BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45420.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937206 jgi|Araly1|937206|scaffold_501397.1 3175 0.0
Ahg937205 jgi|Araly1|937205|scaffold_501396.1 2060 0.0
Ahg496169 jgi|Araly1|496169|fgenesh2_kg.8__1985__AT5G60320.1 564 1e-159
Ahg937203 jgi|Araly1|937203|scaffold_501394.1 532 3e-150
> Ahg937206 jgi|Araly1|937206|scaffold_501397.1
Length=2046
Score = 3175 bits (1719), Expect = 0.0
Identities = 1912/2007 (95%), Gaps = 6/2007 (0%)
Strand=Plus/Plus
Query 1 ATGGATTGTAGACTGCATCTGGTTTTGTTCTTCTCCTGTGTTTGTCTGATTTGCTTGTCA 60
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 21 ATGGATTGTAGACTGCATCTGGTTTTGATCTTCTCCTGTGTTTATCTGATTTGCTTGTCA 80
Query 61 GGTCAACAAG-AAACTGGGTTTGTCTACAATGGCTTCCATCAAGAAGATCTTTTTATTGA 119
|||||||||| |||| |||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 81 GGTCAACAAGAAAAC-GGGTTTGTATACAATGGCTTCGATCAAGCTGATCTTTTTATTGA 139
Query 120 TGGGATCGCCATGATCCTTCCTGGTGGACTTTTGCAGTTGACAAATGCTTCACAGTTGAA 179
|||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 140 TGGGCTCGCCAAGATCCTTCCTGGTGGACTTTTGCAGTTGACAAATGCTACGGAGTTGAA 199
Query 180 AATTGGTCATGCTTTTTTCAAGCAGCCCTTTGGTTTTGATCCATCTTCATCACTCTCATT 239
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 200 AATGGGTCATGCTTTTTTCAAGCAGCCATTTGGTTTTGATCCATCTTCATCCCTCTCATT 259
Query 240 CTATACACATTTTGTATGCGCGCTGGTGCCTCCTAAGTTCGGAGCTGAGGTAGGCCACGG 299
||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 260 CTATACACATTTTGTGTGCGCGCTGGTGCCTCCTAAGTTCGGAGCTGTGTTAGGGCACGG 319
Query 300 TATGGCCTTTGTTGTATCTCCTTCCATGAATTTCTCTCACGCGTTTCCAACTCAGTACTT 359
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 320 TATGGCCTTTGTTGTATCTCCTTCTATGAATTTCTCTCATGCGTTTCCAACTCAGTACTT 379
Query 360 GGGTGTCTTCAACAGCTCAACAAATGTGACTTCCTCTTCTCATCTGCTAGCTATTGAGCT 419
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 380 GGGCGTCTTCAACAGCTCAACAAATGTGACTTCCCCTTCTCATCTGCTAGCTATTGAGCT 439
Query 420 TGATACTGTTGAGACAGTAGATTTTCATGATCTAGAAAAGGCTCATGTTGGGATTGATGT 479
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGATACTGTTCAGACAGTAGAGTTTCATGATCTAGAAAAGGCTCATGTTGGGATTGATGT 499
Query 480 GAACAACCCGATATCTATTGAGTCTGCTCTCCCGTCTTACTTTTCTGACGCCTTGGGGAA 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GAACAACCCGATATCTGTTGAGTCTGCTCTCCCGTCTTACTTTTCTGACGCCTTGGGGAA 559
Query 540 GAATATAAGCATAAATC-TCGTGAGTGGGGAGCCTGTTCAGGTGTGGATTGATTATGATG 598
||||||||||||| ||| || |||||||||||||||||||||||||| | ||||||||||
Sbjct 560 GAATATAAGCATAGATCTTC-TGAGTGGGGAGCCTGTTCAGGTGTGGGTGGATTATGATG 618
Query 599 GATCGTTGCTAAATGTTACACTGGCCCCTATAGAGATTCAGAAACCAAACCGGCCTCTTA 658
||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 619 GATCGTTTCTAAATGTTACACTAGCCCCTATAGAAATCCAGAAACCAAACCGGCCTCTTA 678
