BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45410.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937205 jgi|Araly1|937205|scaffold_501396.1 3121 0.0
Ahg937206 jgi|Araly1|937206|scaffold_501397.1 1949 0.0
Ahg937203 jgi|Araly1|937203|scaffold_501394.1 612 4e-174
> Ahg937205 jgi|Araly1|937205|scaffold_501396.1
Length=2037
Score = 3121 bits (1690), Expect = 0.0
Identities = 1909/2018 (95%), Gaps = 2/2018 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTGTAGACTATATTTGGCTTTGATCTTCTCTTGCGTTTATCTGATTTGCCTGTCA 60
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGCTTGCAGACTATATCTGGCTTTGATCTTCTCTTGCGTTTATCTGATTTTCCTGTCA 80
Query 61 AGTCAACAAGAAACCGGGTTTGTCTACAATGGCTTCGAGCAAGCAGATCTTTTTATTGAT 120
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 81 AGTCAACAAGAAACCGGGTTTGTCTACAATGGCTTTGATCAGGCAGATCTTTTTATCGAT 140
Query 121 GGGATCGCCAAAATACTACCTGATGGGCTTTTGCAGTTGACAAATACTACAGAGTTGCAA 180
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 GGGATCGCCAAGATCCTACCTGATGGACTTTTGCAGTTGACAAATACTACAGAGTTGCAA 200
Query 181 ATGGGTCATGCTTTCTTCAAGAAGCCGTTTGATTTTGATCCATCTTCATCACTATCGTTC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 201 ATGGGTCATGCTTTCTTCAAGAAGCCATTTGATTTTGATCCATCTTCATCATTTTCGTTC 260
Query 241 TATACACATTTTGTGTGTGCGCTTGTGCCTCCTAAGTTGGGAGCTGATGGTGGCCATGGG 300
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 261 TATACACATTTTGTGTGCGCGCTGGTGCCTCCTAAGTTGGGAGCTGATGGTGGCCATGGT 320
Query 301 ATTGTCTTTGTTGTATCTCCTTCCATTGATCTCTCTCATGCATACGCAACTCAGTACTTG 360
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 321 ATCGTTTTTGTTGTATCTCCTTCCATGGATCTCTCTCATGCATACGCAACTCAGTACTTG 380
Query 361 GGGGTCTTCAGCAACTTAACAAATGGGACTTCCTCTTCACATCTGCTAGCTATTGAGCTC 420
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 381 GGGGTCTTCAGCAACCTAACAAATGGGACTTCCTCTTCACATCTACTAGCTATTGAGCTC 440
Query 421 GATACCGTTAAGACAGTAGAGTTTAATGAGCTGGAGAAGCCTCATGTTGGTATTGATTTG 480
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 441 GATACCGTTAAGACAGTAGAGTTTAATGAGTTGGAAAAGCCTCATGTTGGTATTGATTTG 500
Query 481 AACAGCCCAATATCTGTTGAATCTGCTCTGCCATCTTACTTTTCCAACGCTTTGGGGAAG 540
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 501 AACAGCCCAATATCTGTTGAATCTGCTCTGCCATCTTACTTTTCTGGCGCCTCAGGGAAG 560
Query 541 AATATAAGCATAAATCTTCTTAGTGGGGAGCCTATACAGGTCTGGGTAGATTACGATGGC 600
|||||||||||| ||||||| ||||||||| |||| ||||| ||||| ||||||||||||
Sbjct 561 AATATAAGCATAGATCTTCTGAGTGGGGAGGCTATCCAGGTTTGGGTGGATTACGATGGC 620
Query 601 TCGTTTCTAAATGTTACACTGGCCCCTATAGAAATCAAGAAGCCAAATCAGCCTCTTATA 660
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 621 TCGTTGCTAAATGTTACACTGGCCCCTATAGAAATCCAGAAGCCAAATCAGCCTCTTATA 680
