BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45400.1 Length=1627 Score E Sequences producing significant alignments: (Bits) Value Ahg484930 jgi|Araly1|484930|fgenesh2_kg.5__922__AT3G45400.1 2228 0.0 > Ahg484930 jgi|Araly1|484930|fgenesh2_kg.5__922__AT3G45400.1 Length=1629 Score = 2228 bits (1206), Expect = 0.0 Identities = 1508/1646 (92%), Gaps = 51/1646 (3%) Strand=Plus/Plus Query 1 ATGGCAATGGTAGAGAAGAATAGTTCTGCGA-TTGGCTATGTAGCTAGAAATCTGTTACT 59 ||||||||||| ||||||||| ||||||| | |||| ||||||||||||||||||||||| Sbjct 1 ATGGCAATGGTGGAGAAGAATGGTTCTGC-AGTTGGTTATGTAGCTAGAAATCTGTTACT 59 Query 60 GA-GCTTATTCGTCGTCACGACGATCCTCTTTGCTCTTTCCTGTTACTTTGTGTTACGTT 118 | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 60 -ATGCTTATTCGTCGTCACGACGATACTCTTTGCTCTTTCGTGTTACTTTGTGTTACGAT 118 Query 119 CCACTGCTCATAATCGCTTCCTTAGCTCTACATTTCCATCTAAATCATTCGTCGATGT-- 176 |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 119 CCACTGCTCATAATCGATTCCTTAGCTCTACATTTCCATCCAAATCATTCGTGGATGTGA 178 Query 177 AA---G----GCCGGAGAAAGCGAATTGTAGATGTGTTAAGGACGAGAAATCGTCGGTAA 229 || | ||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 179 AAGGCGTAAAGCCGGAGAAAGAGAATTGTAGATGTGTTAAGGACGAGAAA---TCGGTAA 235 Query 230 TCGCGGGTCCTTTGAAGGTTTATATGTATAATATGGATCCAGAGTTTCATTTTGGATTGT 289 |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 236 CCGCGGGTCCTCTGAAGGTTTATATGTATAATATGGATCCCGAGTTTCATTTTGGTTTGT 295 Query 290 TAGATTGG--A----A---GAAGAAGGAAGGTAGTGATAGTAGTGTATGGCCTGATATTC 340 |||||||| | | ||| ||| ||||||||| | |||||||||||||||||||| Sbjct 296 TAGATTGGAAACCTGATGGGAATAAGAAAGGTAGTG--A-TAGTGTATGGCCTGATATTC 352 Query 341 AGAAGTATATACCACCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGGC 400 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 AGAAGTATATACCGCCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGG- 411 Query 401 TT-ACGTTGGATTTGCTTGCATCGGAGTATGAGAATGCACCGAGAAG-TGTTGCGGCGAA 458 || ||||||||||| ||||| ||||||||||||||||| ||||| | | |||| ||||| Sbjct 412 TTGACGTTGGATTTACTTGCTTCGGAGTATGAGAATGCGCCGAG-GGCTATTGCTGCGAA 470 Query 459 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCGtttttttCTTCGTTGAG 518 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 471 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCCTTTTTTTCTTCGTTGAG 530 Query 519 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGGAATAAGGATTTGCA 578 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 531 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGAAATAAGGATTTGCA 590 Query 579 AGGGAAGTTGGTTACGTTTTTGACTGCTCAAGAGGAGTGGAAGAGGAGT--GGTGGTAGA 636 ||||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||| Sbjct 591 AGGGAAGCTGGTTACGTTTTTGACTGGTCAAGAGGAGTGGAAGA-GA-TCGGGTGGTAGA 648 Query 637 GATCATGTTGTTCTTGCTCATCATCCGAATAGTATGTTAGATGCTAGAAATAAGTTGTTT 696 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 649 GATCATGTTGTTCTTGCTCATCATCCCAATAGTATGTTGGATGCTAGAAATAAGCTGTTT 708 Query 697 CCTGCAATGTTTATACTTTCGGACTTTGGAAGGTATCCTCCTACTGTGGCTAATGTTGAG 756 || |||||||||||||| || |||||||||||||| |||||||||||||| || |||||| Sbjct 709 CCGGCAATGTTTATACTCTCAGACTTTGGAAGGTACCCTCCTACTGTGGCAAACGTTGAG 768 Query 757 AAAGATGTCATTGCGCCGTATAAGCATGTTATTAAAGCTTATGAAAACGATACATCGGGT 