BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45400.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484930 jgi|Araly1|484930|fgenesh2_kg.5__922__AT3G45400.1 2228 0.0
> Ahg484930 jgi|Araly1|484930|fgenesh2_kg.5__922__AT3G45400.1
Length=1629
Score = 2228 bits (1206), Expect = 0.0
Identities = 1508/1646 (92%), Gaps = 51/1646 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATGGTAGAGAAGAATAGTTCTGCGA-TTGGCTATGTAGCTAGAAATCTGTTACT 59
||||||||||| ||||||||| ||||||| | |||| |||||||||||||||||||||||
Sbjct 1 ATGGCAATGGTGGAGAAGAATGGTTCTGC-AGTTGGTTATGTAGCTAGAAATCTGTTACT 59
Query 60 GA-GCTTATTCGTCGTCACGACGATCCTCTTTGCTCTTTCCTGTTACTTTGTGTTACGTT 118
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 60 -ATGCTTATTCGTCGTCACGACGATACTCTTTGCTCTTTCGTGTTACTTTGTGTTACGAT 118
Query 119 CCACTGCTCATAATCGCTTCCTTAGCTCTACATTTCCATCTAAATCATTCGTCGATGT-- 176
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 119 CCACTGCTCATAATCGATTCCTTAGCTCTACATTTCCATCCAAATCATTCGTGGATGTGA 178
Query 177 AA---G----GCCGGAGAAAGCGAATTGTAGATGTGTTAAGGACGAGAAATCGTCGGTAA 229
|| | ||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 179 AAGGCGTAAAGCCGGAGAAAGAGAATTGTAGATGTGTTAAGGACGAGAAA---TCGGTAA 235
Query 230 TCGCGGGTCCTTTGAAGGTTTATATGTATAATATGGATCCAGAGTTTCATTTTGGATTGT 289
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 236 CCGCGGGTCCTCTGAAGGTTTATATGTATAATATGGATCCCGAGTTTCATTTTGGTTTGT 295
Query 290 TAGATTGG--A----A---GAAGAAGGAAGGTAGTGATAGTAGTGTATGGCCTGATATTC 340
|||||||| | | ||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 296 TAGATTGGAAACCTGATGGGAATAAGAAAGGTAGTG--A-TAGTGTATGGCCTGATATTC 352
Query 341 AGAAGTATATACCACCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGGC 400
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AGAAGTATATACCGCCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGG- 411
Query 401 TT-ACGTTGGATTTGCTTGCATCGGAGTATGAGAATGCACCGAGAAG-TGTTGCGGCGAA 458
|| ||||||||||| ||||| ||||||||||||||||| ||||| | | |||| |||||
Sbjct 412 TTGACGTTGGATTTACTTGCTTCGGAGTATGAGAATGCGCCGAG-GGCTATTGCTGCGAA 470
Query 459 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCGtttttttCTTCGTTGAG 518
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 471 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCCTTTTTTTCTTCGTTGAG 530
Query 519 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGGAATAAGGATTTGCA 578
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 531 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGAAATAAGGATTTGCA 590
Query 579 AGGGAAGTTGGTTACGTTTTTGACTGCTCAAGAGGAGTGGAAGAGGAGT--GGTGGTAGA 636
||||||| |||||||||||||||||| ||||||||||||||||| || | |||||||||
Sbjct 591 AGGGAAGCTGGTTACGTTTTTGACTGGTCAAGAGGAGTGGAAGA-GA-TCGGGTGGTAGA 648
Query 637 GATCATGTTGTTCTTGCTCATCATCCGAATAGTATGTTAGATGCTAGAAATAAGTTGTTT 696
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 649 GATCATGTTGTTCTTGCTCATCATCCCAATAGTATGTTGGATGCTAGAAATAAGCTGTTT 708
Query 697 CCTGCAATGTTTATACTTTCGGACTTTGGAAGGTATCCTCCTACTGTGGCTAATGTTGAG 756
|| |||||||||||||| || |||||||||||||| |||||||||||||| || ||||||
Sbjct 709 CCGGCAATGTTTATACTCTCAGACTTTGGAAGGTACCCTCCTACTGTGGCAAACGTTGAG 768
