BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45540.1 Length=1047 Score E Sequences producing significant alignments: (Bits) Value Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1 1338 0.0 Ahg937226 jgi|Araly1|937226|scaffold_501417.1 420 1e-116 Ahg937218 jgi|Araly1|937218|scaffold_501409.1 285 4e-76 Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 276 3e-73 Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435 52.8 5e-06 > Ahg484938 jgi|Araly1|484938|fgenesh2_kg.5__930__AT3G45540.1 Length=946 Score = 1338 bits (724), Expect = 0.0 Identities = 875/948 (92%), Gaps = 10/948 (1%) Strand=Plus/Plus Query 1 ATGAAAGGACCAATTCATCATGACTCCAACATTACACCTTTGGAGGCTGAGCTTACCGCA 60 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAGGACCAATTCATCATGATTCCACCATTACACCTTTGGAGGCTGAGCTTACCGCA 60 Query 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCGTACCAGAGGAGAATAAAACT 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCATACCAGAGGAGAATAAAACT 120 Query 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATT 180 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTTAAGTCGAGCTTTCCGATT 180 Query 181 TTCGTGGAGGGAAAAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCT 240 |||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||| Sbjct 181 TTCGTGGAGGGAAATAGTGTAAGTTATGCTTATAAACTAGCAAGGGAAACAAAAGTTTCT 240 Query 241 GAAAT--CA----GCATATCTGTGAATCCTCCTCG-CCAACCTAAGGCTACTCGCAAAAC 293 ||||| || ||||| ||||||||||||||| ||| | || |||||||||||||| Sbjct 241 GAAATTTCAATCAGCATACCTGTGAATCCTCCTCATCCAGC-TAGGGCTACTCGCAAAAA 299 Query 294 AACTTGCAAAATCTGTTTAGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTAA 353 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| Sbjct 300 AACTTGCAAAATCTGTTTAGGCGATGATATTAATGAGAATCAAATGTTTTGTGTTGATAA 359 Query 354 GTGTCGTCATCGATTTTGTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGA 413 ||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| Sbjct 360 ATGTCGTCATCGATTTTGTTCCGAGTGTATGAAACGACATATAGAGGTGAGGTTACTCGA 419 Query 414 GGGAAGTGTAATGAGATGTCCTCATTACCGCTGCAAGACTACGCTAAAATTTGGAGGCTG 473 ||||||||||||||||||||||||||| ||||||||| ||| ||| | |||| | | || Sbjct 420 GGGAAGTGTAATGAGATGTCCTCATTATCGCTGCAAGTCTAAGCTGACTTTTGAAAGATG 479 Query 474 T-ATAAATCTTTTGACACCTAAAATAAGAGAGATGTGGCAACAAAGGATTAAAGAAGACT 532 | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| Sbjct 480 TGA-AAATCTTTTGACACCTAAAGTAAGAGAGATGTGGCAACAAAGGATCAAAGAGGACT 538 Query 533 TAATCCCTGTAACAGGGAGAATTTACTGCCCAAACTCGCGATGCTCGGCTTTAATGTCAG 592 |||| ||||||||| ||||||||||||||||||| || | ||| ||||||||||||| | Sbjct 539 TAATTCCTGTAACAAAGAGAATTTACTGCCCAAACCCGAGGTGCCCGGCTTTAATGTCGG 598 Query 593 AAACCGAGCTCTCTATATCAACTAAAGAAGATGAAGTTAGGAGATGTTGCTTCAAATGCG 652 ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 599 AAACCGACCTCTCTATATCACCTAAAGAAGATGAAGTTAGGAGATGCTGCTTCAAATGCG 658 Query 653 GTCAAATCTTTTGCATCAAGTGTAAAGTTTCATGGCATAGTAACTTGTCGTGCAACGATT 712 ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| | Sbjct 659 GTCAAATCTTTTGCATCAAATGCAAAGTTTCATGGCATAGTAACTTGTCGTGCGACGAAT 718 Query 713 ACAAGAAGTTGAATCCATACCCTACAGAAAATGATGGAAAGATTAAAGCTCTGGCAAATC 772 |||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 719 