Query 661 TCAAGAGCCATCAATCTTTCAGAAATCTTTCAAGAGAAGATGTATGTTGGGTTCTCTTCA 720
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 681 TCAAGAGCCATCAATCTTTCAGAGATTTTTCAAGAGAAGATATATGTTGGGTTCTCTTCA 740
Query 721 TCAACAGGGAATCTTCTCAGTAACCATTATATACTTGGATGGAGTTTTAGTAGAAGAAAA 780
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 741 TCAACAGGGAATCTTCTTAGTAACCATTATATACTTGGGTGGAGTTTTAGTAGAAGCAAA 800
Query 781 GAACAATTACAGAGCCTGAACCTCTCTACACTTCCTCGGGTTCCTCTTCCTAAAGAGGaa 840
||||||||||||| |||| ||||||||| ||| |||| | |||||||||||| |||||||
Sbjct 801 GAACAATTACAGAACCTGGACCTCTCTAAACTCCCTCAGATTCCTCTTCCTAGAGAGGAA 860
Query 841 aaaaaGAAATTATCTCCATTACTTATTGGTTTGGTCATCTTATTAGTGATTCCTGTGGTG 900
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 861 AAAAAGAAATTATCTCCACTACTTATTGGTTTGGTCATCTTATTAGTGATTCCTGTGCTG 920
Query 901 ATGGTTCTTGGAGGAGTTTATTGGTACAGGAGAAAGAAATATGCAGAAGTAAAAGAATGG 960
||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 921 ATGGTTCTTGGAGGAATGTATTGGTTCAGAAGAAAGAAATATGCAGAAGTAAAAGAATGG 980
Query 961 TGGGAAAAGGAATACGGCCCACACCGATTCTCCTATAAGTCTCTGTACAAAGCAACAAAT 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGGGAGAAGGAATACGGCCCACACCGATTCTCCTATAAGTCTCTGTACAAAGCAACAAAT 1040
Query 1021 GGGTTTCGTAAAGATTGTCGTGTTGGGAAAGGTGGGTTTGGAGAAGTCTACAAAGGAACT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GGGTTTCGTAAAGATTGTCGTGTTGGGAAAGGTGGGTTTGGAGAAGTCTACAAAGGAACT 1100
Query 1081 TTGCCCGGAGGCAGGCATATAGCTGTGAAAAGACTATCCCACGATGCAGAGCAAGGGATG 1140
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1101 CTGCCCGGAGGCAGGCATATAGCTGTGAAAAGACTATCCCATGATGCAGAGCAAGGGATG 1160
Query 1141 AAACAGTTTGTGGCAGAAGTTGTAACCATGGGAAATTTACAACATCGGAACTTGGTTCCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAACAGTTTGTGGCAGAAGTTGTAACCATGGGAAATTTACAACATCGGAACTTGGTTCCT 1220
Query 1201 CTTCTCGGGTATTGCAGGAGAAAATGTGAGTTACTTTTGGTGTCTGAGTACATGCCCAAC 1260
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1221 CTTCTCGGGTATTGCAGGAGAAAATGTGAGTTGCTTCTGGTCTCTGAGTACATGCCCAAC 1280
Query 1261 GGTAGCCTTGACCAGTACTTGTTTCATGAGGGAAACCCATCTCCTTCATGGTATCAAAGA 1320
||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1281 GGTAGTCTTGACCAGTACTTGTTTCATGACGAAAACCCATCTCCTTCATGGTTTCAAAGG 1340
Query 1321 ATTTCTATTCTTAAGGACATTGCCTCAGCTCTCAGTTACTTGCATACAGGAACCAAGCAA 1380
||||||||||||||||||||||| || ||||| |||||| ||||||||||||||||||||
Sbjct 1341 ATTTCTATTCTTAAGGACATTGCATCGGCTCTTAGTTACCTGCATACAGGAACCAAGCAA 1400
Query 1381 GTTGTTTTGCACCGGGATATAAAAGCTTCTAACGTCATGTTGGATTCCGAGTTCAACGGG 1440
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1401 GTTGTTTTGCATCGGGATATAAAAGCTTCGAACGTCATGTTAGATTCCGAGTTCAACGGG 1460