Query 757 AAAGATGTCATTGCGCCGTATAAGCATGTTATTAAAGCTTATGAAAACGATACATCGGGT 816
|||||| | || ||||| ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct 769 AAAGATATTATCGCGCCTTATAAGCATGTCATCAAAGCATATGAAAACGATACATCTGGT 828
Query 817 TTCGATAGTAGACCGATTCTGCTTTACTTTCAGGGTGCTATCTACAGGAAAGATGGCGGG 876
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 TTCGATAGTAGACCAATTCTGCTTTACTTTCAGGGTGCCATCTACAGGAAAGATGGCGGG 888
Query 877 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGATGTGCATTTCTCGTTT 936
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 889 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGACGTGCATTTCTCGTTT 948
Query 937 GGGAGTGTGAGAAACGGAGGTATAAACAAAGCAAGCCAAGGAATGCACAATTCCAAGTTC 996
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 949 GGGAGTGTGAGAAACGGAGGAATAAACAAAGCAAGCCAAGGAATGCACAACTCCAAGTTC 1008
Query 997 TGTCTCAATATTGCCGGAGACACTCCTTCGTCAAACCGTCTCTTTGACGCCATAGCCAGT 1056
|| ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1009 TGCCTCAACATTGCAGGAGACACTCCTTCATCAAACCGTCTCTTTGACGCCATTGCCAGT 1068
Query 1057 CACTGTGTTCCTGTCATTATCAGCGACGACATTGAGCTTCCTTTTGAGGATGTTATTGAT 1116
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1069 CACTGTGTTCCTGTCATTATCAGTGACGACATTGAGCTTCCTTTCGAGGACGTTATTGAT 1128
Query 1117 TACTCTGAGTTCTCGGTGTTTGTTCGCACCTCTGATGCATTGAAAGAGAACTTCTTGGTT 1176
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1129 TACTCTGAGTTCTCTGTGTTTGTTCGCACTTCTGATGCCTTGAAAGAGAACTTCTTGGTT 1188
Query 1177 AACTTAATACGAGGAATAACCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1236
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AACTTAATAAGAGGAATAAGCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1248
Query 1237 GTGGAGAAATATTATGAGTTCCATTTTCCATCAAAGGTAGATGATGCGGTGCAGATGATA 1296
||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 1249 GTGGAGAAATATTATGAGTTCCATTTTCCGTCAAAGGTAGATGATGCAGTCCAAATGATA 1308
Query 1297 TGGCAAGCGATTGCCCGTAAAGTTCCGGGTGTTAAAATGAGGATTCATAAGTCTAGAAGG 1356
||||||||||| || || ||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1309 TGGCAAGCGATCGCACGCAAAGTTCCGGGTGTTAAAATGAGAATTCACAAGTCTCGAAGG 1368
Query 1357 TATTCTGGATCTGTTTCTGAGACCGGGAAAGAATCAAGATGGTCTTCATTGATACCTCGG 1416
|||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 1369 TATTCTGGATCTGTTTCTGACACAGGGAAAGAATCAAGATGGTCGTCTTTGATACCTCGG 1428
Query 1417 AGTTTCTGGTGAATAAAGATGAGAtttttt-tGTCTTCATTTTCC-CAGAGGACATCAAA 1474
|||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||
Sbjct 1429 AGTTTCTGGTGAATAAAGATGAGATTTTTTCTGTCTTCTTTTTTCTCAGAGGACATCAAA 1488
Query 1475 TTGtttttttgtttttg------tttttGT-GTAGAGATAAGTTTATGTT-GGATCAAGA 1526
||||| |||| ||||| ||||| | ||||||| ||||||||||| |||||| ||
Sbjct 1489 TTGTTCTTTT-TTTTTAAAAAAATTTTTTTTGTAGAGAGAAGTTTATGTTTGGATCA-GA 1546
Query 1527 TGATTTGTCAACTTTTTCCCCTAATCATAGGTTATAGATAGAGAGACAAGTCTTCACTCT 1586
||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1547 TGATTTGTCAA-TCA--CCCCAAATCATAGGTTATAGACAGAGAGACAAGTCTTCACTCT 1603
Query 1587 AATTTGATTTCTTCTTTTCACCATAG 1612
|||||||||||| |||||||||||||
Sbjct 1604 AATTTGATTTCTGCTTTTCACCATAG 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5