Query 659 TATCAAGAGACATCAATCTGTCAGAAATTTTTCAAGATAAGATGTATATTGGGTTCTCTG 718
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 679 TATCAAGAGCCATCAATCTGTCAGAAATTTTTCAAGATAAGATGTATGTTGGGTTCTCTG 738
Query 719 GATCAAATGGGAGATTGACCAGTAACCAGTATATACTCGGGTGGAGTTTTAGTAAAAGCA 778
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 739 GATCGAATGGGAGATTGACCAGTAACCAGTATATACTTGGGTGGAGTTTTAGTAAAAGCA 798
Query 779 AAGAATTTATGCAGTCTCTGGACCTCTCTAAACTCCCCCAGGCTCCTATTCCTAGAAATG 838
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 799 AAGAACTTATGCAGTCTCTGGACCTCTCTAAACTCCCCAAGGCTCCTATTCCTAGAAATG 858
Query 839 AACAGGCCCCCGTTCCTAGAGAGGaaaaaaaGAAATTACATCCGCTACTTATTGGTTTGG 898
||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||
Sbjct 859 AACAGGCCCCCGTTCCTAGAGAGGAAAAAAATAAATTACTTCCACTTCTTATTGGTTTGG 918
Query 899 TCATCTTATTGGTGATCCCTGTGCTGATGGTTCTCGGAGGAGTTTATTGGTACAGAAGAA 958
||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 919 TCATCTTATTGCTGATCCTTGTGCTGATGGTTCTCGGAGGAGTTTACTGGTACAGAAGAA 978
Query 959 AGAAGTATGCAGAAGTAAAAGAATCATGGGAAAAGGAATACGGCCCACACCGATATTCCT 1018
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 979 AGAAGTATGCAGAAGTAAGAGAATCGTGGGAAAAGGAATACGGCCCACACCGATATTCCT 1038
Query 1019 ACAAGTCTCTGTACAAAGCAACAAATGGGTTTGTCAAAGATGCTCTTGTTGGTAAAGGTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1039 ACAAGTCTCTGTACAAAGCAACAAATGGGTTTGTCAAAGATGCTCTTGTTGGGAAAGGTG 1098
Query 1079 GGTTTGGAAAAGTCTACAAAGGAACTCTGCCCGGAGGCAGGCATATAGCTGTGAAAAGAC 1138
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1099 GGTTTGGAAAAGTTTACAAAGGAACTCTGCCTTCAGGCAAGCATATAGCTGTGAAAAGAC 1158
Query 1139 TATCCCATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGTCGTAACCATGGGAA 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1159 TATCCCATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGTCGTAACGATGGGAA 1218
Query 1199 ATATACAACATCGGAACTTGGTTCCTCTCCTCGGGTATTGCAGGAGAAAAGGTGAGTTAC 1258
|| |||||||||| |||||||||||||| || |||||||| || |||||||||||||| |
Sbjct 1219 ATTTACAACATCGCAACTTGGTTCCTCTTCTTGGGTATTGTAGAAGAAAAGGTGAGTTGC 1278
Query 1259 TACTGGTCTCTGAGTACATGTCCAACGGTAGTCTTGACCAGTACTTGTTTTATAACCAAA 1318
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1279 TACTGGTCTCTGAGTACATGCCCAACGGTAGTCTTGACCAGTACTTGTTTTGTAACCAAA 1338
Query 1319 ACCCATCTCCATCATGGTTGCAAAGAATTTCTATTCTTAAGGACATTGCCTCGGCTCTCA 1378
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1339 ACCCATCTCTTTCATGGTTGCAAAGAATTTCTATTCTTAAGGACATCGCCTCGGCTCTCA 1398
Query 1379 ATTACCTGCATTCAGGAGCCAATCCAGCTGTTTTGCACCGGGATATAAAAGCTTCTAATG 1438
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 ATTACCTGCATACAGGAGCCAATCCAGCTGTTTTGCACCGGGATATAAAAGCTTCTAATG 1458
Query 1439 TCATGTTAGATTCTGAGTATAATGGAAGATTAGGAGATTTTGGTATGGCCAAGTTTCAGG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 TCATGTTAGATTCTGAGTATAATGGAAGATTAGGAGATTTTGGTATGGCCAAGTTTCAGG 1518