Query 1441 AGGTTAGGTGATTTTGGAATGGCCAAGTTTCACGACCGTGGAACCAACTTATCTGCAACA 1500
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1461 AGGTTAGGTGATTTTGGCATGGCCAAGTTTCACGACCGTGGAGCCAACTTATCTGCAACT 1520
Query 1501 GCCGCTGTGGGAACCATAGGTTACATGGCACCTGAACTAATAACAATGGGCACGTCTATG 1560
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1521 GCCGCTGTGGGAACCATAGGTTACATGGCACCTGAGCTAATAACAATGGGAACATCTATG 1580
Query 1561 AAAACCGATGTGTATGCTTTTGGTGCTTTTCTTCTTGAAGTAATTTGTGGCAGGCGACCA 1620
||||||||||||||||| ||||||||||| ||||||||||||| |||||| || |||||
Sbjct 1581 AAAACCGATGTGTATGCCTTTGGTGCTTTCCTTCTTGAAGTAACTTGTGGAAGACGACCT 1640
Query 1621 GTGGAACCTGAGCTACCAGTCGGAAAGCAATATTTGGTCAAGTGGGTCTATGAATGCTGG 1680
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1641 GTGGAACCTGAGCTACCAGTTGGAAAGCAATATTTGGTCAAGTGGGTCTACGAATGCTGG 1700
Query 1681 AAAGAGGCTTGCTTATTCAAGACCAGAGATCCAAGATTGGGAGTAGAATTCTTACCCGAG 1740
||| ||||||| ||| || |||||||||||||||||||||||| |||| ||||||||| |
Sbjct 1701 AAACAGGCTTGTTTACTCGAGACCAGAGATCCAAGATTGGGAGGAGAACTCTTACCCGTG 1760
Query 1741 GAAGTCGAGATGGTTCTGAAACTTGGGTTACTCTGCACAAATGCTATGCCAGAATCAAGG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GAAGTCGAGATGGTTCTGAAACTTGGGTTACTCTGCACAAATGCTATGCCAGAATCAAGG 1820
Query 1801 CCTGCGATGGAACAAGTGGTGCAATACCTTAACCAAGACTTACCCTTACC-GATTTTCTC 1859
||||| |||||||||||||||||||||||||||| |||||| ||||||| ||||| |||
Sbjct 1821 CCTGCAATGGAACAAGTGGTGCAATACCTTAACCGGGACTTAGCCTTACCAGATTT-CTC 1879
Query 1860 GCCGTCTACTCCAGGTATCGGGGCTTTTATGCCAGTTTCTATGGAAGCATTATCTGCCAT 1919
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1880 GCCGTCTACTCCAGGTATCGGGGCTTTTATGCCAGTTTCAATGGATGCATTATCTGCCAT 1939
Query 1920 TGGGGTCTCCAGTGTAAGGAACTCATCAGTTTCTATGTTTGTTACTCACACAATCTTGGA 1979
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1940 TGGGGTCTCCAGTGTAAGGAATTCATCAGTCTCTATGTTTGTTACTCACACGATCTTGGA 1999
Query 1980 CGGGCATGGAAGATAAGATCTAAGAAATTCTATACTCT 2017
||||||||||||||||||||||||||| | | ||||||
Sbjct 2000 CGGGCATGGAAGATAAGATCTAAGAAACTGTGTACTCT 2037
> Ahg937206 jgi|Araly1|937206|scaffold_501397.1
Length=2046
Score = 1949 bits (1055), Expect = 0.0
Identities = 1686/1979 (85%), Gaps = 90/1979 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTGTAGACTATATTTGGCTTTGATCTTCTCTTGCGTTTATCTGATTTGCCTGTCA 60
|||| ||||||||| || ||| |||||||||||| || ||||||||||||||| |||||
Sbjct 21 ATGGATTGTAGACTGCATCTGGTTTTGATCTTCTCCTGTGTTTATCTGATTTGCTTGTCA 80
Query 61 AGTCAACAAGAAACCGGGTTTGTCTACAATGGCTTCGAGCAAGCAGATCTTTTTATTGAT 120
|||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 81 GGTCAACAAGAAAACGGGTTTGTATACAATGGCTTCGATCAAGCTGATCTTTTTATTGAT 140
