BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45443.1

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897334 jgi|Araly1|897334|Al_scaffold_0005_1300                    261    7e-69
  Ahg347627 jgi|Araly1|347627|fgenesh1_pg.C_scaffold_5001019           206    3e-52


> Ahg897334 jgi|Araly1|897334|Al_scaffold_0005_1300
Length=297

 Score =  261 bits (141),  Expect = 7e-69
 Identities = 240/286 (84%), Gaps = 14/286 (5%)
 Strand=Plus/Plus

Query  154  ATGATTCATCTGAGAAATGCAGGCAAATGTTGATGCACATCTCCTGTTGTTCAAGT-AAA  212
            ||||||||||||| ||||||| |||||| |||||||||||||  |||| ||||||| |||
Sbjct  1    ATGATTCATCTGAAAAATGCA-GCAAATATTGATGCACATCTTTTGTTATTCAAGTCAAA  59

Query  213  CTTTTTCTGA--TTCGCCACTACAGTATCTTGTCCGTTCAATTTCTGTCTGAT--TGATG  268
             | ||| |||  || |||||||||||||||||||||||||||| |||||||||  | |||
Sbjct  60   -TCTTTATGATTTTTGCCACTACAGTATCTTGTCCGTTCAATT-CTGTCTGATAATCATG  117

Query  269  GCCTTTTT--TCG-TTCAAAATCATTGTTTGGTGTTGATGAGAACACGGGAGCTGCAAAT  325
             |    ||  | | ||     ||||||||||| |||||||| |||||| ||||| |||||
Sbjct  118  TCAAAATTGATGGCTTTT---TCATTGTTTGGAGTTGATGACAACACGAGAGCTCCAAAT  174

Query  326  CATAGGTATCAAATGCCAAAGACGAGTACTTGGCGTGAACATGGTGGACTTGACTTTGTA  385
            |||||||||||||| ||||||| ||| |||||||||||||||| |||| ||| ||||| |
Sbjct  175  CATAGGTATCAAATTCCAAAGATGAGGACTTGGCGTGAACATGATGGAATTGCCTTTGGA  234

Query  386  TTCAGCTTGCTGGAGAAAATTTCATCGACCATTGGTGTGAAAGACA  431
            |||| |||||||||||||||||| |||||||||||||  |||||||
Sbjct  235  TTCAACTTGCTGGAGAAAATTTCGTCGACCATTGGTGCAAAAGACA  280


> Ahg347627 jgi|Araly1|347627|fgenesh1_pg.C_scaffold_5001019
Length=594

 Score =  206 bits (111),  Expect = 3e-52
 Identities = 159/181 (88%), Gaps = 8/181 (4%)
 Strand=Plus/Plus

Query  471  ATGGCTCGAGA-ATTGCATCTGATCTGGATGATTTTCTGTGTTCATCTGATTGGCTTCTC  529
            ||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct  1    ATGGCTC-AGATATTGCATCTGATCTGGATGATTTTCTGTGTTCATCTGCTTTGCATCTC  59

Query  530  AAGTCAACAGGAAACGGGGTTTATCTATAAACGTTTTGGTGAAACAGGCCATGGAG-T--  586
            | |||||||||| || ||||||||||||||| |||| ||  |||||| |||||||  |  
Sbjct  60   ATGTCAACAGGAGACAGGGTTTATCTATAAAGGTTTCGGCCAAACAGACCATGGACATGG  119

Query  587  ---TGCCAAAGGATTGTTGAAGTTGACCGATGGATCCAGAGTGAAAATGGGTCATACCTT  643
               |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  120  AGGTGCCAAAGGATTGTTGCAGTTGACCGATGGATCCAGACTGAAAATGGGTCATACCTT  179

Query  644  C  644
            |
Sbjct  180  C  180


 Score = 87.9 bits (47),  Expect = 1e-16
 Identities = 52/54 (96%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  662  TCGTTTTACCGACAATCATAATGTATTTGGCTCTTGGAGCAGTT-ATTGTCTAT  714
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  284  TCGTTTTACCGACAATCATAATGTATTTGGCTCTTGGAGCAGTTTAT-GTCTAT  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37093598241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5