Query 1499 ACCCCCAAG-GCAACCTATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCACCT 1557
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 ACCCCCAAGCG-AACCTATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCACCT 1577
Query 1558 GAGCTAATAAGAACTGGAACTTCTAAAGAAACTGATGTGTATGCCTTCGGTATCTTCCTT 1617
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1578 GAGCTAATAAGAACTGGAACTTCTAAAGAAACTGATGTGTATGCCTTTGGTGTTTTCCTT 1637
Query 1618 CTTGAAGTAACTTGTGGAAGGCGACCATTTGAACCCGAGTTACCAGTGCAAAAGAAATAT 1677
| |||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||
Sbjct 1638 CATGAAGTAACTTGTGGAAGGCGACCTTTTGAACCAGAGTTGCCAGCGCAAAAGAAATAT 1697
Query 1678 CTGGTCAAGTGGGTTTGTGAATGCTGGAAACAGGCTTCTTTGCTCGAGACCAGAGATCCA 1737
||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 1698 CTGGTCAAGTGGGTTTGCGAATGCTGGAAACATGCTTCTTTACTCAAGACCAGAGATCCA 1757
Query 1738 AAATTGGGAAGGGAATTCTTATCCGAGGAAGTCGAAATGGTTTTGAAACTTGGGTTGCTC 1797
||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1758 AAATTGGGAAGAGAATTCGTATCCGAAGAAGTCGAAATGGTTTTGAAACTTGGGTTGCTC 1817
Query 1798 TGCACAAATGATGTTCCAGAATCAAGGCCTGACATGGGACAAGTGATGCAATACCTAAGC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 TGCACAAATGATGTTCCAGAATCAAGGCCTGACATGGGACAAGTGATGCAATACCTAAGC 1877
Query 1858 CAGAAACAACCCTTACCGGATTTCTCAGCAGATTCTCCAGGTATTGGGGGTTTTATGCCA 1917
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1878 CGGAAACAACCCTTACCGGATTTCTCACCAGATTCTCCAGGTATTGGGGGTTTTATGCCG 1937
Query 1918 GTTTCAGTGGAACCATCATCTACCATTGGTATCCCAGATTCATCAATGCATGTTACTCAC 1977
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1938 GTTTCAGTGGAAGCAGCATCTACCATTGGTATCCCAGATTCATCAATGCATGTTAGTCAC 1997
Query 1978 TCGATCTTGGAAGGGTATGGAAGATGA 2004
|| ||||||||||||||||||||||||
Sbjct 1998 TCAATCTTGGAAGGGTATGGAAGATGA 2024
> Ahg937205 jgi|Araly1|937205|scaffold_501396.1
Length=2037
Score = 2060 bits (1115), Expect = 0.0
Identities = 1700/1973 (86%), Gaps = 78/1973 (4%)
Strand=Plus/Plus
Query 1 ATGGATTGTAGACTGCATCTGGTTTTGTTCTTCTCCTGTGTTTGTCTGATTTGCTTGTCA 60
|||| ||| ||||| |||||| |||| ||||||| || |||| |||||||| | |||||
Sbjct 21 ATGGCTTGCAGACTATATCTGGCTTTGATCTTCTCTTGCGTTTATCTGATTTTCCTGTCA 80
Query 61 GGTCAACAAGAAACTGGGTTTGTCTACAATGGCTTCCATCAAGAAGATCTTTTTATTGAT 120
||||||||||||| |||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 81 AGTCAACAAGAAACCGGGTTTGTCTACAATGGCTTTGATCAGGCAGATCTTTTTATCGAT 140
Query 121 GGGATCGCCATGATCCTTCCTGGTGGACTTTTGCAGTTGACAAATGCTTCACAGTTGAAA 180
|||||||||| |||||| |||| |||||||||||||||||||||| || || ||||| ||
Sbjct 141 GGGATCGCCAAGATCCTACCTGATGGACTTTTGCAGTTGACAAATACTACAGAGTTGCAA 200
Query 181 ATTGGTCATGCTTTTTTCAAGCAGCCCTTTGGTTTTGATCCATCTTCATCACTCTCATTC 240
|| ||||||||||| |||||| |||| |||| ||||||||||||||||||| | || |||