Query 121 GGGATCGCCAAAATACTACCTGATGGGCTTTTGCAGTTGACAAATACTACAGAGTTGCAA 180
||| ||||||| || || |||| ||| |||||||||||||||||| |||| |||||| ||
Sbjct 141 GGGCTCGCCAAGATCCTTCCTGGTGGACTTTTGCAGTTGACAAATGCTACGGAGTTGAAA 200
Query 181 ATGGGTCATGCTTTCTTCAAGAAGCCGTTTGATTTTGATCCATCTTCATCACTATCGTTC 240
|||||||||||||| |||||| |||| |||| |||||||||||||||||| || || |||
Sbjct 201 ATGGGTCATGCTTTTTTCAAGCAGCCATTTGGTTTTGATCCATCTTCATCCCTCTCATTC 260
Query 241 TATACACATTTTGTGTGTGCGCTTGTGCCTCCTAAGTTGGGAGCTGATGGT-GGCCATGG 299
||||||||||||||||| ||||| |||||||||||||| ||||||| || | || || ||
Sbjct 261 TATACACATTTTGTGTGCGCGCTGGTGCCTCCTAAGTTCGGAGCTG-TGTTAGGGCACGG 319
Query 300 GATTGTCTTTGTTGTATCTCCTTCCATTG-ATCTCTCTCATGC-ATACGCAACTCAGTAC 357
|| | |||||||||||||||||| | || || |||||||||| | | |||||||||||
Sbjct 320 TATGGCCTTTGTTGTATCTCCTTCTA-TGAATTTCTCTCATGCGTTTC-CAACTCAGTAC 377
Query 358 TTGGGGGTCTTCAGCAACTTAACAAATGGGACTTCCTCTTCACATCTGCTAGCTATTGAG 417
||||| ||||||| || || |||||||| ||||||| |||| ||||||||||||||||||
Sbjct 378 TTGGGCGTCTTCAACAGCTCAACAAATGTGACTTCCCCTTCTCATCTGCTAGCTATTGAG 437
Query 418 CTCGATACCGTTAAGACAGTAGAGTTTAATGAGCTGGAGAAGCCTCATGTTGGTATTGAT 477
|| ||||| ||| |||||||||||||| |||| || || ||| |||||||||| ||||||
Sbjct 438 CTTGATACTGTTCAGACAGTAGAGTTTCATGATCTAGAAAAGGCTCATGTTGGGATTGAT 497
Query 478 TTGAACAGCCCAATATCTGTTGAATCTGCTCTGCCATCTTACTTTTCCAACGCTTTGGGG 537
|||||| ||| ||||||||||| |||||||| || ||||||||||| |||| ||||||
Sbjct 498 GTGAACAACCCGATATCTGTTGAGTCTGCTCTCCCGTCTTACTTTTCTGACGCCTTGGGG 557
Query 538 AAGAATATAAGCATAAATCTTCTTAGTGGGGAGCCTATACAGGTCTGGGTAGATTACGAT 597
||||||||||||||| ||||||| |||||||||||| | ||||| ||||| ||||| |||
Sbjct 558 AAGAATATAAGCATAGATCTTCTGAGTGGGGAGCCTGTTCAGGTGTGGGTGGATTATGAT 617
Query 598 GGCTCGTTTCTAAATGTTACACTGGCCCCTATAGAAATCAAGAAGCCAAATCAGCCTCTT 657
|| |||||||||||||||||||| ||||||||||||||| |||| ||||| | |||||||
Sbjct 618 GGATCGTTTCTAAATGTTACACTAGCCCCTATAGAAATCCAGAAACCAAACCGGCCTCTT 677
Query 658 ATATCAAGAGCCATCAATCTTTCAGAAATCTTTCAAGAGAAGATGTATGTTGGGTTCTCT 717
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 678 ATATCAAGAGCCATCAATCTGTCAGAAATTTTTCAAGATAAGATGTATGTTGGGTTCTCT 737
Query 718 TCATC-AACAGGGA-ATCT-TCTCAGTAACCATTATATACTTGGATGGAGTTTTAGTAGA 774
||| || |||| || | | ||||||||| ||||||||||| ||||||||||||| |
Sbjct 738 GGATCGAA-TGGGAGAT-TGAC-CAGTAACCAGTATATACTTGGGTGGAGTTTTAGTAAA 794
Query 775 AGAAAAGAACAATTACAG-AG-C-CTGAACCTCTCT--A-----C-A-----C--TTCCT 816
|| ||||||| ||| | || | ||| |||||||| | | | | |||||
Sbjct 795 AGCAAAGAAC--TTA-TGCAGTCTCTGGACCTCTCTAAACTCCCCAAGGCTCCTATTCCT 851
Query 817 CG----G----GTTCCTC-TTCCTAAAGAGGaaaaaaaGAAATTATC-TCCA-TTACTTA 865
