BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45440.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937207 jgi|Araly1|937207|scaffold_501398.1 3243 0.0
Ahg937206 jgi|Araly1|937206|scaffold_501397.1 512 4e-144
Ahg917642 jgi|Araly1|917642|Al_scaffold_0008_2393 122 7e-27
> Ahg937207 jgi|Araly1|937207|scaffold_501398.1
Length=2053
Score = 3243 bits (1756), Expect = 0.0
Identities = 1930/2015 (96%), Gaps = 7/2015 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGGATTGCATCTGATCTGGGTGATCTTCTGTCTTCATCTGATTTGCATCTCA 60
||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct 21 ATGGCTCAAGGATTGCATCTGATGTGGGTGATCTTCTGTGTTCATCTGATTTGCGTCTCA 80
Query 61 AGTCAACAAGAGACAGAGTTTATCTTTAATGGCTTTGGTCAAGCAGATCTTTATACTGAT 120
|||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 81 AGTCAACAGGAGACAGAGTTTATCTACAATGGCTTTGGCCAAGAAGATCTTTATACTGAT 140
Query 121 GGGGTAGCCAAAATTCTTCCCAACGGACTGTTGCAGTTGACCGATGGTTCCGGACAGAAA 180
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 141 GGGGTTGCCAAAATTCTTCCTAAAGGACTGTTGCAGTTGACCGATGGTTCCGGACAGAAA 200
Query 181 ATGGGACATGCCTTCTTCAAGAAGCCTTTTGAGTTCAAGTCACCTAG-ATCATTCTCTTT 239
||||| |||||||||||||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 201 ATGGGTCATGCCTTCTTCAAGAAGCCTTTTGAGTTCAATTCATCT-GAATCATTCTCTTT 259
Query 240 CTCAACACATTTTGTGTGTGCGCTGGTGCCTAAGCCAGGATTTATTGGTGGTCACGGTAT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 260 CTCAACACATTTTGTGTGTGCGCTGGTGCCTAAGCCAGGATTTATTGGTGGTCATGGCAT 319
Query 300 TGCCTTTGTTTTATCTGCTTCCATGGATCTCACACAGGCAGATGCAACACAGTTCTTGGG 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 320 TGCCTTTGTTTTATCTGCTTCCATGGATCTCACACATGCAGACGCAACACAGTTCTTGGG 379
Query 360 ACTTTTTAACATCTCGACTCAAGGATCCCCTTCTTCTCATCTAGTTGCTGTTGAGCTAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACTTTTTAACATCTCGACTCAAGGATCCCCTTCTTCTCATCTAGTTGCTGTTGAGCTAGA 439
Query 420 CACTGCCCTCAGCGCTGAGTTTGATGACATTGATGCCAATCATGTAGGAATTGATGTCAA 479
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 440 CACTGCCCTCAGTGCTGAGTTTGATGACATTGATGCCAATCATGTTGGAATTGATGTCAA 499
Query 480 CAGCCTTATGTCTATCGCATCTACTCCGGCTGCTTACTTTTCCGAGATAGATGGGGAGAA 539
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 500 TAGCCTTATGTCTATCGCATCTACTTCGGCGGCTTACTTTTCCGAGATAGATGGGGAGAA 559
Query 540 CAAAAGCATAAAGCTTTTGAGTGGAGATCCTATTCAAGTTTGGGTGGACTATGGAGGGAA 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 CAAAAGCATAAAGCTTTTAAGTGGAGATCCTATTCAAGTTTGGGTGGACTATGGAGGAAA 619
