BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45540.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1 1338 0.0
Ahg937226 jgi|Araly1|937226|scaffold_501417.1 420 1e-116
Ahg937218 jgi|Araly1|937218|scaffold_501409.1 285 4e-76
Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 276 3e-73
Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435 52.8 5e-06
> Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1
Length=946
Score = 1338 bits (724), Expect = 0.0
Identities = 875/948 (92%), Gaps = 10/948 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGGACCAATTCATCATGACTCCAACATTACACCTTTGGAGGCTGAGCTTACCGCA 60
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGGACCAATTCATCATGATTCCACCATTACACCTTTGGAGGCTGAGCTTACCGCA 60
Query 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCGTACCAGAGGAGAATAAAACT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCATACCAGAGGAGAATAAAACT 120
Query 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATT 180
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTTAAGTCGAGCTTTCCGATT 180
Query 181 TTCGTGGAGGGAAAAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCT 240
|||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TTCGTGGAGGGAAATAGTGTAAGTTATGCTTATAAACTAGCAAGGGAAACAAAAGTTTCT 240
Query 241 GAAAT--CA----GCATATCTGTGAATCCTCCTCG-CCAACCTAAGGCTACTCGCAAAAC 293
||||| || ||||| ||||||||||||||| ||| | || ||||||||||||||
Sbjct 241 GAAATTTCAATCAGCATACCTGTGAATCCTCCTCATCCAGC-TAGGGCTACTCGCAAAAA 299
Query 294 AACTTGCAAAATCTGTTTAGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTAA 353
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 300 AACTTGCAAAATCTGTTTAGGCGATGATATTAATGAGAATCAAATGTTTTGTGTTGATAA 359
Query 354 GTGTCGTCATCGATTTTGTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGA 413
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 360 ATGTCGTCATCGATTTTGTTCCGAGTGTATGAAACGACATATAGAGGTGAGGTTACTCGA 419
Query 414 GGGAAGTGTAATGAGATGTCCTCATTACCGCTGCAAGACTACGCTAAAATTTGGAGGCTG 473
||||||||||||||||||||||||||| ||||||||| ||| ||| | |||| | | ||
Sbjct 420 GGGAAGTGTAATGAGATGTCCTCATTATCGCTGCAAGTCTAAGCTGACTTTTGAAAGATG 479
Query 474 T-ATAAATCTTTTGACACCTAAAATAAGAGAGATGTGGCAACAAAGGATTAAAGAAGACT 532
| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 480 TGA-AAATCTTTTGACACCTAAAGTAAGAGAGATGTGGCAACAAAGGATCAAAGAGGACT 538
Query 533 TAATCCCTGTAACAGGGAGAATTTACTGCCCAAACTCGCGATGCTCGGCTTTAATGTCAG 592
|||| ||||||||| ||||||||||||||||||| || | ||| ||||||||||||| |
Sbjct 539 TAATTCCTGTAACAAAGAGAATTTACTGCCCAAACCCGAGGTGCCCGGCTTTAATGTCGG 598
Query 593 AAACCGAGCTCTCTATATCAACTAAAGAAGATGAAGTTAGGAGATGTTGCTTCAAATGCG 652
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AAACCGACCTCTCTATATCACCTAAAGAAGATGAAGTTAGGAGATGCTGCTTCAAATGCG 658
Query 653 GTCAAATCTTTTGCATCAAGTGTAAAGTTTCATGGCATAGTAACTTGTCGTGCAACGATT 712
||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 659 GTCAAATCTTTTGCATCAAATGCAAAGTTTCATGGCATAGTAACTTGTCGTGCGACGAAT 718
Query 713 ACAAGAAGTTGAATCCATACCCTACAGAAAATGATGGAAAGATTAAAGCTCTGGCAAATC 772
|||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 719 ACAAGAGGTTGCATCCATATCCTACAGAGAATGATGGAAAGATTAAAGCTCTGGCAAATC 778
