BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45460.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897340 jgi|Araly1|897340|Al_scaffold_0005_1306 1212 0.0
Ahg897344 jgi|Araly1|897344|Al_scaffold_0005_1310 612 2e-174
> Ahg897340 jgi|Araly1|897340|Al_scaffold_0005_1306
Length=1404
Score = 1212 bits (656), Expect = 0.0
Identities = 782/843 (93%), Gaps = 8/843 (1%)
Strand=Plus/Plus
Query 332 TGGTCATG-GGCAGATTAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTG 390
|||||||| || |||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 566 TGGTCATGAGG-AGATCCGCACCTGAGCAAGAGAACATCGCCTTGCTAATGGATGATGTA 624
Query 391 CAATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTACTGTGACTGAAAATCAAGCC 450
||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 625 CAACGCATAAGACGAGAACTGACATCTAGCATTCCTGTTACTGTGACTAAAAATCAAGCC 684
Query 451 AAGTTTGCGTTTAAGCTTGCAAAGGAATCAATAAGCATACGTACGCCTCCTACCGAGCAG 510
|||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 685 AAGTTTGCGTATAAGCTTTCAAAGGAATTAATAGGCATACGTACGCCTCCTACTGAGAAG 744
Query 511 AAGGCTTGCGGTGAGGTTAATATCGAACATGAACTGATGTTTTCTGTTGCTTTATGCCGT 570
||| ||||||| | ||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct 745 AAGACTTGCGGCGGGGTTAGTATCGAACCTGAACCCATGTTTTCCGTTGCTTTATGTCGT 804
Query 571 CATCAATTCGGTGTAGAGTGGATGAAACAACATATAGAAGTGAGACTAATCGAGGGAGAT 630
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 805 CATCAATTCGGTGTGGAGTGGATGAAACAACATATAGAAGTGAGGCTAATCGAGGGAGAC 864
Query 631 GTTCCGAGATGTCCTCATGATGGCTGCAAATCAATCCTATCTCTTAAAAGCTGTTCCCAT 690
|| ||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||
Sbjct 865 GTACCGAGATGTCCTCATTATGGCTGCACATCAATCCTAACTCTTAAAAGCTGTGCCCAT 924
Query 691 CTTTTGACACCTAAACTAGAAGAGATGTGGGAACATAGGATCAAAGAGGAGTTC-ATCCC 749
|||||||||||||||||| |||||||||||||||| |||||||||||||| ||| || ||
Sbjct 925 CTTTTGACACCTAAACTAAAAGAGATGTGGGAACAAAGGATCAAAGAGGA-TTCAATTCC 983
Query 750 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGTTGGGCTTTGATGTCGAAAACCGA 809
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 984 TGTATGTGACAGATTTCATTGCCCAAATCCAAGGTGCTGGGCTTTGATGTCGAAAACCGA 1043
Query 810 GCTCGTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAAGCCTT 869
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1044 GCTCTTTGAGTCTACTGAAGATGGAGTTAGGAGATGCTGCTTTAAATGCCGCAAACCCTT 1103
Query 870 TTGCATTAACTGCAAAGTTCTGTGGCATAGTGACTTGTCATGCAAGGAATACAAGACGTT 929
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1104 TTGCATTAACTGCAAAGTTCTGTGGCATAGTAACTTGTCTTGCAAGGAATACAAGACGTT 1163
Query 930 GGGTCGAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACT 989
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GGGTCTAAATCCTAAAACAATATCGCGTCAATGTAAAAAGTGCCAACACATGATCAAACA 1223
Query 990 GTCGCATAAAACCATCAATGT-ATATTGCAGGTGTGGTTATTCATTTTGCTACACATGTG 1048
||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 1224 AACGCATAAAACCATCAATGTGAC-TTGCAGGTGTGGTTATTCGTTTTGCTACACATGTG 1282
Query 1049 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAACCAAATGGTGGCGGCTGTGTTGG 1108
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1283 GAGCTCAATGGAAGCTTGGAGGTTGCCGTCATCATAGCCAAATGGTGGCGGATGTGTTGG 1342
Query 1109 TTCTCGtttttttctt-tatttttCATTCAATGATTATGTGGTCAATTAGTCGTCGTGTT 1167