816 |||||| | || ||||| ||||||||||| || ||||| ||||||||||||||||| ||| Sbjct 769 AAAGATATTATCGCGCCTTATAAGCATGTCATCAAAGCATATGAAAACGATACATCTGGT 828 Query 817 TTCGATAGTAGACCGATTCTGCTTTACTTTCAGGGTGCTATCTACAGGAAAGATGGCGGG 876 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 829 TTCGATAGTAGACCAATTCTGCTTTACTTTCAGGGTGCCATCTACAGGAAAGATGGCGGG 888 Query 877 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGATGTGCATTTCTCGTTT 936 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 889 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGACGTGCATTTCTCGTTT 948 Query 937 GGGAGTGTGAGAAACGGAGGTATAAACAAAGCAAGCCAAGGAATGCACAATTCCAAGTTC 996 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 949 GGGAGTGTGAGAAACGGAGGAATAAACAAAGCAAGCCAAGGAATGCACAACTCCAAGTTC 1008 Query 997 TGTCTCAATATTGCCGGAGACACTCCTTCGTCAAACCGTCTCTTTGACGCCATAGCCAGT 1056 || ||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1009 TGCCTCAACATTGCAGGAGACACTCCTTCATCAAACCGTCTCTTTGACGCCATTGCCAGT 1068 Query 1057 CACTGTGTTCCTGTCATTATCAGCGACGACATTGAGCTTCCTTTTGAGGATGTTATTGAT 1116 ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 1069 CACTGTGTTCCTGTCATTATCAGTGACGACATTGAGCTTCCTTTCGAGGACGTTATTGAT 1128 Query 1117 TACTCTGAGTTCTCGGTGTTTGTTCGCACCTCTGATGCATTGAAAGAGAACTTCTTGGTT 1176 |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1129 TACTCTGAGTTCTCTGTGTTTGTTCGCACTTCTGATGCCTTGAAAGAGAACTTCTTGGTT 1188 Query 1177 AACTTAATACGAGGAATAACCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1236 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1189 AACTTAATAAGAGGAATAAGCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1248 Query 1237 GTGGAGAAATATTATGAGTTCCATTTTCCATCAAAGGTAGATGATGCGGTGCAGATGATA 1296 ||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||| Sbjct 1249 GTGGAGAAATATTATGAGTTCCATTTTCCGTCAAAGGTAGATGATGCAGTCCAAATGATA 1308 Query 1297 TGGCAAGCGATTGCCCGTAAAGTTCCGGGTGTTAAAATGAGGATTCATAAGTCTAGAAGG 1356 ||||||||||| || || ||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 1309 TGGCAAGCGATCGCACGCAAAGTTCCGGGTGTTAAAATGAGAATTCACAAGTCTCGAAGG 1368 Query 1357 TATTCTGGATCTGTTTCTGAGACCGGGAAAGAATCAAGATGGTCTTCATTGATACCTCGG 1416 |||||||||||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 1369 TATTCTGGATCTGTTTCTGACACAGGGAAAGAATCAAGATGGTCGTCTTTGATACCTCGG 1428 Query 1417 AGTTTCTGGTGAATAAAGATGAGAtttttt-tGTCTTCATTTTCC-CAGAGGACATCAAA 1474 |||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||| Sbjct 1429 AGTTTCTGGTGAATAAAGATGAGATTTTTTCTGTCTTCTTTTTTCTCAGAGGACATCAAA 1488 Query 1475 TTGtttttttgtttttg------tttttGT-GTAGAGATAAGTTTATGTT-GGATCAAGA 1526 ||||| |||| ||||| ||||| | ||||||| ||||||||||| |||||| || Sbjct 1489 TTGTTCTTTT-TTTTTAAAAAAATTTTTTTTGTAGAGAGAAGTTTATGTTTGGATCA-GA 1546 Query 1527 TGATTTGTCAACTTTTTCCCCTAATCATAGGTTATAGATAGAGAGACAAGTCTTCACTCT 1586 ||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1547 TGATTTGTCAA-TCA--CCCCAAATCATAGGTTATAGACAGAGAGACAAGTCTTCACTCT 1603 Query 1587 AATTTGATTTCTTCTTTTCACCATAG 1612 |||||||||||| ||||||||||||| Sbjct 1604 AATTTGATTTCTGCTTTTCACCATAG 1629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60982482245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5