Sbjct 201 ATGGGTCATGCTTTCTTCAAGAAGCCATTTGATTTTGATCCATCTTCATCATTTTCGTTC 260
Query 241 TATACACATTTTGTATGCGCGCTGGTGCCTCCTAAGTTCGGAGCTGA-GGTAGGCCACGG 299
|||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||
Sbjct 261 TATACACATTTTGTGTGCGCGCTGGTGCCTCCTAAGTTGGGAGCTGATGGT-GGCCATGG 319
Query 300 TATGGCCTTTGTTGTATCTCCTTCCATGAATTTCTCTCACGCGTTTC-CAACTCAGTACT 358
||| | ||||||||||||||||||||| || ||||||| || | | ||||||||||||
Sbjct 320 TATCGTTTTTGTTGTATCTCCTTCCATGGATCTCTCTCATGC-ATACGCAACTCAGTACT 378
Query 359 TGGGTGTCTTCAAC-AGCTCAACAAATGTGACTTCCTCTTCTCATCTGCTAGCTATTGAG 417
|||| ||||||| | | || |||||||| |||||||||||| ||||| ||||||||||||
Sbjct 379 TGGGGGTCTTCAGCAACCT-AACAAATGGGACTTCCTCTTCACATCTACTAGCTATTGAG 437
Query 418 CTTGATACTGTTGAGACAGTAGATTTTCATGA-TCTAGAAAAGGCTCATGTTGGGATTGA 476
|| ||||| ||| |||||||||| ||| |||| | | |||||| |||||||||| |||||
Sbjct 438 CTCGATACCGTTAAGACAGTAGAGTTTAATGAGT-TGGAAAAGCCTCATGTTGGTATTGA 496
Query 477 TGTGAACAACCCGATATCTATTGAGTCTGCTCTCCCGTCTTACTTTTCTGACGCCTTGGG 536
| |||||| ||| |||||| |||| |||||||| || ||||||||||||| ||||| ||
Sbjct 497 TTTGAACAGCCCAATATCTGTTGAATCTGCTCTGCCATCTTACTTTTCTGGCGCCTCAGG 556
Query 537 GAAGAATATAAGCATAAATC-TCGTGAGTGGGGAGCCTGTTCAGGTGTGGATTGATTATG 595
|||||||||||||||| ||| || ||||||||||| || | ||||| ||| | ||||| |
Sbjct 557 GAAGAATATAAGCATAGATCTTC-TGAGTGGGGAGGCTATCCAGGTTTGGGTGGATTACG 615
Query 596 ATGGATCGTTGCTAAATGTTACACTGGCCCCTATAGAGATTCAGAAACCAAACCGGCCTC 655
|||| |||||||||||||||||||||||||||||||| || ||||| ||||| | |||||
Sbjct 616 ATGGCTCGTTGCTAAATGTTACACTGGCCCCTATAGAAATCCAGAAGCCAAATCAGCCTC 675
Query 656 TTATATCAAGAGACATCAATCTGTCAGAAATTTTTCAAGATAAGATGTATATTGGGTTCT 715
|||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| |||||||||
Sbjct 676 TTATATCAAGAGCCATCAATCTTTCAGAGATTTTTCAAGAGAAGATATATGTTGGGTTCT 735
Query 716 CTGGATCAA-ATGGGAGAT-TGAC-CAGTAACCAGTATATACTCGGGTGGAGTTTTAGTA 772
|| ||||| | |||| || | | |||||||| |||||||| ||||||||||||||||
Sbjct 736 CTTCATCAACA-GGGA-ATCT-TCTTAGTAACCATTATATACTTGGGTGGAGTTTTAGTA 792
Query 773 AAAGCAAAG-A-ATTTATGCAG-TCTCTGGACCTCTCTAAACTCCCCCAGGCTCCTATTC 829
|||||||| | | ||| ||| | |||||||||||||||||||| || | ||||
Sbjct 793 GAAGCAAAGAACAATTA--CAGAAC-CTGGACCTCTCTAAACTCCCTCA-G-----ATTC 843
Query 830 CTAGAAATGAACAGGCCCCCGTTCCTAGAGAGGaaaaaaaGAAATTA-CATCCGCTACTT 888
| | | |||||||||||||||||||||||||| | ||| ||||||
Sbjct 844 C------T-----------C-TTCCTAGAGAGGAAAAAAAGAAATTATC-TCCACTACTT 884
Query 889 ATTGGTTTGGTCATCTTATTGGTGATCCCTGTGCTGATGGTTCTCGGAGGAGTTTATTGG 948
|||||||||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||
Sbjct 885 ATTGGTTTGGTCATCTTATTAGTGATTCCTGTGCTGATGGTTCTTGGAGGAATGTATTGG 944
Query 949 TACAGAAGAAAGAAGTATGCAGAAGTAAAAGAATCATGGGAAAAGGAATACGGCCCACAC 1008
| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 945 TTCAGAAGAAAGAAATATGCAGAAGTAAAAGAATGGTGGGAGAAGGAATACGGCCCACAC 1004