Query 773 AGAAAAGGTGGCGTCAATGCGGAAAGTGTCAACACATGATTGAACTTTCTAAAGGATGCG 832
|||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 779 AGAAAATGTGGCGTCAATGCAAAAAGTGTCAACACATGATTGAACTTTCTCAAGGATGCG 838
Query 833 TACAAGTAAAGTGCAGATGTGGACATAAATTTTGCTACCGATGTGGAGTCCAGGCTGGAG 892
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 839 TACAAGTAAAGTGCAGATGTGGACATAAGTTTTGCTACCGATGTGGAGTCCAGGCTGGAC 898
Query 893 GTTGCAAACATGGTCATGGTCTTCCTCCAAGGCCTCCACCGCCGCCAC 940
||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 899 GTTGCCAACATGGTCATGGTCTTCCTCCTAGGCCTCCACGGCCGCCAC 946
> Ahg937226 jgi|Araly1|937226|scaffold_501417.1
Length=1030
Score = 420 bits (227), Expect = 1e-116
Identities = 415/504 (82%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 144 ACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGA-TTTTCGTGGAGGGAAA-AAGAATT 201
||||||| || || |||| ||| | |||||||| |||| | || ||||| | | ||
Sbjct 26 ACGTATACGAAAACGATTGGCGTCGATCTTTCCGACTTTT-GGGGTCGGAAATATG-ATC 83
Query 202 AGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCATATC-TGTGAA 260
|| |||||||||||||||||||||||| ||||||||||||| || |||| | ||||||
Sbjct 84 AGATATGCTTATAAACTAGCAAGGGAAGCAATAGTTTCTGATATTAGCA-GGCTTGTGAA 142
Query 261 TCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTTAGATGATG 319
|| |||||||||| || |||||||| | |||| ||||||| ||||||||||||||||
Sbjct 143 TCGTCCTCGCCAAGCC-AAGGCTACCCTCAAAGGGACTTGCAGTATCTGTTTAGATGATG 201
Query 320 ATATTAATGAGAATCAGATGTTTTGTGTTGGTAAGTGTCGTCATCGATTTTGTTCCGACT 379
||||||||| ||||||||||||| || ||| |||||||||| ||| |||| ||| |
Sbjct 202 ATATTAATGCTAATCAGATGTTTTCCATTAATAAATGTCGTCATCAATTCTGTTACGAGT 261
Query 380 GTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATT 439
|||||| |||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 262 GTATGAAACGACATATAGAGGTGAGGCTACTCGAGGGGAGTGTGATTAGTTGTCCTCATT 321
Query 440 ACCGCTGCAAGACTACGCTAAAATTTGGAGGCTGTATAAATCTTTTGACACCTAAAATAA 499
|| |||||||| ||| ||| | |||||| |||| | ||||||||| |||||||| |||
Sbjct 322 ACAGCTGCAAGTCTAAGCTGAGTTTTGGAAACTGTGTCAATCTTTTGTCACCTAAACTAA 381
Query 500 GAGAGATGTGGCAACAAAGGATTAAAGAAGACT-TAATCCCTGT-AA-CAGGGAGAATTT 556
|| ||||||||||||||||||| ||||| |||| || ||| ||| || ||| |||||||
Sbjct 382 GAAAGATGTGGCAACAAAGGATCAAAGAGGACTCTATTCC-TGTTAAACAG--AGAATTT 438
Query 557 ACTGCCCAAACTCG--CGATGCTCGGCTTTAATGTCAG-AAACCGAGCTCTCTATATCAA 613
| || |||||| || || ||||| ||| ||||||| | |||| |||||||||| ||| |
Sbjct 439 ATTGTCCAAAC-CGGACG-TGCTCCGCTCTAATGTCGGTAAAC-GAGCTCTCTAAATCTA 495
Query 614 CTAAAGAAGATGAAGTTAGGAGAT 637
||||||||| || |||||||||||
Sbjct 496 CTAAAGAAGCTGGAGTTAGGAGAT 519
> Ahg937218 jgi|Araly1|937218|scaffold_501409.1
Length=633
Score = 285 bits (154), Expect = 4e-76
Identities = 271/328 (83%), Gaps = 6/328 (2%)
Strand=Plus/Plus
Query 134 TTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATTTTCGTGGAGGGAA 193
||||| ||||||||||||| || ||| ||| ||||||| | |||| |||| ||||
Sbjct 18 TTGATATGCAACGTATAAGTCAACAATTTGCGTCGAGCTTTCGGGTTTTTGTGGCTGGAA 77
Query 194 AAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCATAT 253
| || || || |||||||||| || ||||| |||| |||| | |||||||||| ||||
Sbjct 78 ATAGTATCAGATATGCTTATATACGAGCAAAGGAAGCAATTGCTTCTGAAATCCGCAT-G 136