Query 600 TGTACTTAATGTTACGCTGGCCCCTCTTAAAATTCAGAAGCCAAGCCGGCCTCTTTTGTC 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGTACTTAATGTTACACTGGCCCCTCTTAAAATTCAGAAGCCAAGCCGGCCTCTTTTGTC 679
Query 660 AAGATCCATCAACCTTTCAGAAACATTTCCAGATAGAAAGTTCTTTCTTGGGTTCTCTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AAGATCCATCAACCTTTCAGAAACATTTCCAGATAGAAAGTTCTTTCTTGGGTTCTCTGG 739
Query 720 AGCAACAGGGACATTGATCAGCTACCAATACATACTCGGGTGGAGTTTAAGCAGAAACAA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 740 AGCAACAGGGACATTGATCAGCTACCAATACATACTCGGGTGGAGTTTTAGCAGAAACAA 799
Query 780 GGTGTCATTGCAGACCCTTGATGTCACTAAACTTCCTCGAGTTCCTCGTCATAGAG-CTA 838
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 800 GGTGTCATTGCAGACCCTTGATGTCACTAAACTTCCTCGAGTTCCTCATCCTA-AGGCTA 858
Query 839 AAAATAAGGGACCATCAGTGGTCCTTATTGTTCTACTCATTTTACTGGCAATCATAGTGT 898
|||||||| ||||||||| ||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 859 AAAATAAGAGACCATCAGGGGTGCTTATTGTTCTGCTCATTTTTCTGGCAATCATAGTAT 918
Query 899 TTTTGGCTCTTGGAGCAGCTTATGTCTACAGAAGAAGGAAATATGCAGAAATAAGAGAAG 958
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 919 TTTTGGCTCTTGGAGCAGCTTATGTTTACAGGAGAAGGAAATATGCAGAAATAAGAGAAG 978
Query 959 AATGGGAAAAAGAATATGGCCCACACCGTTTTTCTTATAAAGATCTGTACATTGCAACGA 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 979 AATGGGAAAAAGAATATGGTCCACACCGTTTTTCTTATAAAGATCTGTACACTGCAACGA 1038
Query 1019 ATGGGTTTAACAAGGATGGACTTCTTGGAAAGGGAGGTTTTGGAAAAGTGTACAAAGGAA 1078
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1039 ATGGGTTTAACAAGGATGGACTTCTTGGAAAAGGAGGTTTTGGAAAAGTTTACAAAGGAA 1098
Query 1079 CTCTGCCTTCCAAAGGACAAATAGCAGTGAAAAGAGTGTCCCATGATGCAGAGGAAGGGA 1138
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1099 CTCTGCCTTCCAAAGGACAAATAGCAGTGAAAAGAGTGTCCCACGATGCAGAGGAAGGGA 1158
Query 1139 TGAAGCAGTTTGTGGCTGAAATCGTGAGCATGGGTAATCTGAAGCACAAGAATATGGTTC 1198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1159 TGAAGCAGTTTGTGGCTGAAATCGTGAGCATGGGCAATCTGAAGCACAAGAATATGGTTC 1218
Query 1199 CACTTCTTGGGTATTGTAGAAGAAAAGGTGAGTTACTTCTGGTATCTGAATACATGCCCA 1258
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CACTTCATGGGTATTGTAGAAGAAAAGGTGAGTTACTTCTGGTATCTGAATACATGCCCA 1278
Query 1259 ATGGTAGCCTTGACCAATACTTATTCAATGACGAAAAACCGCCATTTTCATGGCGTCGAA 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 ATGGTAGTCTTGACCAATACTTATTCAATGACGAAAAACCGCCATTTTCATGGCGTCGAA 1338