Query 1009 CGATAT-TCCTACAAGTCTCTGTACAAAGCAACAAATGGGTTT-GTCAAAGA-TGCTCTT 1065
|||| | ||||| |||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 1005 CGAT-TCTCCTATAAGTCTCTGTACAAAGCAACAAATGGGTTTCGT-AAAGATTG-TCGT 1061
Query 1066 GTTGGTAAAGGTGGGTTTGGAAAAGTCTACAAAGGAACTCTGCCCGGAGGCAGGCATATA 1125
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GTTGGGAAAGGTGGGTTTGGAGAAGTCTACAAAGGAACTCTGCCCGGAGGCAGGCATATA 1121
Query 1126 GCTGTGAAAAGACTATCCCATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGTC 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GCTGTGAAAAGACTATCCCATGATGCAGAGCAAGGGATGAAACAGTTTGTGGCAGAAGTT 1181
Query 1186 GTAACCATGGGAAATATACAACATCGGAACTTGGTTCCTCTCCTCGGGTATTGCAGGAGA 1245
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1182 GTAACCATGGGAAATTTACAACATCGGAACTTGGTTCCTCTTCTCGGGTATTGCAGGAGA 1241
Query 1246 AAAGGTGAGTTACTACTGGTCTCTGAGTACATGTCCAACGGTAGTCTTGACCAGTACTTG 1305
||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1242 AAATGTGAGTTGCTTCTGGTCTCTGAGTACATGCCCAACGGTAGTCTTGACCAGTACTTG 1301
Query 1306 TTTTATAACCAAAACCCATCTCCATCATGGTTGCAAAGAATTTCTATTCTTAAGGACATT 1365
||| || || ||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 1302 TTTCATGACGAAAACCCATCTCCTTCATGGTTTCAAAGGATTTCTATTCTTAAGGACATT 1361
Query 1366 GCCTCGGCTCTCAATTACCTGCATTCAGGAGCCAATCCAGCTGTTTTGCACCGGGATATA 1425
|| |||||||| | |||||||||| ||||| |||| | || ||||||||| |||||||||
Sbjct 1362 GCATCGGCTCTTAGTTACCTGCATACAGGAACCAAGCAAGTTGTTTTGCATCGGGATATA 1421
Query 1426 AAAGCTTCTAATGTCATGTTAGATTCTGAGTAT-AATGGAAGATTAGGAGATTTTGGTAT 1484
|||||||| || |||||||||||||| |||| | || || || ||||| |||||||| ||
Sbjct 1422 AAAGCTTCGAACGTCATGTTAGATTCCGAGT-TCAACGGGAGGTTAGGTGATTTTGGCAT 1480
Query 1485 GGCCAAGTTTCAGGACCCCCAAGGCAACCTATCTGCAACAGCTGCTGTGGGAACCATAGG 1544
|||||||||||| |||| || |||| |||||||||| || |||||||||||||||||
Sbjct 1481 GGCCAAGTTTCACGACCGTGGAGCCAACTTATCTGCAACTGCCGCTGTGGGAACCATAGG 1540
Query 1545 TTACATGGCACCTGAGCTAATAAGAACTGG-AACTTCTAAAGAAA-CTGATGTGTATGCC 1602
||||||||||||||||||||||| || ||| ||| |||| |||| | ||||||||||||
Sbjct 1541 TTACATGGCACCTGAGCTAATAACAA-TGGGAACATCTAT-GAAAACCGATGTGTATGCC 1598
Query 1603 TTCGGTATCTT-CCTTCTTGAAGTAACTTGTGGAAGGCGACCATTTG-AACCCGAGTTAC 1660
|| ||| ||| |||||||||||||||||||||||| ||||| | || |||| ||| |||
Sbjct 1599 TTTGGTG-CTTTCCTTCTTGAAGTAACTTGTGGAAGACGACC-TGTGGAACCTGAGCTAC 1656
Query 1661 CAGT-GCAAAAGAAATATCTGGTCAAGTGGGTTTGTGAATGCTGGAAACAGGCTTCTTTG 1719
|||| | ||| | ||||| ||||||||||||| | ||||||||||||||||||| |||
Sbjct 1657 CAGTTGGAAA-GCAATATTTGGTCAAGTGGGTCTACGAATGCTGGAAACAGGCTTGTTTA 1715
Query 1720 CTCGAGACCAGAGATCCAAAATTGGGAAGG-GAATTCTTATCCGAGGAAGTCGAAATGGT 1778
||||||||||||||||||| ||||||| || ||| ||||| ||| ||||||||| |||||