Query 254 C-TGTGAATCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTT 311
| |||||| ||||||| |||| || | |||||||||||| |||||||||| || |||||
Sbjct 137 CATGTGAAGCCTCCTCACCAAGCC-ATGGCTACTCGCAAGACAACTTGCAGTATTTGTTT 195
Query 312 AGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTA-AGTGTCGTCATCGATTTT 370
|||||||||| || | | ||||||||||||||||||| || | |||||||||| ||| |
Sbjct 196 AGATGATGATGTTGACGCTAATCAGATGTTTTGTGTTGATATA-TGTCGTCATCAATTCT 254
Query 371 GTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGAT 430
||| || ||||||| ||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 255 GTTTTGAGTGTATGAAACGACATGTAGAGGTGAGGCTACTCGAGGGAAGTGTGATTAGAT 314
Query 431 GTCCTCATTACCGCTGCAAGACTACGCT 458
|||| ||||||||||||||| ||| |||
Sbjct 315 GTCCGCATTACCGCTGCAAGTCTAAGCT 342
> Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321
Length=819
Score = 276 bits (149), Expect = 3e-73
Identities = 407/530 (77%), Gaps = 24/530 (5%)
Strand=Plus/Plus
Query 334 CAGATGTTTTGTGTTGGTA-AGTGTCG-TCATCGATTT-TGT-TCCGACTGTATGAGACG 389
|||||||||| | ||| | | || || |||| || || ||| | || || |||| |||
Sbjct 286 CAGATGTTTTCTATTGATTTA-TG-CGGTCAT-GAATTCTGTGTG-GAGTGCATGAAACG 341
Query 390 ACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATTACCGCTGCAA 449
||||||||| ||||||||||||| |||| ||||| ||||||||||||||| | ||||
Sbjct 342 ACATATAGAAGTGAGGCTACTCGCGGGAGGTGTACCGAGATGTCCTCATTATCAATGCAG 401
Query 450 GACTACGCTAAAAT-TTGGAGGCTGTATAAATCTTTTGACACCTAAAATAAGAG-AGATG 507
| ||| || | | ||||| ||||| | |||||||||||| ||||| ||| || | |||
Sbjct 402 GTCTAAACTTAC-TCTTGGAAGCTGTGTCAATCTTTTGACATCTAAACTAAAAGCA-ATG 459
Query 508 TGGCAACAAAGGATTAAAGAAGACTTAATCCCTGTAACAGGG-AGAATTTACTGCCCAAA 566
||| ||| || || | || || | || | ||| | || ||| |||| || |||||
Sbjct 460 TGGGAACGAATAATCGACGAGGAATCGATTCATGTGGC-GGACAGAGTTTATTGTCCAAA 518
Query 567 CTCGCGATGCTCGGCTTTAATGTCAGAAACCGAGCTCTCTA--T-A---TCAACTAAAGA 620
| || | ||||| || |||||||| | |||| ||||||| | | | || ||||||||
Sbjct 519 CCCGAGGTGCTCAGCCTTAATGTCGGTAACCAAGCTCTCAAACTCAAACTCTACTAAAGA 578
Query 621 AGATG-AAGTTAGGAGATGTTGCTTCAAATGCGGTCAAATCTTTTGCATCAAGTGTAAAG 679
||||| || | | |||| | || ||||||||| || || |||||| |||| || ||||
Sbjct 579 AGATGTAACT-ATGAGAAGCTGTTTCAAATGCAGTGAACCCTTTTGTATCACCTGCAAAG 637
Query 680 TTTCATGGCATAGTAACTTGTCGTGCAACGATTACAAGA-AGTTGAATCCATACCCTACA 738
|| | |||||||| ||||||||||||||||||||||||| | ||| |||| | ||||||
Sbjct 638 TTCCGTGGCATAGCAACTTGTCGTGCAACGATTACAAGAGA-TTGGGTCCAAATCCTACA 696
Query 739 GAAAATGATGGAAAGATTAAAGCTCTGGCAAATCAGAAAAGGTGGCGTCAATGCGGAAAG 798
| | ||||| |||||| |||||||| ||| || |||||| |||||||||||| | |||
Sbjct 697 GCAGATGATATAAAGATGAAAGCTCTAGCATATAAGAAAATGTGGCGTCAATGTGAAAAT 756
Query 799 TGTCAACACATGATTGAACTTTCTAAAGGATGCGTACAAGTAAAGTGCAG 848
||||||||||| || |||||||| |||||||| | || |||| |||||
Sbjct 757 TGTCAACACATAATCGAACTTTCGGAAGGATGCATCCATGTAACTTGCAG 806
> Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435
Length=411
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 225 GGAAACAATAGTTTCTGAAATCAGCATA 252
||||||||||||||||||||||||||||
Sbjct 3 GGAAACAATAGTTTCTGAAATCAGCATA 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5