.1                        765    0.0  
  Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1        75.0    5e-13


> Ahg937202 jgi|Araly1|937202|scaffold_501393.1
Length=544

 Score =  765 bits (414),  Expect = 0.0
 Identities = 472/501 (94%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATGGAGAGTAGAACCTCTGGTTCTCGTGGCATCTCTTTCTGGTCAATCCTATTC  60
            |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct  24   ATGGAGATGGAGAGTAGAACCTCTGGTTCTGGAGGCATCTCTTTCTGGTCAATCCTACTC  83

Query  61   CACTCTCTTTGGACAACTATTATCGGAATCCTCTTCTTCCGTCTCGCAACCACCAATGGC  120
            |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct  84   CACTCTCTTTGGACAACTATTACCGGAATCCTCTTCTTCCGTCTCGCCACCACAAATGGC  143

Query  121  CACAAGTCCGGTTTCATCCACTTCTTTGCCATTTCCGGAACAGTACTCATTACCTTACCT  180
            |||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||
Sbjct  144  CACAAGTCCGGTTTCATCCACTTCTTCGCCATATCCGGAACAATTCTCATTACCTTACCT  203

Query  181  TGGATCATCCAACTTCTCATCTCCACGACCGTAATACTTCTGCATAAGACCAAAGGTTAC  240
            |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  204  TGGATCATCCAACTCCTCATCTCCACGACCGTAATACGTCTCCATAAGACCAAAGGTTAC  263

Query  241  AACCTCATGTGGATTGTTCAGTCACCAACAATAGCCAAAAAAGTTGTTGATCACACTAAA  300
            |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  264  AACCTCATGTGGATAGTTCAGTCACCAACAATATCCAAAAAAGTTGTTGATCACACAAAA  323

Query  301  GCTGGTACTTGTTCTGTTACATCTTCTCCTTCCTCAAATTGTCAAGTTTTGAAGGAAAGT  360
             ||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||
Sbjct  324  TCTGGTACTTGTTCTGTTTCATCCTCTCCTTCCTCAAATCGCCAAGTTTTGAAGGAAAGT  383

Query  361  GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCGCTGCTGATGGTAAAAGAGAGGGT  420
            |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct  384  GATGCAGAAGAGATTGCGATTAGGATCGTGATTGGCACTGCTGACGGTAAAAGAGATGGT  443

Query  421  TCCTCTCCAGGTTCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG  480
            | |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  TGCTCTGCAGCTCCTTTAGGCATGCTCATGGAAATTGAAGGAAGAAATAAGACTAAACTG  503

Query  481  CTCACAAATGGATCCACTTGA  501
            ||||||||||||||| |||||
Sbjct  504  CTCACAAATGGATCCGCTTGA  524


> Ahg496170 jgi|Araly1|496170|fgenesh2_kg.8__1986__AT5G60330.1
Length=427

 Score = 75.0 bits (40),  Expect = 5e-13
 Identities = 43/44 (98%), Gaps = 1/44 (2%)
 Strand=Plus/Plus

Query  229  ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAACAAT  272
            |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  115  ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAA-AAT  157



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5