Sbjct 1716 CTCGAGACCAGAGATCCAAGATTGGGA-GGAGAACTCTTACCCGTGGAAGTCGAGATGGT 1774
Query 1779 TTTGAAACTTGGGTTGCTCTGCACAAATGATGTTCCAGAATCAAGGCCTGACA-TGGGAC 1837
| ||||||||||||| ||||||||||||| | | |||||||||||||||| || ||| ||
Sbjct 1775 TCTGAAACTTGGGTTACTCTGCACAAATGCTATGCCAGAATCAAGGCCTG-CAATGGAAC 1833
Query 1838 AAGTGATGCAATACCT-AAGCCAGAAACA-ACCCTTACCGGATTTCTCAGCAGAT-T-CT 1893
||||| |||||||||| || || | | | | ||||||| |||||||| || | | | ||
Sbjct 1834 AAGTGGTGCAATACCTTAA-CCGGGA-CTTAGCCTTACCAGATTTCTC-GCCG-TCTACT 1889
Query 1894 CCAGGTATTGGGGGTTTTATGCCAGTTTCAGTGGAACCATCATCTACCATTGG 1946
|||||||| |||| |||||||||||||||| |||| ||| |||| |||||||
Sbjct 1890 CCAGGTATCGGGGCTTTTATGCCAGTTTCAATGGATGCATTATCTGCCATTGG 1942
> Ahg496169 jgi|Araly1|496169|fgenesh2_kg.8__1985__AT5G60320.1
Length=1995
Score = 564 bits (305), Expect = 1e-159
Identities = 781/1005 (78%), Gaps = 56/1005 (6%)
Strand=Plus/Plus
Query 928 GTTCTCGGAGGAGTTTA-TTGGTACAGAAGAAAGAAGTATGCAGAAGTAAAAGAATCATG 986
||||| ||||||||||| || ||||| ||||| |||||||||||||| | |||| ||||
Sbjct 922 GTTCTTGGAGGAGTTTACTT-ATACAGGAGAAAAAAGTATGCAGAAGTCAGAGAAGCATG 980
Query 987 GGAAAAGGAATACGGCCCACACCGATATTCCTACAAGTCTCTGTACAAAGCAACAAATGG 1046
|||||| |||||||| || || || | ||| || || ||||| |||||||||||||| ||
Sbjct 981 GGAAAAAGAATACGGTCCGCATCGGTTTTCTTATAAATCTCTATACAAAGCAACAAAAGG 1040
Query 1047 GTTTGTCAAAGATGCTC-TTGTTGGTAAAGGTGGGTTTGGAAAAGTCTACAAAGGAACTC 1105
||||| |||||||| || || | || ||||| || |||||| ||||||||| ||||| ||
Sbjct 1041 GTTTGACAAAGATGGTCGTT-TAGGAAAAGGCGGTTTTGGAGAAGTCTACAGAGGAAATC 1099
Query 1106 T-GCCCG-G-AGGCAGGCATATAGCTGTGAAA-AGACTATCCCATGATGCAGAGCAAGGG 1161
| |||| | || | | ||||||| || ||| ||| | | ||| |||||| |||||||
Sbjct 1100 TACCCCGCGTTGG-A-G-ATATAGCGGT-AAAGAGAGTGTGCCACGATGCAAAGCAAGGC 1155
Query 1162 ATGAAACAGTTTGTGGCAGAAGTCGTAACCATGGGAAATATACAA-CATCGGAACTTGGT 1220
||||||||||||||||| ||||| || || ||||||| | || || || ||||| |||||
Sbjct 1156 ATGAAACAGTTTGTGGCTGAAGTAGTGACTATGGGAAGTTTA-AAGCACCGGAATTTGGT 1214
Query 1221 TCCTCTCCTCGGGTATTGCAGGAGAAAAGGTG-AGTTACTACTGGTCT-CTGAGTACATG 1278
|||||| |||||||| |||||||| ||||| | | || || ||||||| | ||||| |||
Sbjct 1215 TCCTCTTCTCGGGTACTGCAGGAGGAAAGGAGAACTT-CTTCTGGTCTAC-GAGTATATG 1272
Query 1279 TCCAACGGTAGTCTTGACCAGTACTTGTTTTATA-ACCAAAACCCATCTCCATCATGGTT 1337
| || || |||||||| || ||||||||| | | | |||| ||| ||| ||||||
Sbjct 1273 TGTAATGGCAGTCTTGATCAATACTTGTTTCACAGA-AAAAATCCAGCTCTTTCATGGCC 1331
Query 1338 GCAAAGAAT-TTCTATTCTT-AAGGACATTGCCTCGGCTCTCAATTACCTGCATTCAGGA 1395
|||||| | || ||| || || || || ||||| ||||||| |||||||||| |||||
Sbjct 1332 GCAAAGGCTAGTC-ATT-TTGAAAGATATAGCCTCTGCTCTCAGTTACCTGCATACAGGA 1389
Query 1396 GCCAATCCAGCTGTTTTGCACCGGGATATAAAAGCTTCTAATGTCATGTTAGATTCTGAG 1455
|| |||| || ||| || ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1390 GCTAATCAAGTTGTATTACACCGAGATATAAAAGCTTCTAATGTCATGTTAGATTCTAAT 1449