Query 1319 GACTTTTAATCATTAAAGATATAGCTACAGCTCTCAATTACATGCATACAGGAGCTCCCC 1378
||||| ||||||| || ||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 1339 GACTTGTAATCATCAAGGATATTGCTTCTGCTCTCAATTACATGCATACAGGAGCTCCCC 1398
Query 1379 AAGTTGTTCTCCACCGGGATATCAAGGCCTCTAACGTTATGTTAGACACCGAATTTAATG 1438
|||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||
Sbjct 1399 AAGTTGTTCTCCACCGGGATATCAAGGCTTCTAATGTTATGTTAGACGCTGAATTTAATG 1458
Query 1439 GAAGGTTAGGGGACTTTGGTATGGCAAGGTTTCATGATCATGGGAAAGACCCTGCTACAA 1498
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1459 GAAGGTTAGGGGACTTTGGTATGGCAAGGTTTCATGATCATGGGGCAGACCCTGCTACAA 1518
Query 1499 CTGCTGCTGTGGGAACCATTGGCTACATGGCACCAGAGCTTGCTACAGTGGGAGCTTGCA 1558
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1519 CTGCTGCTGTGGGAACCATTGGCTACATGGCACCAGAGCTTTCTACAGGGGGAGCTTGCA 1578
Query 1559 CTGCCACGGATGTGTATGGCTTTGGTGCCTTTTTACTTGAAGTAACATGTGGGAGGAGAC 1618
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 CGGCCACTGATGTGTATGGCTTTGGTGCCTTTTTACTTGAAGTAACATGTGGGAGGAGAC 1638
Query 1619 CTGTGGAACCTGGGTTGTCAGCTGAAAGATGGTATATAGTTAAGTGGGTCTGCGAATGTT 1678
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1639 CTGTGGAACCTGGGTTGCCAGCTGAAAGATGGTATCTAGTTAAGTGGGTCTGCGAATGTT 1698
Query 1679 GGAAAATGGCTTCTTTGCTAGGAGCAAGAGATCCAAGAATGAGAGGTGAAATCTCAGCTG 1738
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1699 GGAAAATGGCTTCTTTGCTCGGAGCTAGAGATCCAAGAATGAGAGGTGAAATCTCAGCTG 1758
Query 1739 AGGAAGTTGAAATGGTACTGAAACTAGGGTTGCTTTGCACAAATGGTGTGCCAGACCTGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1759 AGGAAGTTGAAATGGTACTGAAACTAGGGTTGCTTTGCACAAATGGTGTGCCAGAACTGA 1818
Query 1799 GACCTTCTATGGAAGATATTGTTCAATACTTAAACGGAAGCTTAGAGCTGCCTGATATAT 1858
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1819 GACCTTCTATGGAAGACATTATTCAATACTTAAACGGAAGCTTAGAGCTGCCTGATATCT 1878
Query 1859 CTCCAAATTCTCCTGGTATCGGGTCCTTTACCCCGCTGATTATCGGATCAAACCCCC-C- 1916
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1879 CTCCAAATTCTCCTGGTATCGGGTCCTTTACCCCGCTGATTATCGGATCTAACCCCCTCC 1938
Query 1917 -TGTCTCCCCCAGTACCAAGACCTTTTACACTTCTTCCTCAGCCAACGATTCCACATTTG 1975
|||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||||
Sbjct 1939 CTGTCTCCCCCAGTACCAACACCTTCTACTCTTCTTCCTCAGCCAACGACTCTACATTTG 1998
Query 1976 TCACTCACTCAATTATCCATGGGGATGGACGGTAA 2010
|||||||||| ||| |||||||| |||||||||||
Sbjct 1999 TCACTCACTCGATTGTCCATGGGCATGGACGGTAA 2033
> Ahg937206 jgi|Araly1|937206|scaffold_501397.1
Length=2046
