BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45460.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg897340 jgi|Araly1|897340|Al_scaffold_0005_1306 1212 0.0 Ahg897344 jgi|Araly1|897344|Al_scaffold_0005_1310 612 2e-174 > Ahg897340 jgi|Araly1|897340|Al_scaffold_0005_1306 Length=1404 Score = 1212 bits (656), Expect = 0.0 Identities = 782/843 (93%), Gaps = 8/843 (1%) Strand=Plus/Plus Query 332 TGGTCATG-GGCAGATTAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTG 390 |||||||| || |||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 566 TGGTCATGAGG-AGATCCGCACCTGAGCAAGAGAACATCGCCTTGCTAATGGATGATGTA 624 Query 391 CAATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTACTGTGACTGAAAATCAAGCC 450 ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 625 CAACGCATAAGACGAGAACTGACATCTAGCATTCCTGTTACTGTGACTAAAAATCAAGCC 684 Query 451 AAGTTTGCGTTTAAGCTTGCAAAGGAATCAATAAGCATACGTACGCCTCCTACCGAGCAG 510 |||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||| || Sbjct 685 AAGTTTGCGTATAAGCTTTCAAAGGAATTAATAGGCATACGTACGCCTCCTACTGAGAAG 744 Query 511 AAGGCTTGCGGTGAGGTTAATATCGAACATGAACTGATGTTTTCTGTTGCTTTATGCCGT 570 ||| ||||||| | ||||| |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 745 AAGACTTGCGGCGGGGTTAGTATCGAACCTGAACCCATGTTTTCCGTTGCTTTATGTCGT 804 Query 571 CATCAATTCGGTGTAGAGTGGATGAAACAACATATAGAAGTGAGACTAATCGAGGGAGAT 630 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 805 CATCAATTCGGTGTGGAGTGGATGAAACAACATATAGAAGTGAGGCTAATCGAGGGAGAC 864 Query 631 GTTCCGAGATGTCCTCATGATGGCTGCAAATCAATCCTATCTCTTAAAAGCTGTTCCCAT 690 || ||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| Sbjct 865 GTACCGAGATGTCCTCATTATGGCTGCACATCAATCCTAACTCTTAAAAGCTGTGCCCAT 924 Query 691 CTTTTGACACCTAAACTAGAAGAGATGTGGGAACATAGGATCAAAGAGGAGTTC-ATCCC 749 |||||||||||||||||| |||||||||||||||| |||||||||||||| ||| || || Sbjct 925 CTTTTGACACCTAAACTAAAAGAGATGTGGGAACAAAGGATCAAAGAGGA-TTCAATTCC 983 Query 750 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGTTGGGCTTTGATGTCGAAAACCGA 809 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 984 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCTGGGCTTTGATGTCGAAAACCGA 1043 Query 810 GCTCGTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAAGCCTT 869 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1044 GCTCTTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAACCCTT 1103 Query 870 TTGCATTAACTGCAAAGTTCTGTGGCATAGTGACTTGTCATGCAAGGAATACAAGACGTT 929 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1104 TTGCATTAACTGCAAAGTTCTGTGGCATAGTAACTTGTCTTGCAAGGAATACAAGACGTT 1163 Query 930 GGGTCGAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACT 989 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 GGGTCTAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACA 1223 Query 990 GTCGCATAAAACCATCAATGT-ATATTGCAGGTGTGGTTATTCATTTTGCTACACATGTG 1048 ||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| Sbjct 1224 AACGCATAAAACCATCAATGTGAC-TTGCAGGTGTGGTTATTCGTTTTGCTACACATGTG 1282 Query 1049 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAACCAAATGGTGGCGGCTGTGTTGG 1108 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1283 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAGCCAAATGGTGGCGGATGTGTTGG 1342 Query 1109 TTCTCGtttttttctt-tatttttCATTCAATGATTATGTGGTCAATTAGTCGTCGTGTT 1167 ||| || |||| |||| | |||||| |||||||||||| || |||||||||||||||||| Sbjct 1343 TTCCCGGTTTTATCTTCT-TTTTTCTTTCAATGATTATTTGCTCAATTAGTCGTCGTGTT 1401 Query 1168 TAA 1170 ||| Sbjct 1402 TAA 1404 > Ahg897344 jgi|Araly1|897344|Al_scaffold_0005_1310 Length=867 Score = 612 bits (331), Expect = 2e-174 Identities = 647/791 (82%), Gaps = 55/791 (7%) Strand=Plus/Plus Query 334 GTCATGGGCAGAT-TAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTGCA 392 |||||||| |||| | | |||| || | ||||| |||||| ||||||| ||||||||||| Sbjct 1 GTCATGGGGAGATCT-GTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCA 59 Query 393 ATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTAC-TGTGACTGA-AAATCAAGCC 450 | |||| || | | || | |||||||||| ||| || | ||||||| | ||||||| | Sbjct 60 ACGCATCAGACAACAATTTTCATCTAGCATCCCTATT-CTTGTGACT-AGAAATCAAACT 117 Query 451 AAGTTTG-CGTTTAAGCTTGCAAAGG-----A-A---TC-AATA--AGCATACGTACGCC 497 |||||| | | ||| ||||| |||| | | || || | ||||||| || ||| Sbjct 118 GAGTTTGTC-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCC 176 Query 498 TC---CTAC-CGAGCAGAAGGCTTGCGGTGA--G-GTT-A--AT-A--TCGAACATGA-A 543 || | | | || ||||| |||| ||| | | || | || | | ||| ||| | Sbjct 177 TCGTGGTTCTC-AGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGA 235 Query 544 CTGATGTTTTCTGTTGCTTTATGCCGTCATCAATTCGGTGTAGAGTGGATGAAACAACAT 603 ||||||||| |||||||||||| ||||||| ||| |||| || || |||||||||||| Sbjct 236 -AGATGTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACAT 294 Query 604 ATAGAAGTGAGACTAATCGAGGGAGATGTTCCGAGATGTCCTCATGATGGCTGCAAATCA 663 |||||||| || |||| |||||||| ||| ||||||||||||||| ||||||||| |||| Sbjct 295 ATAGAAGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCA 354 Query 664 ATCCTATCTCTTAAAAGCTGTTCCCATCTTTTGACACCTAAACTAGAA-GAGATGTGGGA 722 | |||| | ||||||| |||| ||||||||||||||||||||||| || ||||||||||| Sbjct 355 AACCTAACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTA-AAGGAGATGTGGGA 413 Query 723 ACATAGGATCAAAGAGGAGTTC-ATCCCTGTATGTGACAGATTTCATTGCCCAAATCCAA 781 ||||||||| ||||||||| || || || ||||||||||||||||||||||||||||||| Sbjct 414 ACATAGGATAAAAGAGGAG-TCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAA 472 Query 782 GGTGTTGGGCTTTGATGTCGAAAACCGAGCTCGTTGAGTCTACTGAAGATGGAGTTAGGA 841 |||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 473 GGTGCTGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGA 532 Query 842 GATGCTGCTTTAAATGCCGCAAAGC-CTTTTGCATTAACTGCAAAGTTCTGTGGCATAGT 900 ||| ||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||| Sbjct 533 GATACTGCTTTAAATGCCGTAAA-CACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGT 591 Query 901 GACTTGTCATGCAAGGAATACAAGACGTTGGGT-CGAAATCCTA--A-AACAATATCGCG 956 ||||||| |||||||||||||||| ||| ||| | ||| |||| | |||| | | ||| Sbjct 592 AACTTGTCTTGCAAGGAATACAAGA-GTTCGGTTCAAAAGCCTACTACAACAGTGTGGCG 650 Query 957 TCAATGTAAAAAGT-GCCAACACATGATCAAACTGTCGCATAAAAC-CATCAATGT-ATA 1013 |||||||| || || ||||||||||||| ||||| ||| |||| ||||||||| | Sbjct 651 TCAATGTAGAA-GTTGCCAACACATGATAAAACTATCGGG-AAAATGCATCAATGTCAC- 707 Query 1014 TTGCAGGTGTGGTTATTCATTTTGCTACACATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1073 |||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||| Sbjct 708 TTGCAGGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG 767 Query 1074 C-CGTCATCAT 1083 | | ||||||| Sbjct 768 CTC-TCATCAT 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5