ACAAGAGGTTGCATCCATATCCTACAGAGAATGATGGAAAGATTAAAGCTCTGGCAAATC 778 Query 773 AGAAAAGGTGGCGTCAATGCGGAAAGTGTCAACACATGATTGAACTTTCTAAAGGATGCG 832 |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 779 AGAAAATGTGGCGTCAATGCAAAAAGTGTCAACACATGATTGAACTTTCTCAAGGATGCG 838 Query 833 TACAAGTAAAGTGCAGATGTGGACATAAATTTTGCTACCGATGTGGAGTCCAGGCTGGAG 892 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 839 TACAAGTAAAGTGCAGATGTGGACATAAGTTTTGCTACCGATGTGGAGTCCAGGCTGGAC 898 Query 893 GTTGCAAACATGGTCATGGTCTTCCTCCAAGGCCTCCACCGCCGCCAC 940 ||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 899 GTTGCCAACATGGTCATGGTCTTCCTCCTAGGCCTCCACGGCCGCCAC 946 > Ahg937226 jgi|Araly1|937226|scaffold_501417.1 Length=1030 Score = 420 bits (227), Expect = 1e-116 Identities = 415/504 (82%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 144 ACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGA-TTTTCGTGGAGGGAAA-AAGAATT 201 ||||||| || || |||| ||| | |||||||| |||| | || ||||| | | || Sbjct 26 ACGTATACGAAAACGATTGGCGTCGATCTTTCCGACTTTT-GGGGTCGGAAATATG-ATC 83 Query 202 AGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCATATC-TGTGAA 260 || |||||||||||||||||||||||| ||||||||||||| || |||| | |||||| Sbjct 84 AGATATGCTTATAAACTAGCAAGGGAAGCAATAGTTTCTGATATTAGCA-GGCTTGTGAA 142 Query 261 TCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTTAGATGATG 319 || |||||||||| || |||||||| | |||| ||||||| |||||||||||||||| Sbjct 143 TCGTCCTCGCCAAGCC-AAGGCTACCCTCAAAGGGACTTGCAGTATCTGTTTAGATGATG 201 Query 320 ATATTAATGAGAATCAGATGTTTTGTGTTGGTAAGTGTCGTCATCGATTTTGTTCCGACT 379 ||||||||| ||||||||||||| || ||| |||||||||| ||| |||| ||| | Sbjct 202 ATATTAATGCTAATCAGATGTTTTCCATTAATAAATGTCGTCATCAATTCTGTTACGAGT 261 Query 380 GTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATT 439 |||||| |||||||||||||||||||||||||||||| ||||| || || |||||||||| Sbjct 262 GTATGAAACGACATATAGAGGTGAGGCTACTCGAGGGGAGTGTGATTAGTTGTCCTCATT 321 Query 440 ACCGCTGCAAGACTACGCTAAAATTTGGAGGCTGTATAAATCTTTTGACACCTAAAATAA 499 || |||||||| ||| ||| | |||||| |||| | ||||||||| |||||||| ||| Sbjct 322 ACAGCTGCAAGTCTAAGCTGAGTTTTGGAAACTGTGTCAATCTTTTGTCACCTAAACTAA 381 Query 500 GAGAGATGTGGCAACAAAGGATTAAAGAAGACT-TAATCCCTGT-AA-CAGGGAGAATTT 556 || ||||||||||||||||||| ||||| |||| || ||| ||| || ||| ||||||| Sbjct 382 GAAAGATGTGGCAACAAAGGATCAAAGAGGACTCTATTCC-TGTTAAACAG--AGAATTT 438 Query 557 ACTGCCCAAACTCG--CGATGCTCGGCTTTAATGTCAG-AAACCGAGCTCTCTATATCAA 613 | || |||||| || || ||||| ||| ||||||| | |||| |||||||||| ||| | Sbjct 439 ATTGTCCAAAC-CGGACG-TGCTCCGCTCTAATGTCGGTAAAC-GAGCTCTCTAAATCTA 495 Query 614 CTAAAGAAGATGAAGTTAGGAGAT 637 ||||||||| || ||||||||||| Sbjct 496 CTAAAGAAGCTGGAGTTAGGAGAT 519 > Ahg937218 jgi|Araly1|937218|scaffold_501409.1 Length=633 Score = 285 bits (154), Expect = 4e-76 Identities = 271/328 (83%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 134 TTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATTTTCGTGGAGGGAA 193 ||||| ||||||||||||| || ||| ||| ||||||| | |||| |||| |||| Sbjct 18 TTGATATGCAACGTATAAGTCAACAATTTGCGTCGAGCTTTCGGGTTTTTGTGGCTGGAA 77 Query 194 AAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCTGAAATCAGCATAT 253 | || || || |||||||||| || ||||| |||| |||| | |||||||||| |||| Sbjct 78 