BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45580.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 970 0.0
Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091 601 5e-171
Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435 117 2e-25
> Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321
Length=819
Score = 970 bits (525), Expect = 0.0
Identities = 672/742 (91%), Gaps = 14/742 (2%)
Strand=Plus/Plus
Query 336 ATCTGCTTCTGCGGAAGAGAACTTTGCCTTACTAATGGATAACGTTCAACACATTAGACA 395
|||||| |||| | |||||||| | || || ||||||||| | || |||| |||||||||
Sbjct 69 ATCTGCGTCTGAGCAAGAGAACATCGCTTTGCTAATGGATGATGTGCAACGCATTAGACA 128
Query 396 ACGATTGACGTCTAGCTTTCCTGTTCTGGTGACTAGGAATCAAATTAAATTTGTGTATGA 455
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 129 ACGATTGACGTCTAGCTTTCCTGTTCTGGTGACTAGGAATCAAATGAAATTTGTGTATGA 188
Query 456 ACTTGCAATGGAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCATGAC-AAGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 189 ACTTGCAATGGAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCA-GAAGAAGA 247
Query 515 CTTGCAGTATATGTTCCGATGATAATTTCGAACCTGAGCTGATGTTTTCTGTTGCTTTAT 574
|||||||||| |||||||||||||| ||||||||||||| |||||||||| ||| |||||
Sbjct 248 CTTGCAGTATTTGTTCCGATGATAACTTCGAACCTGAGCAGATGTTTTCTATTGATTTAT 307
Query 575 GCGGTCATGAATTCTGTGTTGAGTGCGTAAAACGACATATAGAAGTGAGGCTACTCGCGG 634
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 308 GCGGTCATGAATTCTGTGTGGAGTGCATGAAACGACATATAGAAGTGAGGCTACTCGCGG 367
Query 635 GAGGTGTACCGAGATGTCTTCATTATCAATGCGAG-TCTAAACTTACTCTTGCAAACTGC 693
|||||||||||||||||| ||||||||||||| || |||||||||||||||| || |||
Sbjct 368 GAGGTGTACCGAGATGTCCTCATTATCAATGC-AGGTCTAAACTTACTCTTGGAAGCTGT 426
Query 694 GCCAATCTTTTGACATCTAAACTAAAAGCAATGTGGGAACTAAGGATCGAAGAGGAATCT 753
| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 427 GTCAATCTTTTGACATCTAAACTAAAAGCAATGTGGGAACGAATAATCGACGAGGAATCG 486
Query 754 ATTCCTGTGGAGGAGAGAGTATATTGCCCCAACCCTAGGTGCTCGAGT-TTAATGTCGGT 812
|||| ||||| ||| ||||| ||||| || ||||| |||||||| || |||||||||||
Sbjct 487 ATTCATGTGGCGGACAGAGTTTATTGTCCAAACCCGAGGTGCTC-AGCCTTAATGTCGGT 545
Query 813 AACCAAGCTCTCAAACTCAA-C---A--AGAGAAGATGTAACTATGAGAAGTTGTGTAAA 866
|||||||||||||||||||| | | | ||||||||||||||||||||| ||| | ||
Sbjct 546 AACCAAGCTCTCAAACTCAAACTCTACTAAAGAAGATGTAACTATGAGAAGCTGTTTCAA 605
Query 867 ATGCGGTGAACCCTTTTGTATCAACTGCAAACTTCCGTGGCATAGCAACTTGTCGTGCAA 926
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 606 ATGCAGTGAACCCTTTTGTATCACCTGCAAAGTTCCGTGGCATAGCAACTTGTCGTGCAA 665
Query 927 CGATTACAAGAGCTTGGGTCCAAATCCTACAGCAGATGATATAAAGCTGAAAGCTCTAGC 986
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 666 CGATTACAAGAGATTGGGTCCAAATCCTACAGCAGATGATATAAAGATGAAAGCTCTAGC 725
Query 987 AAATCAGAAAATGTGGCGTCAATGTGAAAATTG-CAAAAACGTAATCGAACTATCGGAAG 1045
| || |||||||||||||||||||||||||||| ||| | | |||||||||| |||||||
Sbjct 726 ATATAAGAAAATGTGGCGTCAATGTGAAAATTGTCAACA-CATAATCGAACTTTCGGAAG 784
Query 1046 GATGCATGCATATCACTTGCAG 1067
||||||| ||| | ||||||||
Sbjct 785 GATGCATCCATGTAACTTGCAG 806
> Ahg897125 jgi|Araly1|897125|Al_scaffold_0005_1091
Length=798
Score = 601 bits (325), Expect = 5e-171
Identities = 600/730 (82%), Gaps = 30/730 (4%)
Strand=Plus/Plus
Query 350 AAGAGAACTTTGCCTTACTAATGGATAACGTTCAACACATTAGACAACGATTGACGTCTA 409
|||| ||| ||||| | |||||| || | || |||| ||| ||||||| |||| | ||||