| | | || | |||||| |||||||||||| |||||| | |||| || ||||
Sbjct 852 AGAAATGAACAGGCCCCCGTTCCTAGAGAGGAAAAAAATAAATTA-CTTCCACTT-CTTA 909
Query 866 TTGGTTTGGTCATCTTATTAG-TGATTCC-TGTGGTGATGGTTCTTGGAGGAGTTTATTG 923
||||||||||||||||||| | ||| ||| |||| |||||||||| ||||||||||| ||
Sbjct 910 TTGGTTTGGTCATCTTATT-GCTGA-TCCTTGTGCTGATGGTTCTCGGAGGAGTTTACTG 967
Query 924 GTACAGGAGAAAGAAATATGCAGAAGTAAAAGAATGGTGGGAAAAGGAATACGGCCCACA 983
|||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 968 GTACAGAAGAAAGAAGTATGCAGAAGTAAGAGAATCGTGGGAAAAGGAATACGGCCCACA 1027
Query 984 CCGAT-TCTCCTATAAGTCTCTGTACAAAGCAACAAATGGGTTTCGT-AAAGATTG-TCG 1040
||||| | ||||| |||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 1028 CCGATAT-TCCTACAAGTCTCTGTACAAAGCAACAAATGGGTTT-GTCAAAGA-TGCTCT 1084
Query 1041 TGTTGGGAAAGGTGGGTTTGGAGAAGTCTACAAAGGAACTTTGCCCGGAGGCAGGCATAT 1100
|||||||||||||||||||||| |||| |||||||||||| |||| ||||| ||||||
Sbjct 1085 TGTTGGGAAAGGTGGGTTTGGAAAAGTTTACAAAGGAACTCTGCCTTCAGGCAAGCATAT 1144
Query 1101 AGCTGTGAAAAGACTATCCCACGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGT 1160
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGCTGTGAAAAGACTATCCCATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGT 1204
Query 1161 TGTAACCATGGGAAATTTACAACATCGGAACTTGGTTCCTCTTCTCGGGTATTGCAGGAG 1220
||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 1205 CGTAACGATGGGAAATTTACAACATCGCAACTTGGTTCCTCTTCTTGGGTATTGTAGAAG 1264
Query 1221 AAAATGTGAGTTACTTTTGGTGTCTGAGTACATGCCCAACGGTAGCCTTGACCAGTACTT 1280
|||| ||||||| || |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1265 AAAAGGTGAGTTGCTACTGGTCTCTGAGTACATGCCCAACGGTAGTCTTGACCAGTACTT 1324
Query 1281 GTTTCATGAGGGAAACCCATCTCCTTCATGGTAT-CAAAGAATTTCTATTCTTAAGGACA 1339
|||| | | ||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1325 GTTTTGTAACCAAAACCCATCTCTTTCATGGT-TGCAAAGAATTTCTATTCTTAAGGACA 1383
Query 1340 TTGCCTCAGCTCTCAGTTACTTGCATACAGGAACCAAGCAAGTTGTTTTGCACCGGGATA 1399
| ||||| ||||||| |||| ||||||||||| |||| | || |||||||||||||||||
Sbjct 1384 TCGCCTCGGCTCTCAATTACCTGCATACAGGAGCCAATCCAGCTGTTTTGCACCGGGATA 1443
Query 1400 TAAAAGCTTCTAACGTCATGTTGGATTCCGAGT-TCAACGGGAGGTTAGGTGATTTTGGA 1458
||||||||||||| |||||||| ||||| |||| | || || || ||||| ||||||||
Sbjct 1444 TAAAAGCTTCTAATGTCATGTTAGATTCTGAGTAT-AATGGAAGATTAGGAGATTTTGGT 1502
Query 1459 ATGGCCAAGTTTCACGACCGTGGAACC-AACTTATCTGCAACAGCCGCTGTGGGAACCAT 1517
|||||||||||||| |||| || | ||| ||||||||||||| ||||||||||||||
Sbjct 1503 ATGGCCAAGTTTCAGGACCCCC-AAGCGAACCTATCTGCAACAGCTGCTGTGGGAACCAT 1561
Query 1518 AGGTTACATGGCACCTGAACTAATAACAA-TGGGCACGTCTAT-GAAAACCGATGTGTAT 1575
|||||||||||||||||| ||||||| || ||| || |||| |||| | |||||||||
