BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45555.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937230 jgi|Araly1|937230|scaffold_501421.1 828 0.0
Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 407 5e-113
> Ahg937230 jgi|Araly1|937230|scaffold_501421.1
Length=724
Score = 828 bits (448), Expect = 0.0
Identities = 548/597 (92%), Gaps = 4/597 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACAATAGATTGTGAAATCAGCTTACTTGTGGATCCTGAGACTTGCAGTATATGT 60
|||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 21 ATGGAAACAAAAGATTGTGAAATCAGCTTACTTGTGGACCCTGAGACTTGTAGGATATGT 80
Query 61 TTCAATGATGATTTCAAATCTGAGCAAATGTATTATGTTGCTTTATGCAATCATAAATTC 120
||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 81 TTCGATGATAATTTCAAAGCTGAGCAGATGTATTATGTTGCTTTATGCAATCATAAATTT 140
Query 121 TGTTTGGAATGCATGAAACGATATATAGAAGTGAGGCTTCTAGAGGGAACTGTACTGATA 180
|||||||||||||||||||||| |||||||| | |||||| ||||||||||||| ||||
Sbjct 141 TGTTTGGAATGCATGAAACGATTTATAGAAGACAAGCTTCTCGAGGGAACTGTACCGATA 200
Query 181 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAAAAGTTGTTTTCATATTTTGACA 240
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 201 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAGAAGTTGTGTTCATTTTTTGACA 260
Query 241 TCTAAACTAAAAGCGATGTGGGAACAAAAGATTGAAGAGGAATCCATTCCAGTAACGGAG 300
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 261 TCTAAACTAAAAGCGATGTGGGAACAACGGATTGAAGAGGAATCGGTTCCAGTAACGGAG 320
Query 301 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAATCGAGCTCTCTAAA 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 321 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAACCAAGCTCTCTAAA 380
Query 361 TCTACCTT--AGAAGATGGATTTGTGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATTA 418
| || || ||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 381 TTTA--TTGAAGAAGATGGATCTATGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATGA 438
Query 419 ACTGCAAAGTTTCATGGCAAAGTAACTTGTCATGTGACAATTGCAAGAAATTGGGTAATA 478
|||||||||||| ||||| |||| ||||| |||||| ||| |||| ||||||||||
Sbjct 439 ACTGCAAAGTTTTGTGGCATAGTAGTTTGTCGTGTGACGATTACAAGGTTTTGGGTAATA 498
Query 479 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAAAAAGTGGCGCCAAT 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 499 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAATCTGTGGCGTCAAT 558
Query 539 GTGAAAAGTGCCAACATATGATCAAACTTTCGGAAGGATGCATCCATGTAACTTGCA 595
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 559 GTGAAAAGTGCCAACACATGATCGAACTTTCGGAAGGATGCATCCATGTAACTTGCA 615
> Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321
Length=819
Score = 407 bits (220), Expect = 5e-113
Identities = 494/623 (79%), Gaps = 31/623 (5%)
Strand=Plus/Plus
Query 1 ATGGAAACAATAGATTGTGAAATCAGCTTAC-T-T--GTGGATC--CTG-AGACTTGCAG 53
||||||||||||| || |||||||||| ||| | | | |||| | ||||||||||
Sbjct 196 ATGGAAACAATAGTTTCTGAAATCAGCATACATATACCT-GATCAGAAGAAGACTTGCAG 254
Query 54 TATATGTTTCAATGATGATTTCAAATCTGAGCAAATGTATTATGTTGCTTTATGCAATCA 113
||| |||| | ||||| | ||| || ||||||| |||| || | ||| ||||||| |||
Sbjct 255 TATTTGTTCCGATGATAACTTCGAACCTGAGCAGATGTTTTCTATTGATTTATGCGGTCA 314
Query 114 TAAATTCTGTTTGGAATGCATGAAACGATATATAGAAGTGAGGCTTCTAGAGGGAACTGT 173
| |||||||| |||| |||||||||||| |||||||||||||||| || | |||| |||
Sbjct 315 TGAATTCTGTGTGGAGTGCATGAAACGACATATAGAAGTGAGGCTACTCGCGGGAGGTGT 374
Query 174 ACTGATATGTCCTTATTATCAATGTGA-GTCTAAGCTGACTCTTAAAAGTTGTTTTC-AT 231
|| || ||||||| |||||||||| | |||||| || |||||| ||| || | || ||
Sbjct 375 ACCGAGATGTCCTCATTATCAATG-CAGGTCTAAACTTACTCTTGGAAGCTG-TGTCAAT 432
Query 232 ATTTTGACATCTAAACTAAAAGCGATGTGGGAAC-AAAAGATTGAAGAGGAATCCATTCC 290
|||||||||||||||||||||| |||||||||| || | || || |||||||| ||| |
Sbjct 433 CTTTTGACATCTAAACTAAAAGCAATGTGGGAACGAATA-ATCGACGAGGAATCGATT-C 490
Query 291 A-GTAACGGAGAGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAATCG 349
| || |||| ||| ||||||| || |||||||||||||| || ||||||||| || |
Sbjct 491 ATGTGGCGGACAGAGTTTATTGTCCAAACCCGAGGTGCTCAGCCTTAATGTCGGTAACCA 550
Query 350 AGCTCT----CT-AAA-TCTACCT-TAGAAGATG-GA-TTTGTG-AGATGCTTCCAATGC 399
|||||| || ||| |||| || |||||||| | | || | || || ||| |||||
Sbjct 551 AGCTCTCAAACTCAAACTCTA-CTAAAGAAGATGTAACTATGAGAAGCTGTTTCAAATGC 609
Query 400 GGGGAGCGCTTTTGCATTAACTGCAAAGTTTCATGGCAAAGTAACTTGTCATGTGACAAT 459
| || | |||||| || | |||||||||| | ||||| || |||||||| || || ||
Sbjct 610 AGTGAACCCTTTTGTATCACCTGCAAAGTTCCGTGGCATAGCAACTTGTCGTGCAACGAT 669
Query 460 TGCAAGAAATTGGGT-AATAATCCTACATCAGATGATA-AGATGCTAAAAGTTCTTGCAA 517
| ||||| ||||||| | ||||||||| ||||||||| | | | | |||| ||| |||
Sbjct 670 TACAAGAGATTGGGTCCA-AATCCTACAGCAGATGATATA-AAGATGAAAGCTCTAGCAT 727
Query 518 ATGAGAAAAAGTGGCGCCAATGTGAAAAGTGCCAACATATGATCAAACTTTCGGAAGGAT 577
|| |||||| |||||| ||||||||||| || ||||| || ||| |||||||||||||||
Sbjct 728 ATAAGAAAATGTGGCGTCAATGTGAAAATTGTCAACACATAATCGAACTTTCGGAAGGAT 787
Query 578 GCATCCATGTAACTTGCATGTAT 600
|||||||||||||||||| ||||
Sbjct 788 GCATCCATGTAACTTGCAGGTAT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5