Sbjct 23 AAGATAACATTGCCATGCTAATGAATGATGTGCAACGCATGAGACAACAATTGTCATCTA 82
Query 410 GCT-TTCCTGTTCTGGTGACTAGGA-ATCAAATTAAATTTG-TGTATGAA-CTTGCAATG 465
| | ||| |||||||||||| || ||||||||| |||| | ||| || |||||||||
Sbjct 83 G-TAATCCCATTCTGGTGACTA-GAGATCAAATTAGCTTTGCT-TAT-AAGCTTGCAATG 138
Query 466 GAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCATGACAAGACTTGCAGTATA 525
|||||| ||| ||| || |||||||||| || || | || | ||||||||| ||
Sbjct 139 GAAACAGTAGCTTCGGATATCAGCATAC--GTA--TG--CCTG-C--GACTTGCAGCATC 189
Query 526 TGTTCCGATGATAATTTCGAACCTGAGCTGATGTTTTCTGTTGCTTTATGCGGTCATGAA 585
|||| | ||||| |||| ||| |||||| ||||| ||||||| | |||||||||||| ||
Sbjct 190 TGTTTCAATGATGATTTGGAAGCTGAGCAGATGTATTCTGTTCCCTTATGCGGTCATCAA 249
Query 586 TTCTGTGTTGAGTGCGTAAAACGACATATAGAAGTGAGGCTACTCGCGGGAGGTGTACCG 645
|||||||| |||||||| | |||||||||||||||||||||||||| |||| ||||||||
Sbjct 250 TTCTGTGTCGAGTGCGTGAGACGACATATAGAAGTGAGGCTACTCGAGGGAAGTGTACCG 309
Query 646 AGATGTCTTCATTATCAATGCGAGTCTAAACTTACTCTT-GCAAACTGCGCCAATCTTTT 704
| ||||||||||||||||||||||||||| || |||||| | || || | |||||||||
Sbjct 310 ACATGTCTTCATTATCAATGCGAGTCTAAGCTAACTCTTAG-AAGTTGTGACAATCTTTT 368
Query 705 GACATCTAAACTAAAAGCAATGTGGGAACTAAGGATCGAAGAGGAATCT-ATTCCTGTGG 763
||| ||||||||||||| || ||||||| ||||||||||||||||| | |||||||||
Sbjct 369 AACACCTAAACTAAAAGCGATATGGGAACAAAGGATCGAAGAGGAAT-TGATTCCTGTGC 427
Query 764 AGGAGAGAGTATATTGCCCCAACCCTAGGTGCTCGAGTTTAATGTCGGTAACCAAGCTCT 823
||| ||||| ||||| || || || | |||| || | ||||||||| |||| |||| |
Sbjct 428 CGGATAGAGTTTATTGTCCAAAACCGACGTGCGCGGGATTAATGTCGAAAACCGAGCTTT 487
Query 824 CAAACTCAACAAG-AGAAGATGTAA-CTA-T--GAGAAGTTGTGTAAAATGCGGTGAACC 878
| | |||||| | |||||||| || || | ||| ||||||| ||||||||||||||
Sbjct 488 CTACCTCAAC-TGAAGAAGATG-AAGGTAGTAGGAGTTGTTGTGTCAAATGCGGTGAACC 545
Query 879 CTTTTGTATCAACTGCAAACTTCCGTGGCATAGCAACTTGTCGTGCAACGATTACAAGAG 938
|||||| |||||||||||| ||||||||||||| |||||||| ||| | |||||||||||
Sbjct 546 CTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAG 605
Query 939 CTTGGGTCCAAATCCTACAGCAGATGAT-ATAAAGCTGAAAGCTCTAGCAAATCAGAAAA 997
|| |||| ||||||||| || ||||| | ||| || |||| |||||||||||||||||
Sbjct 606 ATTAGGTCTGAATCCTACAACAAATGATGA-AAAACTAAAAGTTCTAGCAAATCAGAAAA 664
Query 998 TGTGGCGTCAATGTGAAAATTGCAAAAACGTAATCGAACTATCGGAAGGATGCATGCATA 1057
||||||||||||||||||| |||||| || | |||||||| ||| |||||||||| |||
Sbjct 665 TGTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTTTCGAAAGGATGCATCCATG 724
Query 1058 TCACTTGCAG 1067
| ||||||||
Sbjct 725 TAACTTGCAG 734
> Ahg897469 jgi|Araly1|897469|Al_scaffold_0005_1435
Length=411
Score = 117 bits (63), Expect = 2e-25
Identities = 130/160 (81%), Gaps = 14/160 (9%)
Strand=Plus/Plus
Query 463 ATGGAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCAT--GAC-AAGACTTGC 519
||||||||||||||||||||||||||||||||||| ||| || | || |||||||||
Sbjct 1 ATGGAAACAATAGTTTCTGAAATCAGCATACATATGCCTCCTCTTCAGAAGAAGACTTGC 60
Query 520 AGTATATGTTCCGATGATAATTTCGAACCTGAGC-TGATGTTTTCTGTTGCTTTATGCGG 578
|||| |||| ||| || | | | ||||| | |||||| || |||||||||||||
Sbjct 61 CGTATCTGTTTCGACGA-A-----G--C-TGAGCAT-ATGTTTACTATTGCTTTATGCGG 110
Query 579 TCATGAATTCTGTGTTGAGTGCGTAAAACGACATATAGAA 618
||||||||||||| |||||||| ||||||||||||||
Sbjct 111 TCATGAATTCTGTACGGAGTGCGTGGAACGACATATAGAA 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5