Score = 512 bits (277), Expect = 4e-144
Identities = 719/924 (78%), Gaps = 64/924 (7%)
Strand=Plus/Plus
Query 902 TGGCTCTTGGAGCAGCTTA-TGTCTACAGAAGAAGGAAATATGCAGAAATAAGAGAAGAA 960
||| ||| |||| || ||| || |||||||||| ||| ||||||||| ||||||||
Sbjct 946 TGGTTCTCGGAGGAGTTTACTG-GTACAGAAGAAAGAAGTATGCAGAAGTAAGAGAATCG 1004
Query 961 TGGGAAAAAGAATATGGCCCACACCGTTTTTCTTATAAAG-ATCTGTACATTGCAACGAA 1019
|||||||| ||||| ||||||||||| | ||| || ||| |||||||| ||||| ||
Sbjct 1005 TGGGAAAAGGAATACGGCCCACACCGATATTCCTA-CAAGTCTCTGTACAAAGCAACAAA 1063
Query 1020 TGGGTTTAACAAGGATGGACTTCTT-GGAAAGGGAGGTTTTGGAAAAGTGTACAAAGGAA 1078
||||||| ||| |||| ||| || ||||| || || ||||||||||| ||||||||||
Sbjct 1064 TGGGTTTGTCAAAGATGCTCTTGTTGGGAAA-GGTGGGTTTGGAAAAGTTTACAAAGGAA 1122
Query 1079 CTCTGCCTTCCAAAGG--A-CAAATAGCAGTGAAAAGAGTGTCCCATGATGCAGAGGAAG 1135
||||||||| | ||| | || ||||| ||||||||| | ||||||||||||||| |||
Sbjct 1123 CTCTGCCTT-C--AGGCAAGCATATAGCTGTGAAAAGACTATCCCATGATGCAGAGCAAG 1179
Query 1136 GGATGAAGCAGTTTGTGGCTGAAATCGTGAGC-ATGGGTAATCTGAAGC-ACA-AG-AA- 1190
||||||| ||||||||||| ||| |||| | | ||||| ||| | | | ||| | ||
Sbjct 1180 GGATGAAACAGTTTGTGGCAGAAGTCGT-AACGATGGGAAAT-T-TA-CAACATCGCAAC 1235
Query 1191 TATGGTTCCACTTCTTGGGTATTGTAGAAGAAAAGGTGAGTTACTTCTGGTATCTGAATA 1250
| ||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 1236 T-TGGTTCCTCTTCTTGGGTATTGTAGAAGAAAAGGTGAGTTGCTACTGGTCTCTGAGTA 1294
Query 1251 CATGCCCAATGGTAGCCTTGACCAATACTTATTCAATGACGAAAAACCGCCAT-TTTCAT 1309
||||||||| ||||| |||||||| ||||| || | || |||| || | | ||||||
Sbjct 1295 CATGCCCAACGGTAGTCTTGACCAGTACTTGTTTTGTAACCAAAACCCATC-TCTTTCAT 1353
Query 1310 GGC-GTCGAAGACTTT-TAATCATTAAAGATATAGC-TACAGCTCTCAATTACATGCATA 1366
|| | | |||| ||| || || |||| || || || | | |||||||||||| ||||||
Sbjct 1354 GGTTG-CAAAGAATTTCTATTC-TTAAGGACATCGCCT-CGGCTCTCAATTACCTGCATA 1410
Query 1367 CAGGAGCTCC--CCAAGTTGTTCTCCACCGGGATATCAAGGCCTCTAACGTTATGTTAGA 1424
||||||| | ||| | |||| | ||||||||||| || || ||||| || ||||||||
Sbjct 1411 CAGGAGC-CAATCCA-GCTGTTTTGCACCGGGATATAAAAGCTTCTAATGTCATGTTAGA 1468
Query 1425 CACCGAATTTAATGGAAGGTTAGGGGACTTTGGTATGGC-AAGGTTTCATGATCATGGGA 1483
| || | ||||||||| ||||| || ||||||||||| ||| ||||| || | |
Sbjct 1469 TTCTGAGTATAATGGAAGATTAGGAGATTTTGGTATGGCCAAG-TTTCAGGACCCCC--A 1525
Query 1484 AA-GACCCTG-CTACAACTGCTGCTGTGGGAACCATTGGCTACATGGCACCAGAGCTTGC 1541
| || ||| || |||| ||||||||||||||||| || ||||||||||| |||||
Sbjct 1526 AGCGAACCTATCTGCAACAGCTGCTGTGGGAACCATAGGTTACATGGCACCTGAGCTAA- 1584