Sbjct 1562 AGGTTACATGGCACCTGAGCTAATAAGAACTGGA-ACTTCTAAAGAAA-CTGATGTGTAT 1619
Query 1576 GCTTTTGGTGCTTTTC-TTCTTGAAGTAATTTGTGGCAGGCGACCAGTGGAACCTGAGCT 1634
|| ||||||| ||||| ||| |||||||| |||||| |||||||| | ||||| ||| |
Sbjct 1620 GCCTTTGGTG-TTTTCCTTCATGAAGTAACTTGTGGAAGGCGACCTTTTGAACCAGAGTT 1678
Query 1635 ACCAGTCGGAAA-GCAATATTTGGTCAAGTGGGTCTATGAATGCTGGAAAGAGGCTTGCT 1693
|||| || ||| | ||||| ||||||||||||| | |||||||||||| | |||| ||
Sbjct 1679 GCCAG-CGCAAAAGAAATATCTGGTCAAGTGGGTTTGCGAATGCTGGAAACATGCTT-CT 1736
Query 1694 T-ATTCAAGACCAGAGATCCAAGATTGGGA-GTAGAATTCTTACCCGAGGAAGTCGAGAT 1751
| | |||||||||||||||||| ||||||| | ||||||| || |||| |||||||| ||
Sbjct 1737 TTACTCAAGACCAGAGATCCAAAATTGGGAAG-AGAATTCGTATCCGAAGAAGTCGAAAT 1795
Query 1752 GGTTCTGAAACTTGGGTTACTCTGCACAAATGCTATGCCAGAATCAAGGCCTG-CGATGG 1810
|||| ||||||||||||| ||||||||||||| | | |||||||||||||||| | ||||
Sbjct 1796 GGTTTTGAAACTTGGGTTGCTCTGCACAAATGATGTTCCAGAATCAAGGCCTGAC-ATGG 1854
Query 1811 AACAAGTGGTGCAATACCTTAA-CC--AAGACTTACCCTTACCG-ATTTTCTCGCC-G-T 1864
||||||| |||||||||| || || || || |||||||||| |||| ||| || | |
Sbjct 1855 GACAAGTGATGCAATACCT-AAGCCGGAA-ACA-ACCCTTACCGGATTT-CTCACCAGAT 1910
Query 1865 CTACTCCAGGTATCGGGGCTTTTATGCCAGTTTCTA-TGGAAGCATTATCTGCCATTGG 1922
| |||||||||| |||| ||||||||| ||||| | |||||||| |||| |||||||
Sbjct 1911 -T-CTCCAGGTATTGGGGGTTTTATGCCGGTTTC-AGTGGAAGCAGCATCTACCATTGG 1966
> Ahg937203 jgi|Araly1|937203|scaffold_501394.1
Length=2083
Score = 612 bits (331), Expect = 4e-174
Identities = 1315/1767 (74%), Gaps = 159/1767 (9%)
Strand=Plus/Plus
Query 142 GATGGGCTTTTGCAGTTGACAAATACTACAGAGT-TGCAA-ATGGGTCATGCTTTCTTCA 199
||||| ||||||||| | || || | ||| | | |||| | |||||||||||||||||
Sbjct 171 GATGGACTTTTGCAGCTAACCAACGCCACA-ACTCAGCAACA-GGGTCATGCTTTCTTCA 228
Query 200 AGAAG-CCGTTTG-ATT---TTGATC--CATCTTC-ATCACTATCGTTCT-ATACACATT 250
| || || || | ||| || | | |||| || ||| || || |||| | || ||||
Sbjct 229 A-CAGACCATTCGAATTCGGTTCAGCGTCATC-TCAATCTCTTTCTTTCTCA-ACTCATT 285
Query 251 TTGTGTGTGCGCT-TGTGCCTCCTAAGTTGGGAGCTGATGGTGGCCATGGGATTGTC-TT 308
| || | |||||| | || | |||||| ||||| || |||||| |||||||||| | ||
Sbjct 286 TCGT-T-TGCGCTCT-TGTC-CCTAAGCCGGGAGTTGTTGGTGGTCATGGGATTG-CTTT 340
Query 309 TGTTGTATC-TCCTTCCATTGATCTCT-CTCATGCATA-CGCAACTCAGTACTTGGGGGT 365
|||| |||| | |||| || ||| | | | || ||| | | ||||||| || || || |
Sbjct 341 TGTTCTATCAT-CTTCAATGGAT-TTTACACAAGCAGATC-CAACTCAATATTTAGGACT 397
Query 366 CTTCAGCAACTTAACAAATGGGACT-TCC-TCTTCACATCTGCTAGCTATTGAGCTCGAT 423
||||| || || ||| ||| ||| | ||| ||||| ||| | ||||||||||||| |||
Sbjct 398 CTTCAACATCTCAACTAAT-GGA-TCTCCTTCTTCTCATGTTTTAGCTATTGAGCTTGAT 455