Query 1456 TAT-AATGGAAGATTAGGAGATTTTGGTATGGCCA-AGTTTCAGGACCCCCAAGGCAACC 1513
| | ||||||||||||||||||||||| ||||| | | ||| | || || | |
Sbjct 1450 T-TCAATGGAAGATTAGGAGATTTTGGAATGGCGAGA-TTTGAAGATTATGGAGATAGCT 1507
Query 1514 TATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCACCTGAGCTAATAAGAACTG 1573
|| |||||||||| ||||| ||||| || |||||||||||||||||||||| || || ||
Sbjct 1508 TACCTGCAACAGCAGCTGTAGGAACAATGGGTTACATGGCACCTGAGCTAACAACAA-TG 1566
Query 1574 GAA-CTTCTA-AAGAAACTGATGTGTATGCCTTCGGTATCTTCCTT-CTTGAAGTAACTT 1630
|| ||| || ||||| | ||||| ||||| || ||| ||| | | |||||||||| ||
Sbjct 1567 AAAACTTGTACAAGAA-CAGATGTTTATGCATTTGGTG-CTTTCATGCTTGAAGTAAGTT 1624
Query 1631 GTGGAAGGCGACCATTTGAACCCGAG-TTACCAG-TGCA-AAA-GAAATATCTGGTCAAG 1686
||||| || |||| || || ||| || || | || || | ||| | || | || ||||
Sbjct 1625 GTGGACGGAGACCGTTAGATCCCAAGATTTC-AGCTG-AGAAACGGCAT-T-TGATCAAA 1680
Query 1687 TGGGTTTGTGAATGCTGGAAACAGGC-TTCTTTGCTCGA-GACCAGAGATCCAAAATTGG 1744
||||||||||| ||||||| | ||| |||| || | || | | | |||| || |||||
Sbjct 1681 TGGGTTTGTGATTGCTGGAGA-AGGGATTCTCTGGTTGATG-CTATAGATAGAAGATTGG 1738
Query 1745 GAAGGGAATT-CTTATCCGAGGAAG-TCGAAATGGTTTTGAAACTTGGGTTGCTCTGCAC 1802
|| || || | || | | ||||||| | ||||| ||| | |||||||| ||||| |||||
Sbjct 1739 GA-GGTAAATACTCAGCAGAGGAAGCT-GAAATTGTTCTAAAACTTGGATTGCTTTGCAC 1796
Query 1803 AAATGATG-TTCCAGAATCAAGGCCTGAC-ATGGGACAAGTGATGCAATACCTA-AGCCA 1859
||| ||| || ||||||| || || || |||| ||||||| | || ||| || | |
Sbjct 1797 AAAC-ATGGTTGCAGAATCTAGACCC-ACCATGGAACAAGTGGTACAGTACATATA-CTG 1853
Query 1860 GAAACAACCCTTACCGGATTTCTCAGCAGATTCTCCAGGTATTGG 1904
||| | || || || |||||||| |||| |||||||| |||||
Sbjct 1854 GAATCTTCCATTGCCTAATTTCTCACCAGAGTCTCCAGGAATTGG 1898
> Ahg937203 jgi|Araly1|937203|scaffold_501394.1
Length=2083
Score = 532 bits (288), Expect = 3e-150
Identities = 774/1001 (77%), Gaps = 64/1001 (6%)
Strand=Plus/Plus
Query 927 GGTTCTCGGAGGAGTTTATTGGTACAGAAGAAAGAAGTATGCAGAAGTAAAAGAATCATG 986
|||||| |||||| |||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 935 GGTTCTAGGAGGATTTTATTTCTACAGAAGAAAGAAGTATGCAGAAGTTAAAGAGCCATG 994
Query 987 GGAAAAGGAATACGGCCCACACCGATATTCCTA-CAAGTCTCTGTACAAAGCAACAA-AT 1044
|||||| ||||| || |||| || |||||||| || ||| | ||||||||||||| |
Sbjct 995 GGAAAAAGAATATGGTCCACTTCGTTATTCCTATGAA-TCTTTATACAAAGCAACAAGA- 1052
Query 1045 GGGTTTGTCAAAGATGCTCTTGTTGGTAAAGGTGGGTTTGGAAAAGTCTACAAAGGAACT 1104
|||||| |||||| | || | |||| ||||| || |||||| |||| || ||||||| |
Sbjct 1053 GGGTTTAACAAAGAAGGTCGTCTTGGAAAAGGCGGTTTTGGAGAAGTATATAAAGGAAGT 1112
Query 1105 CTGCC-C--GGAGGCAGGCATATAGCTGTGAAAAGACTATCCCATGATGCAGAGCAAGGG 1161
||||| | | ||| | | ||||||| ||||| ||| |||| ||||||||||||||||||
Sbjct 1113 CTGCCTCTTGTAGG-A-G-ATATAGCGGTGAAGAGATTATCACATGATGCAGAGCAAGGG 1169
