BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45590.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484942 jgi|Araly1|484942|fgenesh2_kg.5__934__AT3G45590.1 1077 0.0
> Ahg484942 jgi|Araly1|484942|fgenesh2_kg.5__934__AT3G45590.1
Length=806
Score = 1077 bits (583), Expect = 0.0
Identities = 738/812 (91%), Gaps = 14/812 (2%)
Strand=Plus/Plus
Query 196 AGAGACCCATCTCCATGGCACCAAGGTGGAAATGGAAAGGTGCTGAGGCAAAGGCACTTG 255
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AGAGACTCATCTATATGGCTCCAAGGTGGAAATGGAAAGGTGCTGAGGCAAAGGCGCTTG 60
Query 256 CAGAACCTGTTTCGAAAACAGTCTCGGAGCT-GAGATCTTC-ATTGACCCAAACCGAGGC 313
| |||||||||||| ||||||||| ||||| | |||||| ||| | |||||||||||
Sbjct 61 CGGAACCTGTTTCGGAAACAGTCTTAGAGCTCCA-ATCTTCTTTTG-CTCAAACCGAGGC 118
Query 314 TTTAGGTTTCCTCTCAAGTTGTAACGTACTTTTATCGGTTGAGTCAGAGGAAGCTGAGCT 373
|| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||
Sbjct 119 TTCCGGTTTCCTCTCAAGTTGTAACGTACTTCTATCGGTTGAGCCAGAGCAAGCTGATCT 178
Query 374 TTTGGATCGTTGTTGTTTTGGTAGACTAGTTGTTGGTGCT-GAGAAAGATAAGAGATGGA 432
|||||| ||||||||||| ||||||| |||||| ||| | |||||||||||||||||||
Sbjct 179 TTTGGACCGTTGTTGTTTCGGTAGACCCGTTGTTAGTG-TCGAGAAAGATAAGAGATGGA 237
Query 433 TTCAGTTATCCTTTGAAGAAGCTTTCTTTTTGTTTTACAAACTGAAATGCATCAAGATTT 492
|||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |
Sbjct 238 TTCAATTATCCTTTGAAGAGGCTTTCTTTTTGTTCTACAAGCTGAAATGCGTCAAGATCT 297
Query 493 GCCTTCACGGTCGTTCTCTGGAAAACGAGGTAGATTTATGGCGATCCATGAGTTCCTTTA 552
|||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 298 CCCTTCACGGTTGTTCCCTGGAAAACGAGGTAGATTTATGGAGATCCATGAGCTCCTTTA 357
Query 553 AG-CAAGATTTTGC--GATCTTGTACAAGGCTTATTCGCATCTACGATCGAAGAACTGGA 609
|| ||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 358 AGCCAA-ATTTTGCTACATC-T-TACAAGGCTTATTCCCATCTACGATCGAAGAACTGGA 414
Query 610 TTGTGAGATCAGGGTTACAATATGGAGTTGATTTCGTGGTGTATAGACATCATCCATCTC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTGTGAGATCAGGGTTACAATATGGAGTTGATTTCGTGGTGTATAGACATCATCCATCTC 474
Query 670 TTGTCCACTCTGAATACGCCGTTCTTGTTCAGTCCATTGGCGGGAATGATCGGTTAAAGG 729
|||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||
Sbjct 475 TTGTCCACTCTGAATACGCCGTCCTGGTTCAGTCCATTAGCGGGATTGATCGGTTAAAGG 534
Query 730 TGTGGTCCGATATCCATTGCAGTGTTCGACTAACCGGAAGCGTCGCGAAATCATTGTTGG 789
| ||||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 535 TATGGTCGGATATTCATTGCAGTGTTCGGCTAACCGGAAGTGTAGCGAAAACATTGTTGG 594
Query 790 TTCTTTACGTCAACAGAAAAGTCAACACAGAGAAGATGAATCTGCCTTTGTGTTTAGAGG 849
||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 595 TTCTTTACGTCAATGGAATAGTCAAAACAGAGAATATGAATCTGCCTTTGTGTTTAGAGG 654
Query 850 ACTACACAGTTGAAGAGCAAACAATACGTAGATGGAGTCCAGAACTTAGCCGTGAAGATG 909
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACTACATAGTGGAAGAGCAAACAATACGTAGATGGAGTCCAGAACTTAGCCGTGAAGATG 714
Query 910 AAACCAGAACATGATTAAGCTTACATGTTAACAA--GTCTTGTTGTAATGCTGATTTCTA 967
|||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||
Sbjct 715 AAACCAGAACATGATTAAGCTTACGTTTTAACAATTGTATTGTTGTAATGCTGATTTCTA 774
Query 968 GAAGAATATAAAATGAACTAGGTTCCGATTCC 999
|| ||| |||||||||||||||||| ||||||
Sbjct 775 GAGGAAGATAAAATGAACTAGGTTCTGATTCC 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5