Query 1542 TACAG---TGGGAGCTTGC-ACTGCCACGGATGTGTATGGCTTTGGTGCCTTT--TTACT 1595
|| || ||| | ||| | | | || |||||||||| |||||||| ||| || |
Sbjct 1585 TA-AGAACTGGAA-CTT-CTAAAGAAACTGATGTGTATGCCTTTGGTGT-TTTCCTT-CA 1639
Query 1596 TGAAGTAACATGTGGGAGGAGACCTGTGGAACCTGGGTTGTCAGCTG-AAA-GATGGTAT 1653
||||||||| ||||| ||| ||||| | ||||| | |||| |||| | ||| || |||
Sbjct 1640 TGAAGTAACTTGTGGAAGGCGACCTTTTGAACCAGAGTTGCCAGC-GCAAAAGAAA-TAT 1697
Query 1654 ATAGTTAAGTGGGTCTGCGAATGTTGGAAA-ATGGCTTCTTTGCT-AGGAGCAAGAGATC 1711
| || |||||||| |||||||| |||||| ||| ||||||| || | || || ||||||
Sbjct 1698 CTGGTCAAGTGGGTTTGCGAATGCTGGAAACATG-CTTCTTTACTCAAGACCA-GAGATC 1755
Query 1712 CAAGAAT-GAGAGGTGAAATC-TCAGCTGAGGAAGTTGAAATGGTACTGAAACTAGGGTT 1769
||| ||| | || | ||| || | | | || ||||| |||||||| ||||||| |||||
Sbjct 1756 CAA-AATTGGGAAGAGAATTCGT-ATCCGAAGAAGTCGAAATGGTTTTGAAACTTGGGTT 1813
Query 1770 GCTTTGCACAAATGGTGTGCCAGA 1793
||| |||||||||| ||| |||||
Sbjct 1814 GCTCTGCACAAATGATGTTCCAGA 1837
> Ahg917642 jgi|Araly1|917642|Al_scaffold_0008_2393
Length=4092
Score = 122 bits (66), Expect = 7e-27
Identities = 261/350 (75%), Gaps = 34/350 (10%)
Strand=Plus/Plus
Query 955 GAAGAATGGGAAAAAGAATAT-G-GCCCACACCGTTTTTCTTATAAAG-ATCTGTACATT 1011
||| |||||||||| |||||| | |||| | ||| | ||| | ||| | || ||||
Sbjct 1006 GAACAATGGGAAAATGAATATAGTCCCCA-AAGGTTCTCCTT-T-AAGAACCTCTACAAA 1062
Query 1012 GCAACGAATGGGTTT-AACAAGGAT-GGACTTCTT-GGAAAGGGAGGTTTTGGAAAAGTG 1068
||||| || |||||| | || || || || ||| || | |||||||||||||||||
Sbjct 1063 GCAAC-AAGGGGTTTCAGGGAGAATCGG-CTACTTGGGGCA-GGAGGTTTTGGAAAAGTC 1119
Query 1069 TACAAA-G-GAACTCTGCCTTCCAAAGG---ACAAATAGCAGTGAAAAGAGTGTCCCATG 1123
|| ||| | ||||| | |||| | ||| |||||| || || || ||||| | ||||
Sbjct 1120 TATAAAGGAGAACT-T-CCTT-C--AGGTACACAAATTGCGGTTAAGAGAGTCTATCATG 1174
Query 1124 ATGCAGAGGAAGGGATGA-AGCAGTTTGTGGCTGAAATCG-TGAGCATGGGTAA-TCTGA 1180
||||||| |||| |||| | |||| ||| || || || | | || ||||| || || |
Sbjct 1175 ATGCAGAACAAGGAATGACA-CAGTATGTCGCAGAGATTGCT-AGTATGGG-AAGGCT-A 1230
Query 1181 A-GCACAAGAA-TATGGTTCCA-CTTCTTGGGTATTGTAGAAGAAAAGGTGAGTTACTTC 1237
| ||||||||| | ||| | || |||||||| || || ||||| |||||||| || |||
Sbjct 1231 AGGCACAAGAACT-TGG-TGCAGCTTCTTGGTTACTGCAGAAGGAAAGGTGAATTGCTTT 1288
Query 1238 TGGTATCTGAATACATGCCCAATGGTAGCCTTGACCAATACTTATTCAAT 1287
|||||| ||| |||||||| || || |||||||| | ||||| ||||||
Sbjct 1289 TGGTATATGACTACATGCCAAACGGAAGCCTTGATGACTACTTGTTCAAT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5