||| || |||| |||| | |||||| |||||||||||| || ||||||||||||||||||
Sbjct 1343 TTCCCGGTTTTATCTTCT-TTTTTCTTTCAATGATTATTTGCTCAATTAGTCGTCGTGTT 1401
Query 1168 TAA 1170
|||
Sbjct 1402 TAA 1404
> Ahg897344 jgi|Araly1|897344|Al_scaffold_0005_1310
Length=867
Score = 612 bits (331), Expect = 2e-174
Identities = 647/791 (82%), Gaps = 55/791 (7%)
Strand=Plus/Plus
Query 334 GTCATGGGCAGAT-TAGCGCCTGAGAAAGAGAACATCGCCTTGCTAATGGATGATGTGCA 392
|||||||| |||| | | |||| || | ||||| |||||| ||||||| |||||||||||
Sbjct 1 GTCATGGGGAGATCT-GTGCCTAAGCATGAGAAAATCGCCATGCTAATAGATGATGTGCA 59
Query 393 ATGCATAAGGCGAGAACTGACATCTAGCATTCCTGTTAC-TGTGACTGA-AAATCAAGCC 450
| |||| || | | || | |||||||||| ||| || | ||||||| | ||||||| |
Sbjct 60 ACGCATCAGACAACAATTTTCATCTAGCATCCCTATT-CTTGTGACT-AGAAATCAAACT 117
Query 451 AAGTTTG-CGTTTAAGCTTGCAAAGG-----A-A---TC-AATA--AGCATACGTACGCC 497
|||||| | | ||| ||||| |||| | | || || | ||||||| || |||
Sbjct 118 GAGTTTGTC-TATAAACTTGCCAAGGAAACAATAGTTTCTAACACCAGCATACCTATGCC 176
Query 498 TC---CTAC-CGAGCAGAAGGCTTGCGGTGA--G-GTT-A--AT-A--TCGAACATGA-A 543
|| | | | || ||||| |||| ||| | | || | || | | ||| ||| |
Sbjct 177 TCGTGGTTCTC-AGAAGAAGACTTGTGGTAACTGCTTTCACGATGATGTGGAAGGTGAGA 235
Query 544 CTGATGTTTTCTGTTGCTTTATGCCGTCATCAATTCGGTGTAGAGTGGATGAAACAACAT 603
||||||||| |||||||||||| ||||||| ||| |||| || || ||||||||||||
Sbjct 236 -AGATGTTTTCCGTTGCTTTATGCAGTCATCACTTCTGTGTGGACTGCATGAAACAACAT 294
Query 604 ATAGAAGTGAGACTAATCGAGGGAGATGTTCCGAGATGTCCTCATGATGGCTGCAAATCA 663
|||||||| || |||| |||||||| ||| ||||||||||||||| ||||||||| ||||
Sbjct 295 ATAGAAGTTAGTCTAAACGAGGGAGTTGTACCGAGATGTCCTCATTATGGCTGCACATCA 354
Query 664 ATCCTATCTCTTAAAAGCTGTTCCCATCTTTTGACACCTAAACTAGAA-GAGATGTGGGA 722
| |||| | ||||||| |||| ||||||||||||||||||||||| || |||||||||||
Sbjct 355 AACCTAACACTTAAAATCTGTGCCCATCTTTTGACACCTAAACTA-AAGGAGATGTGGGA 413
Query 723 ACATAGGATCAAAGAGGAGTTC-ATCCCTGTATGTGACAGATTTCATTGCCCAAATCCAA 781
||||||||| ||||||||| || || || |||||||||||||||||||||||||||||||
Sbjct 414 ACATAGGATAAAAGAGGAG-TCAATTCCGGTATGTGACAGATTTCATTGCCCAAATCCAA 472
Query 782 GGTGTTGGGCTTTGATGTCGAAAACCGAGCTCGTTGAGTCTACTGAAGATGGAGTTAGGA 841
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 473 GGTGCTGGGCATTGATGTCGAAAACCGAGCTTGTTGAATCTACTGAAGATGGAGTTAGGA 532
Query 842 GATGCTGCTTTAAATGCCGCAAAGC-CTTTTGCATTAACTGCAAAGTTCTGTGGCATAGT 900
||| ||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||
Sbjct 533 GATACTGCTTTAAATGCCGTAAA-CACTTTTGCATTACCTGCAAAGTTCTGTGGCATAGT 591
Query 901 GACTTGTCATGCAAGGAATACAAGACGTTGGGT-CGAAATCCTA--A-AACAATATCGCG 956
||||||| |||||||||||||||| ||| ||| | ||| |||| | |||| | | |||
Sbjct 592 AACTTGTCTTGCAAGGAATACAAGA-GTTCGGTTCAAAAGCCTACTACAACAGTGTGGCG 650
Query 957 TCAATGTAAAAAGT-GCCAACACATGATCAAACTGTCGCATAAAAC-CATCAATGT-ATA 1013
|||||||| || || ||||||||||||| ||||| ||| |||| ||||||||| |
Sbjct 651 TCAATGTAGAA-GTTGCCAACACATGATAAAACTATCGGG-AAAATGCATCAATGTCAC- 707
Query 1014 TTGCAGGTGTGGTTATTCATTTTGCTACACATGTGGAGCTCAATGGAAGCTTGGAGGTTG 1073
|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 708 TTGCAGGTGTGGCTATAGGTTTTGCTATGCATGTGGAGCCCAATGGAAGCTTGGAGGTTG 767
Query 1074 C-CGTCATCAT 1083
| | |||||||
Sbjct 768 CTC-TCATCAT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5