Query 424 ACCGT--TAAGACAGTAGAGTTTAATGAGCTGGA-GAAGCCTCATGTTGGTATTGATTTG 480
|| || ||| | | ||||||| |||| | || || | ||||| || || || |
Sbjct 456 ACGGTCCAAAG-C-GCAGAGTTTGATGATATCGACAAAAAC-CATGTCGGGATAGACATA 512
Query 481 AACAGCC-CAATATCTGTTGAATCTGCT-CTGCCATCTTACTT-TTCCA-AC-GCTTTGG 535
||||||| | | || |||||||||||| | | | ||||| || || || || | |
Sbjct 513 AACAGCCTCCA-GTCCGTTGAATCTGCTCCAG-CTTCTTA-TTATT-CAGACAG-AGAAG 567
Query 536 GGAAGA-ATATAAGCAT-AAATCTTCTT-AGTGGGGAGCCTATACAGGTCTGGGTAGATT 592
|||||| | | |||| | ||| | |||| ||||| | ||||| ||||| ||| | ||||
Sbjct 568 GGAAGAGA-AAAAGCTTGAAA-C-TCTTGAGTGGAAATCCTATTCAGGTATGGATTGATT 624
Query 593 ACG---ATGGCTCGTTTCTAAATGTTACACTGGC-CC-CTATAGAAATCAAGAAGCCAAA 647
| | || ||| | || |||||||| | || || ||| | ||||| |||||||||
Sbjct 625 ATGAAAAT-ACTC--TACTCAATGTTACTTTAGCACCTCTA-AAAAATC-AGAAGCCAAG 679
Query 648 TCAGCCTCTTATATCAAGAGCCATCAATCTTTCAGAAATCTT-TC--A-AGAGAAGATGT 703
| |||||||| | |||||| |||||||||| | | |||||| | | || ||| | |
Sbjct 680 TAAGCCTCTTTTGTCAAGAACCATCAATCTCACCGCAATCTTCCCGGATCGAAAAGCT-T 738
Query 704 ATGTTGGGTTCTCTTCAT-CAACAGGGAATC-TT-CTCAGTAACCATTATATACTT-GGA 759
||| ||||| || | | | || || || || | ||| | || || || ||| |||
Sbjct 739 TTGTCGGGTTTTCGGC-TGCGAC-TGG-TTCATTGATTAGTTATCAATACAT-CTTAGGA 794
Query 760 TGGAGTTTTAGTAGAAGAAAAGAACAATTACAGAG-CCTGAACCTCTCTACACTTCCTC- 817
|||||||| || ||||| | || |||||||| | || || |||||| |||||| |
Sbjct 795 TGGAGTTTCAGCAGAAGCAGAGTGTTGTTACAGAGTCTTG-ACATCTCTAAACTTCC-CA 852
Query 818 GGGTTCCTCTTCCTAAAGAGGaaaaaaaGAAATTATCTCCAT-TACTTATTGGTTTGGTC 876
|||||||| ||| |||| || ||||| |||||| | | |||||| | || |
Sbjct 853 AGGTTCCTCGTCC-CAAGA--AACCTGAGAAAACATCTCC-TCTGCTTATT-G-TT-CT- 904
Query 877 A-T-CTTATTAGT-G-ATTCCT-GTGGT-GATGGTTCTTGGAGGAGTTTATTGGTACAGG 930
| | ||| || | | | || | || | | |||||| |||||| |||||| |||||
Sbjct 905 ACTGGTTA-TACTCGCACTCATAGTAATCG-CGGTTCTAGGAGGATTTTATTTCTACAGA 962
Query 931 AGAAAGAAATATGCAGAAGTAAAAGAATGGTGGGAAAAGGAATACGGCCCACACCGATT- 989
|||||||| ||||||||||| ||||| |||||||| ||||| || |||| || ||
Sbjct 963 AGAAAGAAGTATGCAGAAGTTAAAGAGCCATGGGAAAAAGAATATGGTCCACTTCG-TTA 1021
Query 990 CTCCTAT-AAGTCTCTGTACAAAGCAACAA-ATGGGTTTCGTAAAGATTGTCGTGTTGGG 1047
|||||| || ||| | ||||||||||||| | |||||| ||||| ||||| ||||
Sbjct 1022 TTCCTATGAA-TCTTTATACAAAGCAACAAGA-GGGTTTAACAAAGAAGGTCGTCTTGGA 1079
Query 1048 AAAGGTGGGTTTGGAGAAGTCTACAAAGGAACTTTGCC-C--GGAGGCAGGCATATAGCT 1104
||||| || ||||||||||| || ||||||| | |||| | | ||| | | |||||||
Sbjct 1080 AAAGGCGGTTTTGGAGAAGTATATAAAGGAAGTCTGCCTCTTGTAGG-A-G-ATATAGCG 1136
Query 1105 GTGAAAAGACTATCCCACGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGTTGTA 1164