ATAGTATCAGATATGCTTATATACGAGCAAAGGAAGCAATTGCTTCTGAAATCCGCAT-G 136 Query 254 C-TGTGAATCCTCCTCGCCAA-CCTAAGGCTACTCGCAAAACAACTTGCAAAATCTGTTT 311 | |||||| ||||||| |||| || | |||||||||||| |||||||||| || ||||| Sbjct 137 CATGTGAAGCCTCCTCACCAAGCC-ATGGCTACTCGCAAGACAACTTGCAGTATTTGTTT 195 Query 312 AGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTA-AGTGTCGTCATCGATTTT 370 |||||||||| || | | ||||||||||||||||||| || | |||||||||| ||| | Sbjct 196 AGATGATGATGTTGACGCTAATCAGATGTTTTGTGTTGATATA-TGTCGTCATCAATTCT 254 Query 371 GTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGAT 430 ||| || ||||||| ||||||| |||||||||||||||||||||||||||| || |||| Sbjct 255 GTTTTGAGTGTATGAAACGACATGTAGAGGTGAGGCTACTCGAGGGAAGTGTGATTAGAT 314 Query 431 GTCCTCATTACCGCTGCAAGACTACGCT 458 |||| ||||||||||||||| ||| ||| Sbjct 315 GTCCGCATTACCGCTGCAAGTCTAAGCT 342 > Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 Length=819 Score = 276 bits (149), Expect = 3e-73 Identities = 407/530 (77%), Gaps = 24/530 (5%) Strand=Plus/Plus Query 334 CAGATGTTTTGTGTTGGTA-AGTGTCG-TCATCGATTT-TGT-TCCGACTGTATGAGACG 389 |||||||||| | ||| | | || || |||| || || ||| | || || |||| ||| Sbjct 286 CAGATGTTTTCTATTGATTTA-TG-CGGTCAT-GAATTCTGTGTG-GAGTGCATGAAACG 341 Query 390 ACATATAGAGGTGAGGCTACTCGAGGGAAGTGTAATGAGATGTCCTCATTACCGCTGCAA 449 ||||||||| ||||||||||||| |||| ||||| ||||||||||||||| | |||| Sbjct 342 ACATATAGAAGTGAGGCTACTCGCGGGAGGTGTACCGAGATGTCCTCATTATCAATGCAG 401 Query 450 GACTACGCTAAAAT-TTGGAGGCTGTATAAATCTTTTGACACCTAAAATAAGAG-AGATG 507 | ||| || | | ||||| ||||| | |||||||||||| ||||| ||| || | ||| Sbjct 402 GTCTAAACTTAC-TCTTGGAAGCTGTGTCAATCTTTTGACATCTAAACTAAAAGCA-ATG 459 Query 508 TGGCAACAAAGGATTAAAGAAGACTTAATCCCTGTAACAGGG-AGAATTTACTGCCCAAA 566 ||| ||| || || | || || | || | ||| | || ||| |||| || ||||| Sbjct 460 TGGGAACGAATAATCGACGAGGAATCGATTCATGTGGC-GGACAGAGTTTATTGTCCAAA 518 Query 567 CTCGCGATGCTCGGCTTTAATGTCAGAAACCGAGCTCTCTA--T-A---TCAACTAAAGA 620 | || | ||||| || |||||||| | |||| ||||||| | | | || |||||||| Sbjct 519 CCCGAGGTGCTCAGCCTTAATGTCGGTAACCAAGCTCTCAAACTCAAACTCTACTAAAGA 578 Query 621 AGATG-AAGTTAGGAGATGTTGCTTCAAATGCGGTCAAATCTTTTGCATCAAGTGTAAAG 679 ||||| || | | |||| | || ||||||||| || || |||||| |||| || |||| Sbjct 579 AGATGTAACT-ATGAGAAGCTGTTTCAAATGCAGTGAACCCTTTTGTATCACCTGCAAAG 637 Query 680 TTTCATGGCATAGTAACTTGTCGTGCAACGATTACAAGA-AGTTGAATCCATACCCTACA 738 || | |||||||| ||||||||||||||||||||||||| | ||| |||| | |||||| Sbjct 638 TTCCGTGGCATAGCAACTTGTCGTGCAACGATTACAAGAGA-TTGGGTCCAAATCCTACA 696 Query 739 GAAAATGATGGAAAGATTAAAGCTCTGGCAAATCAGAAAAGGTGGCGTCAATGCGGAAAG 798 | | ||||| |||||| |||||||| ||| || |||||| |||||||||||| | ||| Sbjct 697 GCAGATGATATAAAGATGAAAGCTCTAGCATATAAGAAAATGTGGCGTCAATGTGAAAAT 756 Query 799 TGTCAACACATGATTGAACTTTCTAAAGGATGCGTACAAGTAAAGTGCAG 848 ||||||||||| || |||||||| |||||||| | || |||| ||||| Sbjct 757 TGTCAACACATAATCGAACTTTCGGAAGGATGCATCCATGTAACTTGCAG 806 > Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435 Length=411 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 225 GGAAACAATAGTTTCTGAAATCAGCATA 252 |||||||||||||||||||||||||||| Sbjct 3 GGAAACAATAGTTTCTGAAATCAGCATA 30 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38961621174 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5