BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G45500.1

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484937 jgi|Araly1|484937|fgenesh2_kg.5__929__AT3G45500.1          575    1e-163
  Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091                    115    3e-25 
  Ahg936973 jgi|Araly1|936973|scaffold_501164.1                       89.8    2e-17 
  Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1         86.1    3e-16 


> Ahg484937 jgi|Araly1|484937|fgenesh2_kg.5__929__AT3G45500.1
Length=440

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 397/440 (90%), Gaps = 0/440 (0%)
 Strand=Plus/Plus

Query  1    ATGCTCAAGGGATTTACTCGCTCGAGCATTAGTCCTCAGTTGTGCAGCCTTTACTTCAAA  60
            ||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct  1    ATGCTGAAGGGATTTACCCGCTCGAGCACTAGTCCTCAGTTGTGTAGCCTTTACTTCAAA  60

Query  61   GGTTTGGTTGGCGATGACTCATTGGCTGGATTTGGGGTTGCAATTTGCGGGCATAGAGAT  120
            ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   GGTTTGGTTGGCGTTGACTCATTGGCGGGATTTGGGGTTGCAATTTGCGGGCATAGAGAT  120

Query  121  GATATCTTATTTCAGCTGAATGCACCAATTCATGGCTCGGATATTACTGTTTTGGAGGCT  180
            ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  GATCTCTTGTTTCAGCTGAATGGACCAATTCATGGCTCGGATATTACTGTTTTGGAGGCT  180

Query  181  GAACTTATGGCATTAAAGCGAGGACTAATAGAAGCTGCGGGATTTAAGTCTAGCTTTACG  240
            |||||||| ||||| |||| ||||||||  |||||||||||||||||||| ||| |  ||
Sbjct  181  GAACTTATAGCATTGAAGCAAGGACTAACGGAAGCTGCGGGATTTAAGTCGAGCGTCCCG  240

Query  241  ATTTTTGTGGAGGGAAGTAGTATCAGATATGTTTCTGAACTAGCAAGGGCGACAATAGTT  300
            |||||| | |  ||||  ||||| ||||||| || ||||||||||||||||||| |||||
Sbjct  241  ATTTTTATAGCCGGAAACAGTATTAGATATGCTTATGAACTAGCAAGGGCGACACTAGTT  300

Query  301  TCTGAGTTAAGCATATCTGTGGATCCTCCTAGCAGCTCTCTAAATGGAATAGAGAAGCTG  360
            ||| || |||| |||| || |||||||||| |||| |||||||||||| |||||||||||
Sbjct  301  TCTAAGATAAGAATATATGGGGATCCTCCTTGCAGATCTCTAAATGGACTAGAGAAGCTG  360

Query  361  AAGTTAGAAGATGTTATTGTATGGAATGTGGTGAACCCTTATGCATCAACTGCAAAATTT  420
            ||||||| ||||||| ||| ||  ||||||||||||||||||||||||||||||| ||||
Sbjct  361  AAGTTAGGAGATGTTGTTGCATCAAATGTGGTGAACCCTTATGCATCAACTGCAAGATTT  420

Query  421  GGCAAATCAGAAAATGTGGC  440
            | ||||||||||||||||||
Sbjct  421  GACAAATCAGAAAATGTGGC  440


> Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091
Length=798

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 77/84 (92%), Gaps = 2/84 (2%)
 Strand=Plus/Plus

Query  422  GCAAATCAGAAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTTTCAGAA  481
            |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||
Sbjct  652  GCAAATCAGAAAATGTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTTTC-GAA  710

Query  482  -GGATGCATCAAAGTAACTTGCAG  504
             ||||||||| | |||||||||||
Sbjct  711  AGGATGCATCCATGTAACTTGCAG  734


> Ahg936973 jgi|Araly1|936973|scaffold_501164.1
Length=506

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 77/90 (86%), Gaps = 6/90 (7%)
 Strand=Plus/Plus

Query  418  TTTGGCAAATCAG-AAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTT-  475
            ||||||||||||| |||| ||||||||||||||||||||||||||||||||  | || | 
Sbjct  204  TTTGGCAAATCAGCAAAA-GTGGCGTCAATGTGGAAAGTGCCAACACATGATTGCACGTA  262

Query  476  TCAGAAGGATGCATCAAAGTAA-CTTGCAG  504
            || |||||||||| |  ||||| || ||||
Sbjct  263  TC-GAAGGATGCAACGTAGTAATCT-GCAG  290


> Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1
Length=946

 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 73/86 (85%), Gaps = 2/86 (2%)
 Strand=Plus/Plus

Query  420  TGGCAAATCAGAAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTTTCAG  479
            ||||||||||||||||||||||||||||   |||||| ||||||||||  ||||||||  
Sbjct  770  TGGCAAATCAGAAAATGTGGCGTCAATGCAAAAAGTGTCAACACATGATTGAACTTTCTC  829

Query  480  AAGGATGCAT-CAAAGTAACTTGCAG  504
            |||||||| | ||| ||||  |||||
Sbjct  830  AAGGATGCGTACAA-GTAAAGTGCAG  854



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22149414777


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5