Query 1162 ATGAAACAGTTTGTGGCAGAAGTCGTAACCATGGGAAATATACAACATCG-GAA-CTTGG 1219
||||||||||||||||| ||||| || || ||||||| | |||| || | ||| || ||
Sbjct 1170 ATGAAACAGTTTGTGGCTGAAGTTGTGACAATGGGAAGTTTACAGCA-CAAGAATCT-GG 1227
Query 1220 TTCCTCTCCTCGGGTATTGCAGGAGAAAAGGTGAGTTACTACTGGTCTCTGAGTACATGT 1279
||||||| ||||||||||| ||| ||||||| |||||| | ||||| ||| ||||||||
Sbjct 1228 TTCCTCTTCTCGGGTATTGTAGGCGAAAAGGGGAGTTATTGCTGGTTTCTAAGTACATGG 1287
Query 1280 CCAACG-G-TAGTC-TTGACCAGTACTTGTTTTATAACCAA-AACC-CATCTCCATCATG 1334
|| | | ||| | |||| || ||||||||| | | | | |||| | ||| || ||
Sbjct 1288 --AAGGAGGTAG-CGTTGATCAATACTTGTTTCACAGCGATCAACCGCCTCTT--TCTTG 1342
Query 1335 GT-TGCAAAGAATTTCTATTCTTAAG-GACATTGCCTCGGCTCTCAA-TTACCTGCATTC 1391
|| | |||||| | | || || || || || || || || || | |||| ||||| |
Sbjct 1343 GTCT-CAAAGACTCGCGATA-TTGAGAGATATCGCATCTGCGCT-ATGTTACTTGCATAC 1399
Query 1392 AGGAGCCAATCCAGCTGTTTTGCACCGGGATATAAAAGCTTCTAATGTCATGTTAGATTC 1451
|||||||| || || |||| | ||||| ||||| |||||||||||| |||||||| ||
Sbjct 1400 AGGAGCCAGTCAAGTTGTTCTACACCGAGATATCAAAGCTTCTAATATCATGTTAAATGA 1459
Query 1452 TGAGTATA-ATGGAAGATTAGGAGATTTTGGTATGGCCAAGTTTCAGGACCCCCAAGGC- 1509
| | || | || |||||||||||||| ||||| |||||| | || | || |
Sbjct 1460 A-ACTTTACAAGGCTTCTTAGGAGATTTTGGGATGGCTAAGTTTGATGATCATGGAG-CT 1517
Query 1510 AACCTATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCAC-CTGAGCTAATAAG 1568
||||| ||||| ||||| ||||| ||||||||||| |||||||| | | ||||||| ||
Sbjct 1518 AACCTCTCTGCCACAGCAGCTGTAGGAACCATAGGCTACATGGCGCTC-GAGCTAACAAC 1576
Query 1569 AACTGGAACTTCTA-AAGAAACTGATGTGTATGCCTTCGGT--ATCTTCCTTCTTGAAGT 1625
||| |||||||| | ||||| | ||||||||||| || ||| || || | ||||||||
Sbjct 1577 AACAGGAACTTCAACAAGAACC-GATGTGTATGCATTTGGTGCAT-TTA-TGCTTGAAGT 1633
Query 1626 AACTTGTGGAAGGCGACCATTTGAACCCGAGTTACCAGT-GCA-AAA-GAAATATCTGGT 1682
||| ||||| ||| |||||||||| ||||| | || || | | ||| || || | | ||
Sbjct 1634 AACATGTGGGAGGAGACCATTTGATCCCGAAATGCCGGTCG-AGAAACGACAT-T-TAGT 1690
Query 1683 CAAGTGGGTTTGTGAATGCT-GGA-AACAGGCTTCTTT-GCTCGA-GACCAGAGATCCAA 1738
||||||||||||||||| || ||| || ||| |||| | | || | | | | |||| |||
Sbjct 1691 CAAGTGGGTTTGTGAAT-CTTGGAGAAAAGG-TTCTCTAG-TCAATG-CTATAGATACAA 1746
Query 1739 AATTGGGAAGGGAA-TTCTTATCCGAGGAAGTCGAAATGGTTTTGAAACTTGGGTTGCTC 1797
|||| || || || ||| || |||||||||||||||||||| ||||||| ||||| |||
Sbjct 1747 GATTGAGA-GGTAAATTCGTACCCGAGGAAGTCGAAATGGTTCTGAAACTCGGGTTACTC 1805
Query 1798 TGCACAA--ATGATGTTCCAGAATCAAGGCCTGACATGGGACAAGTGATGCAATACCTAA 1855
|| |||| || || |||||| |||| ||| |||||| ||||||| |||||||| |||
Sbjct 1806 TGTACAAGCATTATA--CCAGAAGCAAGACCTAACATGGAACAAGTGGTGCAATACATAA 1863
Query 1856 GCCAGAAAC-AACCCTTACCGGATTTCTCAGCAGATTCTCC 1895
| ||| || || || || || ||||| ||||| ||||
Sbjct 1864 AC-AGACACCAAAGATTGCCTGAGTTCTCTCCAGATACTCC 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5