||||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1137 GTGAAGAGATTATCACATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCTGAAGTTGTG 1196
Query 1165 ACCATGGGAAATTTACAACATCG-GAA-CTTGGTTCCTCTTCTCGGGTATTGCAGGAGAA 1222
|| ||||||| |||||| || | ||| || ||||||||||||||||||||| ||| |||
Sbjct 1197 ACAATGGGAAGTTTACAGCA-CAAGAATCT-GGTTCCTCTTCTCGGGTATTGTAGGCGAA 1254
Query 1223 AATGTGAGTTACTTT-TGGTGTCTGAGTACATGCCCAACG-G-TAGCCTTGACCAGTACT 1279
|| | |||||| || |||| ||| |||||||| || | | |||| |||| || ||||
Sbjct 1255 AAGGGGAGTTA-TTGCTGGTTTCTAAGTACATGG--AAGGAGGTAGCGTTGATCAATACT 1311
Query 1280 TGTTTCATGAGGGA--AACC-CATCTCCTTCATGGTATCAAAGAATTTCTATTCTTAAG- 1335
||||||| || || |||| | ||| ||| |||| ||||||| | | || || ||
Sbjct 1312 TGTTTCAC-AGCGATCAACCGCCTCT--TTCTTGGTCTCAAAGACTCGCGATA-TTGAGA 1367
Query 1336 GACATTGCCTCAGCTCTCA-GTTACTTGCATACAGGAACCAAG-CAAGTTGTTTTGCACC 1393
|| || || || || || | ||||||||||||||||| ||| | ||||||||| | ||||
Sbjct 1368 GATATCGCATCTGCGCT-ATGTTACTTGCATACAGGAGCCA-GTCAAGTTGTTCTACACC 1425
Query 1394 GGGATATAAAAGCTTCTAACGTCATGTTGGATTCCGAGTT--CAACGGGAGGTTAGGTGA 1451
| ||||| ||||||||||| ||||||| || | || ||| || ||||| ||
Sbjct 1426 GAGATATCAAAGCTTCTAATATCATGTTAAATGAA-ACTTTACAA-GGCTTCTTAGGAGA 1483
Query 1452 TTTTGGAATGGCCAAGTTTCACGACCGTGGAACCAACTTATCTGCAACAGCCGCTGTGGG 1511
|||||| ||||| |||||| | || | |||| | ||| | ||||| ||||| ||||| ||
Sbjct 1484 TTTTGGGATGGCTAAGTTTGATGATCATGGAGCTAACCTCTCTGCCACAGCAGCTGTAGG 1543
Query 1512 AACCATAGGTTACATGGCAC-CTGAACTAATAACAATGGGCACGTCTATGAA-AACCGAT 1569
||||||||| |||||||| | | || |||| ||||| || || || | || |||||||
Sbjct 1544 AACCATAGGCTACATGGCGCTC-GAGCTAACAACAACAGGAACTTCAAC-AAGAACCGAT 1601
Query 1570 GTGTATGCTTTTGGTGCTTTTCTTCTTGAAGTAATTTGTGGCAGGCGACCAGTGGAACCT 1629
|||||||| |||||||| ||| | |||||||||| ||||| ||| ||||| | || ||
Sbjct 1602 GTGTATGCATTTGGTGCATTTATGCTTGAAGTAACATGTGGGAGGAGACCATTTGATCCC 1661
Query 1630 GAGCTACCAGTCG-GAAAGCAATATTTGGTCAAGTGGGTCTATGAATGCT-GGA-AAGAG 1686
|| | || |||| |||| | | |||| ||||||||||| | ||||| || ||| || ||
Sbjct 1662 GAAATGCCGGTCGAGAAA-CGACATTTAGTCAAGTGGGTTTGTGAAT-CTTGGAGAAAAG 1719
Query 1687 GCTTGCT-TATTCAA-GACCAGAGATCCAAGATTGGGAG-TAGAATTCTTACCCGAGGAA 1743
| || || || |||| | | | |||| |||||||| ||| || ||||| |||||||||||
Sbjct 1720 G-TT-CTCTAGTCAATG-CTATAGATACAAGATTGAGAGGTA-AATTCGTACCCGAGGAA 1775
Query 1744 GTCGAGATGGTTCTGAAACTTGGGTTACTCTGCACAAATGC-T-ATGCCAGAATCAAGGC 1801
||||| |||||||||||||| ||||||||||| |||| || | || |||||| |||| |
Sbjct 1776 GTCGAAATGGTTCTGAAACTCGGGTTACTCTGTACAA--GCATTATACCAGAAGCAAGAC 1833
Query 1802 CTG-CGATGGAACAAGTGGTGCAATAC 1827
|| | |||||||||||||||||||||
Sbjct 1834 CTAAC-ATGGAACAAGTGGTGCAATAC 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5